README.md

metadata

annotations_creators:
  - machine-generated
language_creators:
  - machine-generated
license:
  - mit
multilinguality:
  - monolingual
pretty_name: tox21_srp53
size_categories:
  - 1K<n<10K
source_datasets: []
tags:
  - bio
  - bio-chem
  - molnet
  - molecule-net
  - biophysics
task_categories:
  - other
task_ids: []
dataset_info:
  features:
    - name: smiles
      dtype: string
    - name: selfies
      dtype: string
    - name: target
      dtype:
        class_label:
          names:
            '0': '0'
            '1': '1'
  splits:
    - name: train
      num_bytes: 1055437
      num_examples: 6264
    - name: test
      num_bytes: 223704
      num_examples: 784
    - name: validation
      num_bytes: 224047
      num_examples: 783
  download_size: 451728
  dataset_size: 1503188

Dataset Card for tox21_srp53

Table of Contents

• Table of Contents
• Dataset Description
  • Dataset Summary
  • Supported Tasks and Leaderboards
  • Languages
• Dataset Structure
  • Data Instances
  • Data Fields
  • Data Splits
• Dataset Creation
  • Curation Rationale
  • Source Data
  • Annotations
  • Personal and Sensitive Information
• Considerations for Using the Data
  • Social Impact of Dataset
  • Discussion of Biases
  • Other Known Limitations
• Additional Information
  • Dataset Curators
  • Licensing Information
  • Citation Information
  • Contributions

Dataset Description

• Homepage: https://moleculenet.org/
• Repository: https://github.com/deepchem/deepchem/tree/master
• Paper: https://arxiv.org/abs/1703.00564

Dataset Summary

tox21_srp53 is a dataset included in MoleculeNet. It is the p53 stress-response pathway activation (SR-p53) task from Tox21.

Dataset Structure

Data Fields

Each split contains

• smiles: the SMILES representation of a molecule
• selfies: the SELFIES representation of a molecule
• target: clinical trial toxicity (or absence of toxicity)

Data Splits

The dataset is split into an 80/10/10 train/valid/test split using scaffold split.

Source Data

Initial Data Collection and Normalization

Data was originially generated by the Pande Group at Standford

Licensing Information

This dataset was originally released under an MIT license

Citation Information

@misc{https://doi.org/10.48550/arxiv.1703.00564,
  doi = {10.48550/ARXIV.1703.00564},
  
  url = {https://arxiv.org/abs/1703.00564},
  
  author = {Wu, Zhenqin and Ramsundar, Bharath and Feinberg, Evan N. and Gomes, Joseph and Geniesse, Caleb and Pappu, Aneesh S. and Leswing, Karl and Pande, Vijay},
  
  keywords = {Machine Learning (cs.LG), Chemical Physics (physics.chem-ph), Machine Learning (stat.ML), FOS: Computer and information sciences, FOS: Computer and information sciences, FOS: Physical sciences, FOS: Physical sciences},
  
  title = {MoleculeNet: A Benchmark for Molecular Machine Learning},
  
  publisher = {arXiv},
  
  year = {2017},
  
  copyright = {arXiv.org perpetual, non-exclusive license}
}

Contributions

Thanks to @zanussbaum for adding this dataset.