README.md

metadata

tags:
  - spacy
  - token-classification
language:
  - en
model-index:
  - name: en_sdoh_roberta_cui
    results:
      - task:
          name: NER
          type: token-classification
        metrics:
          - name: NER Precision
            type: precision
            value: 0.8016997167
          - name: NER Recall
            type: recall
            value: 0.7526595745
          - name: NER F Score
            type: f_score
            value: 0.7764060357

CNN based Social determinants of health NER with a fine-grained window context bag-of-words classifier and a standard ontology extension interface (SNOMED_CT and CUI)

Feature	Description
Name	en_sdoh_roberta_cui
Version	0.0.0
spaCy	>=3.2.1,<3.3.0
Default Pipeline	transformer, ner, sdoh_cui
Components	transformer, ner, sdoh_cui
Vectors	0 keys, 0 unique vectors (0 dimensions)
Sources	n/a
License	n/a
Author	Dima Lituiev

Label Scheme

View label scheme (52 labels for 1 components)

Component

Labels

ner

Anxiety: GAD, Anxiety: Generalized Anxiety Disorder, Anxiety: Level of anxiety, Anxiety: NA, Anxiety: Signs and symptoms of anxiety, Anxiety: family hx: Anxiety state, Anxiety: hx of anxiety state, Depression: Family hx: Depression, Depression: Major depressive disorder, Depression: NA, Depression: PHQ, Depression: Symptoms of depression, Depression: hx of Depression, Financial_strain: Financial problem, Financial_strain: Financially secure, Financial_strain: NA, Financial_strain: Unable to afford medication, Food: Able to obtain food, Food: Fruit and vegetable intake, Food: NA, Housing: Homeless, Housing: Housing unsuited to needs, Housing: Marginally housed, Housing: NA, Housing: Stably housed, Housing: Subsidized housing, Housing: lives in facility, Insurance_status: Inadequate healthcare resources, Insurance_status: NA, Marital_or_partnership_status: Divorced, Marital_or_partnership_status: Engaged to be married, Marital_or_partnership_status: Married, Marital_or_partnership_status: NA, Marital_or_partnership_status: Partner, Marital_or_partnership_status: Partner relationship problem, Marital_or_partnership_status: Separated, Marital_or_partnership_status: Single person, Marital_or_partnership_status: Widowed, Social_isolation: At risk for loneliness, Social_isolation: Has social support, Social_isolation: Lives alone, Social_isolation: Lives with, Social_isolation: NA, Social_isolation: Personal relationship breakdown, Social_isolation: Social Isolation, Transportation: Has access to a car, Transportation: Has access to public transport vehicle, Transportation: NA, Transportation: Transportation problems, pain_and_disability: NA, pain_and_disability: Pain intensity rating scale, current, pain_and_disability: Pain intensity rating scale, worst

Accuracy

Type	Score
ENTS_F	77.64
ENTS_P	80.17
ENTS_R	75.27
TRANSFORMER_LOSS	37708138.10
NER_LOSS	1444086.80