update install

README.md

@@ -36,9 +36,11 @@ Configuration used for finetuning is available through [config](https://github.c
 To run inference, first install dependencies 
 
 ```
-mamba create -n prithvi-burn-scar python=3.10 torchvision numpy matplotlib rasterio torchmetrics openmim
+mamba create -n prithvi-burn-scar python=3.10 pycocotools ncurses
 mamba activate prithvi-burn-scar
-mim install mmcv-full==1.5
+pip install --upgrade pip && \
+    pip install -r requirements.txt && \
+    mim install mmcv-full==1.5.0
 ```
 
 #### Instructions for downloading from [HuggingFace datasets](https://huggingface.co/datasets)
@@ -50,19 +52,22 @@ mim install mmcv-full==1.5
    enter your HuggingFace username/password to do the `git clone`.
 
    ```
-   mkdir data
+   mkdir -p data
    cd data/
    git clone https://huggingface.co/datasets/ibm-nasa-geospatial/hls_burn_scars burn_scars
-   tar -xzvf burn_scars/hls_burn_scars.tar.gz -C data/
-   ls -lh data/
+   tar -xzvf burn_scars/hls_burn_scars.tar.gz -C ./
    ```
 
 
 With the datasets and the environment, you can now run the inference script.
 
 ```
-
-
+python burn_scar_batch_inference_script.py \
+-config burn_scars_Prithvi_100M.py \
+-ckpt burn_scars_Prithvi_100M.pth \
+-input data/burn_scars/validation \
+-output data/burn_scars/inference_output \
+-input_type tif
 ```
 
 ### Results

requirements.txt

@@ -0,0 +1,47 @@
+boxsdk==3.6.2
+cityscapesscripts==2.2.1
+codecov
+detail==0.2.2
+docutils==0.16.0
+einops==0.6.0
+flake8
+interrogate
+jupyterlab==4.0.1
+matplotlib==3.5.1
+mmcls>=0.20.1
+mmdet==2.22.0
+model_archiver==1.0.3
+myst-parser
+-e git+https://github.com/gaotongxiao/pytorch_sphinx_theme.git#egg=pytorch_sphinx_theme
+natsort==8.3.1
+numpy==1.21.6
+onnx==1.13.1
+onnxruntime==1.14.1
+onnx2torch
+opencv-python==4.7.0.72
+openmim
+packaging==21.3
+pandas==1.3.5
+pavi==0.0.1
+Pillow==9.4.0
+pip-tools
+prettytable==3.6.0
+pytest==7.1.3
+rasterio==1.3.4
+requests==2.28.2
+scikit-learn
+scipy==1.7.3
+scikit-image
+seaborn==0.12.2
+sphinx==4.0.2
+sphinx_copybutton
+sphinx_markdown_tables
+tensorrt==8.5.3.1
+timm==0.4.12
+torch==1.9.0+cu111
+-f https://download.pytorch.org/whl/torch_stable.html
+torchvision==0.10.0
+torchmetrics
+ts==0.5.1
+xdoctest>=0.10.0
+yapf