#genome
stringclasses
121 values
asm_name
stringclasses
120 values
assembly_accession
stringclasses
120 values
bioproject
stringclasses
45 values
biosample
stringclasses
120 values
wgs_master
float64
seq_rel_date
stringclasses
98 values
submitter
stringclasses
76 values
ftp_path
stringclasses
120 values
img_id
float64
637M
2.51B
gtdb_id
stringclasses
120 values
scope
stringclasses
3 values
assembly_level
stringclasses
1 value
genome_rep
stringclasses
1 value
refseq_category
stringclasses
3 values
release_type
stringclasses
2 values
taxid
float64
1.15k
681k
species_taxid
float64
7
911k
organism_name
stringclasses
120 values
infraspecific_name
stringclasses
112 values
isolate
stringclasses
1 value
superkingdom
stringclasses
2 values
phylum
stringclasses
18 values
class
stringclasses
30 values
order
stringclasses
56 values
family
stringclasses
75 values
genus
stringclasses
89 values
species
stringclasses
117 values
classified
bool
1 class
lv1_group
stringclasses
2 values
lv2_group
stringclasses
13 values
score_faa
float64
0.93
1
score_fna
float64
0.88
1
score_rrna
float64
0.1
1
score_trna
float64
0.6
1
total_length
float64
618k
9.12M
contigs
float64
1
22
gc
float64
22.5
72.2
n50
float64
616k
9.03M
l50
float64
1
1
proteins
float64
525
7.92k
protein_length
float64
172k
2.68M
coding_density
float64
74
96.9
completeness
float64
76.3
100
contamination
float64
0
4.4
strain_heterogeneity
float64
0
100
markers
float64
124
383
5s_rrna
stringclasses
2 values
16s_rrna
stringclasses
1 value
23s_rrna
stringclasses
1 value
trnas
float64
14
20
draft_quality
stringclasses
2 values
start_position
int64
0
10M
human_label
int64
0
1
autotrain_text
stringlengths
150
150
autotrain_label
class label
121 classes
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,342,550
1
GCAGCCCTTTATGGTCCTGCTCAATGTGTACAACTTAAAAAAAAAAAAAATCCTCCAGGCCTGGAGAGCAGACGCCTGGCGTGAGACACCACAGTGAAGTCCCAACTCCTCACCCAATTCCGAGATGCGAGTCAGTGTGTGAAGCCTGGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
502,950
1
GCAGACACCTCCTGTTGGCCCTGCCCCACCTGGCTGGCCCTGCTGCCCGGGCAGAAATAATGGTGAGGATGACAATAGCCACAGTCGTCACTGTTTATGTCGGAGCTCTGCAAGGCTGGGCCCACATCACGGGACTCACACAACGCCACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,610,500
1
AAGGAGATTATGCCAGTCCTTTGGGTTAATGTTAAAAAAGTCAAGTAAACAATGAGAAAAATGTTTAATCATATTTTGGTGTGTTGTGACTATTTTTTGGTGTGTATCTCATATGTTCTGTTTGTGATAAAAAGTGAGGTTGCATCTCTT
120homo sapiens
G000007605
ASM760v1
GCF_000007605.1
PRJNA224116
SAMN02603993
null
2003/04/14
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/605/GCF_000007605.1_ASM760v1
637,000,066
RS_GCF_000007605.1
Monoisolate
Complete Genome
Full
representative genome
Major
227,941
83,557
Chlamydophila caviae GPIC
null
GPIC
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia caviae
true
Eubacteria
Chlamydiae
1
0.992
1
1
1,181,356
2
39.19
1,173,390
1
1,003
363,158
90.588188
99.49
0
0
220
yes
yes
yes
20
high
341,120
0
AATAAGAGATAAAACCTCTTTTCCCCGGCTATTTAAAATAGATTTCCCTACAGATTTTACCTGCGCAGAGGCTCCTTTAGGTAGCTTTAAGGAGAAGCGTTGTTCTAATTTTGTCATTGCTGTGATAAAGGCTTCTCTAGCTAATATAGA
23Chlamydophila caviae GPIC
G000010125
ASM1012v1
GCF_000010125.1
PRJNA224116
SAMD00061076
null
2005/08/12
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/125/GCF_000010125.1_ASM1012v1
637,000,284
RS_GCF_000010125.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,451
29,385
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
strain=ATCC 15305
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus saprophyticus
true
Eubacteria
Firmicutes
1
0.992
1
1
2,577,899
3
33.19
2,516,575
1
2,502
730,892
83.519176
99.44
0
0
348
yes
yes
yes
20
high
125,450
0
AACCTTCTGGATTCTTTTTGTTTAAATGTGAGAATAAAAAGAATCATTAGAATTAAAATTTAATTAATTACCGAGTGATGAAAAAATAGATACTACATTCTACTTTTAATATTGTATAATATGAAATATATTAATATTTATATAATTAAA
90Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
G000009065
ASM906v1
GCF_000009065.1
PRJNA57621
SAMEA1705942
null
2003/05/06
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1
637,000,351
RS_GCF_000009065.1
Monoisolate
Complete Genome
Full
reference genome
Major
214,092
632
Yersinia pestis CO92
strain=CO92
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia pestis
true
Eubacteria
Proteobacteria
1
0.994
1
1
4,829,855
4
47.64
4,653,728
1
4,298
1,371,586
83.669593
99.82
0
0
372
yes
yes
yes
20
high
2,211,690
0
GCGATCATGTTTCGTGATGCGAATATCCCTTCACAAATCATCATGAATGAATTTGAGGCTGCCAGTACGCATTTTGATATGCCGAATAGTGTACTGAAAACGTTTCCGGTGTGGGTTGATGTTGATGACCCGCGTAATCCGCATCATCAT
116Yersinia pestis CO92 ASM906v1
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
4,465,240
0
TCCGGTCCTTGAAGTCCACGTCATCCACGCTGTCGGGATCGAATACAACAATGCTCATGACATTCTCCTTTTCCAGCAGGATGGAGAAGAGTCGGAGCGCGCATTTGCGCCGATTCCGCAGGATCTATGCCAGAATCCGCGCGGCTTCAT
86Sinorhizobium meliloti 1021
G000009305
ASM930v1
GCF_000009305.1
PRJNA224116
SAMEA3138199
null
2006/06/28
Penn State Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1
637,000,130
RS_GCF_000009305.1
Monoisolate
Complete Genome
Full
representative genome
Major
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter acinonychis
true
Eubacteria
Proteobacteria
1
0.994
0.9
1
1,557,588
2
38.17
1,553,927
1
1,547
470,618
89.011857
99.12
0.7
100
271
yes
yes
yes
20
high
1,412,190
0
AGCGGGATTTTAGAAGCGTTTGATTACCGGGGCGTGAAAATCCATCAGCAAGAGGTGCAAACAAGCGCGCTCTTGCCGATCACGCAAAAAATCGTTTTCAAGTTTAACGATCGCTTTTTTGCGGTGTGTGAAGGCGTGGGGGATTTGGAT
46Helicobacter acinonychis str. Sheeba
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,582,900
1
TGAATGAATGAGTGAATGAAAGCTGCGTGGAATCTGGAGTCTTCCTGGTGGGAGACAGCCCTTAAAGCAGTATCCCTGGCGCTGTCTCCTCCTCTGTTAGCCTTACCCGTCCTGGCCTGCCCTTGCCCATTTTGAGGACTTGCTGCTCCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
334,350
1
TCCTCCCCCTCCACCGCCAGGCCCGGGTGGCCGCCGCCTCCTCCGAACGCGGCCGCCTCCTCCTCCGAACGTGGCCTCCTCCGAACGCGGCCGCCTCCTCCTCCGAACGCGGCCGCCTCCTCCTCCGAACGTGGCCTCCTCCGAACGTGG
120homo sapiens
G000008165
ASM816v1
GCF_000008165.1
PRJNA58091
SAMN02598266
null
2004/06/24
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/165/GCF_000008165.1_ASM816v1
637,000,015
RS_GCF_000008165.1
Monoisolate
Complete Genome
Full
reference genome
Major
260,799
1,392
Bacillus anthracis str. Sterne
strain=Sterne
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,228,663
1
35.38
5,228,663
1
5,471
1,495,624
84.251844
99.23
0.15
0
381
yes
yes
yes
20
high
1,949,610
0
TTTCTGAATTTCCATTTCATAACCCCTCACATTCGTATTTAAAAATAGGATGGATGCCTTAGCCACTTTTCTAATTCCACACTCCCTTGAACAGACAACAGTCGGTATAAATAACGGTAAGGCTGTCTACACTTTTCAAGTTGAGGAATA
6Bacillus anthracis str. Sterne ASM816v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,489,650
1
GCAGGTGCCTGCAATCCCAGCTACTCTAGAGGCTGAGGTGGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAATGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,396,300
1
TAAAGTACTACTCCTTGGTGTGGGGCAGGGAGGGAGGGGGGAAGATTTTTAACATAGAATACAAATTGAGTTTGTTGGAAAAGGTATCCCTATAAAATGTTGTCCAGGTAGTTAGAGCTTAATATGGGTGATAATTTCCCTAGAAGAATA
120homo sapiens
G000008185
ASM818v1
GCF_000008185.1
PRJNA57583
SAMN02603967
null
2004/02/03
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/185/GCF_000008185.1_ASM818v1
637,000,327
RS_GCF_000008185.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,275
158
Treponema denticola ATCC 35405
strain=ATCC 35405
null
Bacteria
Spirochaetes
Spirochaetia
Spirochaetales
Spirochaetaceae
Treponema
Treponema denticola
true
Eubacteria
Spirochaetes
1
1
1
1
2,843,201
1
37.87
2,843,201
1
2,578
885,778
91.799314
100
0
0
281
yes
yes
yes
20
high
1,996,280
0
TCAATACTGAATCCTGTAGGAACGACTTCGCTCGACCAGTAACCTAAGAATTCTTCAGGATTGTCTATAAATTGTTTACAGCTTGTAAATACAATGGCCGTTGTCAGCAATACCGCTGAAATTATTAAAATCTCTAAAATTTTTTTCATA
104Treponema denticola ATCC 35405
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,947,300
1
TGGCTCTCTCTCCCGCAACCTATTGACATCCATTAACATTCTTCCAGCTAAAAAAAAATGCATCTTATTCTAACACTCTCCGTAGGCAGGAAGCTGGGCATTGAATTACTGAGCCTGAGTAATTGCCCGTAGGCATTGTGATGGAAAATG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
324,600
1
CAGATAGACACACAAAAGCCAGAACCAGACCAGATTGAGTATCTCAGTGGCTGCAGCCTTTATTCCCTTTATTCTTTAGGATTTGAACTCAAACCAGATTCAGGGTTCTAGCCCAACCAGGATCCCCCTGGGGTGAAACTGAAACCCACA
120homo sapiens
G000011025
ASM1102v1
GCF_000011025.1
PRJNA224116
SAMD00060968
null
2010/01/05
Department of Bacteriology, Osaka Dental University
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/025/GCF_000011025.1_ASM1102v1
646,311,951
RS_GCF_000011025.1
Monoisolate
Complete Genome
Full
representative genome
Major
680,646
43,675
Rothia mucilaginosa DY-18
strain=DY-18
null
Bacteria
Actinobacteria
Actinobacteria
Micrococcales
Micrococcaceae
Rothia
Rothia mucilaginosa
true
Eubacteria
Actinobacteria
1
1
1
1
2,264,603
1
59.62
2,264,603
1
1,722
637,843
83.000906
99.33
0
0
293
yes
yes
yes
20
high
130,780
0
CTGGCACCGCTGCACAACCCCGCACACGCTCAGGGCATGCGCGCAGCAATGCACAAGTGGCCCTCCCTGCCGCAGGTTGCTATCTTCGACACCGCGTTCCACTCCACCATGCCCGAAGAAGCATGGCGCTACGCGATCCCCTACGACCTG
84Rothia mucilaginosa DY-18
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
859,200
1
ACCGTCCGGCCCTCACCGCCCCTTCATCACCCTGACCCACCCACACCCTCTCCTCCGCGCCTCCCCTTCCCCTCCATCACCCTGCCCTGCCCCTTCCCCTCCATCACCCTGCCCTGCTCCCCTCTTCTCCCCCTTCCCTCCATCATCCCG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
905,550
1
GCCTTACTGCTCACACAAAACCTGTTTGGTGGACTCTTTACATGGACGCACATGACATGAACTACTGATTAGAACTGGTGGAAAAAGTTGTTTATTGCAACTGCGAGGAAGTTAGACTTTAAAATGCAGAACAAAGACTGAACATACTGA
120homo sapiens
G000009345
ASM934v1
GCF_000009345.1
PRJNA57741
SAMEA1705958
null
2007/01/12
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/345/GCF_000009345.1_ASM934v1
640,069,335
RS_GCF_000009345.1
Monoisolate
Complete Genome
Full
reference genome
Major
393,305
630
Yersinia enterocolitica subsp. enterocolitica 8081
strain=8081
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia enterocolitica
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
4,683,620
2
47.22
4,615,899
1
4,253
1,352,606
85.086813
99.95
0
0
373
yes
yes
yes
20
high
3,356,340
0
TTCTAAAACATGCTGCCAAGGACGTATAGCATATGGATTCCGTATAATAACAGGCTCAGAGTTCTCAAATGCGCGTAGCATATCTGGAACCACACGGTCTAAAGCCCAATCACCACCGCCAATAACATTACCTGCACGTGCTGTCGCTAA
115Yersinia enterocolitica subsp. enterocolitica 8081
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,064,900
1
GTATTGTTTGGAAGAAATAATAGAGATATTGATTACTTTAATATTTAAGTTAAATAAGCATAAAAATTTAAGGTAGAGAAGTTCTGCTTTTTGCCGAGGACATCAAAAGCTGCAATTGAATATCATTTCCTTCCGTACAAGAAAAAGCCA
120homo sapiens
G000010665
ASM1066v1
GCF_000010665.1
PRJNA224116
SAMD00060954
null
2009/06/11
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/665/GCF_000010665.1_ASM1066v1
644,736,352
RS_GCF_000010665.1
Monoisolate
Complete Genome
Full
representative genome
Major
573,370
184,917
Desulfovibrio magneticus RS-1
strain=RS-1
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfovibrionales
Desulfovibrionaceae
Desulfovibrio
Desulfovibrio magneticus
true
Eubacteria
Proteobacteria
0.99
0.996
1
1
5,315,620
3
62.67
5,248,049
1
4,555
1,546,858
85.744052
100
0
0
357
yes
yes
yes
20
high
2,511,210
0
ACCACACGCACCGTCTCCTCAGCCGCTCTGACCGTCTGCGCCAAGCCCGCCAGGCAAAACGCCGCCAGCGCCAGCACGGCCCAATGCCGTCGCCCTCCCCTTGCCATGAACGTCCTGCCTTCCATAACGCCTCCAAAACAAACGGCCGCC
36Desulfovibrio magneticus RS-1
G000006605
ASM660v1
GCF_000006605.1
PRJNA224116
SAMEA3283089
null
2005/06/27
Bielefeld Univ
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/605/GCF_000006605.1_ASM660v1
637,000,085
RS_GCF_000006605.1
Monoisolate
Complete Genome
Full
representative genome
Major
306,537
38,289
Corynebacterium jeikeium K411
strain=K411 = NCTC 11915
null
Bacteria
Actinobacteria
Actinobacteria
Corynebacteriales
Corynebacteriaceae
Corynebacterium
Corynebacterium jeikeium
true
Eubacteria
Actinobacteria
1
0.996
1
1
2,476,822
2
61.35
2,462,499
1
2,137
751,284
89.378688
100
0.68
0
319
yes
yes
yes
20
high
281,190
0
GTGAACTCCTCGAGTTCCGCCGAGCGCTCCGGGTGGGCCTCCAGCCCTCGCTGGAATTTGTATCCCGAGTAGTACCCGTGGACGGCCTTGTCGCGCAGGATCAGCCGGATCATGTCGGCTGTATTCATCAGCGTGCCACGGCAGCTAAAC
31Corynebacterium jeikeium K411 K411 = NCTC 11915
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,899,550
1
GGTCCACCCAACAACAGCAGCCATGTCCTCACCTCTTGCTACAGCAGCAACTTTATTTGATTTGATGTATATGAAGAAATAAAACTCAGAAGTCAATTGACTTAAACATGGAACAATGCAGCTTGGTTATTATGGTGTATGCTAAATTTT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,486,950
1
TTTTAATATTGACAGTATATGGTGGGTAGAGTGTGAAATTTAGCATCAGAAATCTGAATTTGACCAAGACTGCAGGACCTTATACAGTCATTTCACCCTTCTGGACCTCAACCTTCACATCCGTGGAAGGAAAATTGTAACACCTGCCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,711,450
1
CTGATTTTGTTCCCAGTTATGCTAATTGATACCAGACTCTGTTGATGGACTGAAGAGCAGATGTCTGATGTCACCACATAGTCTACAGCCACTTCCAAATGCCTTACTGCACTTTGTGCTTAGACAGTACATTGGATTATTCATGTTGAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,425,350
1
CTGAACCTAATAAAGGAGAAGTTTTTCCTTGACAGTGTCAACTGGGGTAGCAATACTTCTGGTTTCTGATTTGTGTTGAAATACGATTCAAGCTACACACTCTAAATTTATCTTGTCATTCCTCTGAAGATCAAGGTTGATTTATTTATT
120homo sapiens
G000009945
ASM994v1
GCF_000009945.1
PRJNA224116
SAMD00061108
null
2006/03/09
Japanese Consortium/Yamaguchi Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/945/GCF_000009945.1_ASM994v1
637,000,067
RS_GCF_000009945.1
Monoisolate
Complete Genome
Full
representative genome
Major
264,202
83,556
Chlamydia felis Fe/C-56
strain=Fe/C-56
null
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia felis
true
Eubacteria
Chlamydiae
1
0.992
1
1
1,173,791
2
39.34
1,166,239
1
994
361,027
90.6353
99.49
0
0
223
yes
yes
yes
20
high
640,380
0
TAACATTAACGACATCATTATGGAACTTGCTACAGAACTTAAAGAAGGAATTCTTCTAGTAGATAAGCCTCAGGGTAGAACCTCGTTTAGTCTCATTCGCACTTTAACAAAGTTAATCGGGGTCAAAAAAATCGGTCACGCAGGGACCCT
21Chlamydia felis Fe/C-56
G000009185
ASM918v1
GCF_000009185.1
PRJNA224116
SAMEA3138195
null
2006/06/22
Max Planck Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/185/GCF_000009185.1_ASM918v1
637,000,129
RS_GCF_000009185.1
Monoisolate
Complete Genome
Full
na
Major
362,976
293,091
Haloquadratum walsbyi DSM 16790
strain=DSM 16790 = HBSQ001
null
Archaea
Euryarchaeota
Halobacteria
Haloferacales
Haloferacaceae
Haloquadratum
Haloquadratum walsbyi
true
Archaea
Euryarchaeota
1
0.997
0.9
1
3,179,361
2
47.86
3,132,494
1
3,071
845,315
78.317152
99.3
0
0
220
no
yes
yes
19
medium
3,132,870
0
TCGACGGCTTGGATCCTGATCTCTTCCTGCTGTTGTCCCAGCCATCCGGAGCGCAGGTGTGCAAATTCATCAGCTCGCATTCCAGTGTGGAGCAGCGTCTTGATGATCAGTTCATGTTCGTCGCCCATTGACGTTGCTTGGTCGCGGAGA
45Haloquadratum walsbyi DSM 16790 DSM 16790 = HBSQ001
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
805,480
0
TCTTCTGCGCTTCGCCTTCGGACAGGAATTCCATGAGCTTCAGGGCATTCTCCTTGTTCGGCGCGTTCTTGGCGAGCGCCATGCCGGAGATGTTCACATGGGTGCCCCGGTCCTTCGTGTTCGGGAACAGAACCTTGATCGCCGAGGCCC
86Sinorhizobium meliloti 1021
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,700,100
1
AATAAGAGTAAAACTCCGTCTCAAAAAAATAAAAAACAAGAAAAACCTAGGATGGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGGGGATCACTTGAGGTCAAGAGTTTGACACCAGCCTGGCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,418,200
1
TGGAGGGCAGCCCACCTTGCCCACTTAGGCTCTTGGACAGTTTTCTTTTTTTTTTTTTGTTGAGGTGAAGTCTCACTCTATTGCCCAGGCTGGAGGGAGTGCAGTGGTATGATCACAGCTTATTGCAGCCTTGACCTCCTGAGCTCAAGT
120homo sapiens
G000009125
ASM912v1
GCF_000009125.1
PRJNA224116
SAMEA3138192
null
2003/05/06
Genoscope
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/125/GCF_000009125.1_ASM912v1
637,000,231
RS_GCF_000009125.1
Multiisolate
Complete Genome
Full
representative genome
Major
267,608
305
Ralstonia solanacearum GMI1000
strain=GMI1000
null
Bacteria
Proteobacteria
Betaproteobacteria
Burkholderiales
Burkholderiaceae
Ralstonia
Ralstonia solanacearum
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
5,810,922
2
66.98
3,716,413
1
5,062
1,725,241
87.482692
99.94
0
0
373
yes
yes
yes
20
high
4,834,050
0
CGCCCCGATGCTCAACTTTTCTCGGTGCCCGCCGGGTCGGCAAAGCGGGGGGCCGGGCGCGCCCCGCTACAATCGCGTCCTTGATCGTGAAGACGGCATTTCGAAATGGGGCTTGGCTGGTTTGGCATTTCCTCCGTATGGCTGTTGCCA
81Ralstonia solanacearum GMI1000
G000010625
ASM1062v1
GCF_000010625.1
PRJNA224116
SAMD00060936
null
2008/01/24
Kazusa DNA Research Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/625/GCF_000010625.1_ASM1062v1
641,522,640
RS_GCF_000010625.1
Monoisolate
Complete Genome
Full
representative genome
Major
449,447
1,126
Microcystis aeruginosa NIES-843
strain=NIES-843
null
Bacteria
Cyanobacteria
null
Chroococcales
Microcystaceae
Microcystis
Microcystis aeruginosa
true
Eubacteria
Cyanobacteria
1
1
0.9
1
5,842,795
1
42.33
5,842,795
1
5,605
1,591,543
80.239081
99.89
0.51
25
350
yes
yes
yes
20
high
4,962,360
0
ATTTTGGTAGTCGAGATAATAAGCGTGTTCCCACACATCCATAGTTAAGAGGGGAACCTGTCCGGCGGTTAAAGGATTGTCAGCGTTGCCGGTTTTGGTAACTTTGAGAGTACCGTTATCGAGAACCAACCAAGCCCAACCGCTACCGAA
64Microcystis aeruginosa NIES-843
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,594,250
1
CACACACTACATACACACACGCACACATGCCCCCTACATGTACACACACTACACACCCCACACCCCCACATGCCTCCAGTACACACACACACCTCCCACACACACCCCACACATACACACCCATACCCCACCCCCACACATATGCACACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
400,800
1
TGCCGTCCACATCAACCTGGAGGAGAAGGAGAAGCAGATCCGCTCCTTCCTGATTGAAGGTAGGGCCCTGACCCTGGTTCTGCCTCCCGCCTGGCCAGGCCATGGTGGGGCGGGAGCCTGGGGGACGCCCGACTCTTTAGTGGGGGCGCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,651,550
1
GGGGGCCAGACAGAGGGGCACGGAGTGAGCTGTACAAGCAAAGCCCACCCTCAAGTTCAAGCATGCCCAGGGCCACGCCGAGCCCCTGCACCCCAGCTCCATAAAAAAGCAGTGACAATGGCCCACATACTTCCTGTGGGCTCATTTAGT
120homo sapiens
G000007105
ASM710v1
GCF_000007105.1
PRJNA224116
SAMN02603579
null
2010/01/12
Macrogen Inc.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/105/GCF_000007105.1_ASM710v1
637,000,356
RS_GCF_000007105.1
Monoisolate
Complete Genome
Full
na
Major
264,203
542
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
strain=ZM4
null
Bacteria
Proteobacteria
Alphaproteobacteria
Sphingomonadales
Sphingomonadaceae
Zymomonas
Zymomonas mobilis
true
Eubacteria
Proteobacteria
1
1
0.9
1
2,056,363
1
46.33
2,056,363
1
1,753
604,103
86.562441
100
0
0
320
yes
yes
yes
20
high
512,590
0
GCCCCAGACCCTTGATCTTTTTTCATCTGGATCATGTTGATGGCGCTAGTTTCCCAAGCGGTCACAGCACCAATGCCATGATCGTCTATCCGATGCTTGCTTTGTTAATTAGACGTCATGGTGGCCGCCTCGGTTGGCTTTATGCGTCTA
117Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 ZM4
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
5,969,470
0
GGAGCCAGGTTCTTTATATTTTTGTTATCCTTGTTGTATATTTCGCACAGTTCCAAAAAATGTTCATTAATTTCATCTTCAGTCGCTTTTGGGTGATCCTTTTCATATTGAGTCAACTCTTCTAAAATTTTTTCTGAAAATCTAAAGTCA
15Brevibacillus brevis NBRC 100599
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,203,500
1
CGTCCAAGTGCCTGCTTGGAGGCCTTGCTGGAGACAGGCAGCGTCTGGGGTGAGGTGAGGATGGGGCCAGAGCTGATTCAGCACCTGCTATGCAGAAGTGCTGAGCCCTCCATTTACACACATCTTTCAGGTTGCACAAACTGGCATGTG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,364,200
1
CCAGTACACCCAGCTAATTTTTATATAGTTAGCAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCTGGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGCAAGCCACTGCACCCAGCT
120homo sapiens
G000007945
ASM794v1
GCF_000007945.1
PRJNA224116
SAMN02604087
null
2003/07/23
Univ. Ohio
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/945/GCF_000007945.1_ASM794v1
637,000,124
RS_GCF_000007945.1
Monoisolate
Complete Genome
Full
representative genome
Major
233,412
730
Haemophilus ducreyi 35000HP
strain=35000HP
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pasteurellales
Pasteurellaceae
Haemophilus
[Haemophilus] ducreyi
true
Eubacteria
Proteobacteria
1
1
1
1
1,698,955
1
38.22
1,698,955
1
1,689
506,660
87.856241
99.43
0.02
0
277
yes
yes
yes
20
high
1,268,150
0
CAAAAGCCTGAAACACCTGCCCACGCAAAATGGCTTCCGCTTTGTAGCTAATCTGTGCAGCTTCTTCTCTCAACATTCCACCACGTTGGTCTGGCGTTTGGGTTTCTATCAGCAGGGTTTTCTTCGCCAATTCCTTATCCAGTTTGTTTA
44Haemophilus ducreyi 35000HP
G000010665
ASM1066v1
GCF_000010665.1
PRJNA224116
SAMD00060954
null
2009/06/11
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/665/GCF_000010665.1_ASM1066v1
644,736,352
RS_GCF_000010665.1
Monoisolate
Complete Genome
Full
representative genome
Major
573,370
184,917
Desulfovibrio magneticus RS-1
strain=RS-1
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfovibrionales
Desulfovibrionaceae
Desulfovibrio
Desulfovibrio magneticus
true
Eubacteria
Proteobacteria
0.99
0.996
1
1
5,315,620
3
62.67
5,248,049
1
4,555
1,546,858
85.744052
100
0
0
357
yes
yes
yes
20
high
488,800
0
GGTCATCGGCTTCTCCGGTTGGGCTTGTCGCGTTTGGGGATCGGGCCGGGGTTGGCGGGTTTCGGGTCGGGGCTGGCGGCGTCGGGCTGTTCCGGTTCGGGAAGCGGCCAGGTTCCTTGGTCGGTTTCGAGGCTCTTGGCCCCGTCCGGG
36Desulfovibrio magneticus RS-1
G000008505
ASM850v1
GCF_000008505.1
PRJNA58089
SAMN02598265
null
2004/12/27
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/505/GCF_000008505.1_ASM850v1
637,000,023
RS_GCF_000008505.1
Monoisolate
Complete Genome
Full
reference genome
Major
281,309
1,428
[Bacillus thuringiensis] serovar konkukian str. 97-27
strain=97-27
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus thuringiensis
true
Eubacteria
Firmicutes
1
0.998
1
1
5,314,794
2
35.37
5,237,682
1
5,361
1,516,528
84.049767
99.07
0.31
0
381
yes
yes
yes
20
high
677,040
0
TTCGGAATGACCTTTGTAATTTTAACAGGGGGTATTGACTTATCGGTAGGTTCTATTTTAGCATTATCAAGTGCACTTGTTGCTGGAATGATGGCAAGTGGCATGGACCCGTTCCTTGCGATGGCAGTTGGATTATTAGCTGGTCTTGTA
118[Bacillus thuringiensis] serovar konkukian str. 97-27
G000007805
ASM780v1
GCF_000007805.1
PRJNA57967
SAMN02604017
null
2003/03/05
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/805/GCF_000007805.1_ASM780v1
2,508,501,074
RS_GCF_000007805.1
Multiisolate
Complete Genome
Full
reference genome
Major
223,283
251,701
[Pseudomonas syringae] pv. tomato str. DC3000
strain=DC3000
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas syringae group genomosp. 3
true
Eubacteria
Proteobacteria
1
0.997
0.9
1
6,538,260
3
58.34
6,397,126
1
5,862
1,948,843
87.825109
100
0.22
0
381
yes
yes
yes
20
high
1,618,110
0
GACGTGGTCATCGTCGATACCGCCGGTCGTCTGCACGTCGATGTCGAGATGATGGGCGAGATCCAGGCGCTGCACGCTGCGACCAAGCCAGCCGAAACGCTGTTCGTGGTCGATGCCATGACCGGTCAGGATGCGGCCAACACCGCCAAG
119[Pseudomonas syringae] pv. tomato str. DC3000
G000009205
ASM920v1
GCF_000009205.1
PRJNA57679
SAMEA1705932
null
2006/09/20
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/205/GCF_000009205.1_ASM920v1
640,069,308
RS_GCF_000009205.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,563
1,496
Clostridioides difficile 630
strain=630
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Peptostreptococcaceae
Clostridioides
Clostridioides difficile
true
Eubacteria
Firmicutes
1
0.998
0.9
1
4,298,133
2
29.06
4,290,252
1
3,829
1,209,268
82.891874
99.51
0.37
0
340
yes
yes
yes
20
high
3,140,800
0
TATAAACAACAAGTCCTGGATTTTCTTCTAATTTTTGTAATGCTTTTACATGACCAGCAGCTAAATCTAATACATGTATATAGTCTCTAACTCCAGTTCCATCATGTGTTGGATAGTCATTACCATAAACACTCAATTCCTTCAATTTAC
28Clostridioides difficile 630 ASM920v1
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
681,200
0
GCTGCTCATGCCCTCGTTATAAACTGCCACGATGCGCGCGTCCATTCCCTCTGCCTCGGCCAGAGAGGCCATGAGGACGCTGTAGTCCATCATGGAGCCTTCCATCGTCTCCACGCTCTTGTTCAAGCTCTGGGGCGCCGTGTCGTTGCC
58Methanocella paludicola SANAE
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
992,250
1
GAGATCACGCCATTGCACTCCAGCAGGGGTGACAGACTGAGACTCCATCTCAAAAAAGAAGTCTACCACATTTTACTCTGAGACAAGGAAATGTCCACAGGGAAGTGGCCACACACAGAAGTTAACCTAAAAGACAATGAATTCAGAGGA
120homo sapiens
G000009365
ASM936v1
GCF_000009365.1
PRJNA224116
SAMEA3138202
null
2006/07/24
German Research Centre for Biotechnology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1
637,000,004
RS_GCF_000009365.1
Monoisolate
Complete Genome
Full
representative genome
Major
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
null
Bacteria
Proteobacteria
Gammaproteobacteria
Oceanospirillales
Alcanivoracaceae
Alcanivorax
Alcanivorax borkumensis
true
Eubacteria
Proteobacteria
1
1
1
1
3,120,143
1
54.73
3,120,143
1
2,820
929,045
87.73194
100
0
0
352
yes
yes
yes
20
high
759,070
0
GGGTGTCCTTGTGGCTGCCATCACAATACGGTTGCGTCTGACTCAGGCCACAGGCACACCAGTACACCGTATCGCCTTTTTTGACGGGCAACGGAAACGGGACGGTGTCGGCAATGTGCGGGGCGTCCATGGCTCTCTCCTTCTCGTTTT
1Alcanivorax borkumensis SK2
G000008665
ASM866v1
GCF_000008665.1
PRJNA224116
SAMN02603985
null
1999/12/22
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/665/GCF_000008665.1_ASM866v1
638,154,502
RS_GCF_000008665.1
Monoisolate
Complete Genome
Full
representative genome
Major
224,325
2,234
Archaeoglobus fulgidus DSM 4304
strain=DSM 4304
null
Archaea
Euryarchaeota
Archaeoglobi
Archaeoglobales
Archaeoglobaceae
Archaeoglobus
Archaeoglobus fulgidus
true
Archaea
Euryarchaeota
1
1
0.9
0.9
2,178,400
1
48.58
2,178,400
1
2,518
688,447
93.086761
100
0
0
186
no
yes
yes
17
medium
2,101,450
0
AAATTTGAAATATGAAGGTTCTTAGCATCTCTCTGATATTCTTTGCTTTGTTGCTTACTGGCTGCTCTCAGGTGGAAAAGATTGCACCTGACAACTTCAACAAAATTTTTGAAGAAGGAAAACAGTTCGTGGAAAATACCCAAACTGAAA
3Archaeoglobus fulgidus DSM 4304
G000008505
ASM850v1
GCF_000008505.1
PRJNA58089
SAMN02598265
null
2004/12/27
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/505/GCF_000008505.1_ASM850v1
637,000,023
RS_GCF_000008505.1
Monoisolate
Complete Genome
Full
reference genome
Major
281,309
1,428
[Bacillus thuringiensis] serovar konkukian str. 97-27
strain=97-27
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus thuringiensis
true
Eubacteria
Firmicutes
1
0.998
1
1
5,314,794
2
35.37
5,237,682
1
5,361
1,516,528
84.049767
99.07
0.31
0
381
yes
yes
yes
20
high
1,041,950
0
TAAAAGAAGAACGAGAAAAACGAAATTGGTCGCAAAGTGATTTGGCTGAAAAAATTCATGTCAGTAGGCAGTCTGTTTCAAAATGGGAGACGGGAAAGAACTATCCGAGCATTGAAATTATTATTCATTTAAGCGATTTGTTCGGTATTA
118[Bacillus thuringiensis] serovar konkukian str. 97-27
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
377,700
1
AGGTCCCTGCCACACAGAGTACCAGGACAGCCCCCATTCCTGACAACATGGCACTGAGGCCCATCCTGGCCCTCAGCACAGCAATGCCACATGGGGCTCCGTCCCGAGCAACCAGAAGACGCAGCAGCAACAGCAAAGACAGCAAAGAGT
120homo sapiens
G000007465
ASM746v2
GCF_000007465.2
PRJNA57947
SAMN02604090
null
2011/09/01
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2
637,000,288
RS_GCF_000007465.2
Monoisolate
Complete Genome
Full
reference genome
Major
210,007
1,309
Streptococcus mutans UA159
strain=UA159
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Streptococcus
Streptococcus mutans
true
Eubacteria
Firmicutes
1
1
0.9
1
2,032,925
1
36.83
2,032,925
1
1,897
591,301
85.692487
100
0
0
308
yes
yes
yes
20
high
1,171,430
0
CTTAAGAGGACGACATAATTTCCCATCTTATATTAATTTATCTAGGAAACTCTCCCCAATCATAGCTGTATCTACACCAAAGTTATCAGCAATCGTTGCTGAAATATCAGCGTAATGACCAACAGGTAGGACTCCATTACCAGTAAATGA
92Streptococcus mutans UA159
G000010565
ASM1056v1
GCA_000010565.1
PRJDA19023
SAMD00060921
null
2007/05/07
Marine Biotechnology Institute Co., Ltd
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/565/GCA_000010565.1_ASM1056v1
640,427,128
GB_GCA_000010565.1
Monoisolate
Complete Genome
Full
na
Major
370,438
110,500
Pelotomaculum thermopropionicum SI
strain=SI
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Peptococcaceae
Pelotomaculum
Pelotomaculum thermopropionicum
true
Eubacteria
Firmicutes
0.98
1
1
1
3,025,375
1
52.96
3,025,375
1
3,001
887,464
86.415667
100
0.63
0
331
yes
yes
yes
20
high
1,726,400
0
CCTGCGCTCATCCTGATGGTTGCCCCTGCTCATTGGCCGGGATGCTCCCGTAGACTTCCACAATCAGTGGCATATTCGCCATCCTTTTCGCCATTTCCTCTCACTTCCGCCCCATTCTTCCCGCTGCCCACATTAGTCCGGTGGATGTCA
73Pelotomaculum thermopropionicum SI
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,347,250
1
TATAGGCGTGAGCCACTGCGCCTGGCCAACTCTACTCATTTCTATAAGGAGATACTTCCATCTTTTGCTATGCCATCCTTTTGCGCTGGAATTAGCTGGTATTCAGAAGGGAGCAGTTGTTTAATACAAGCTCCATGAATGCCAGAAGGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,251,050
1
TGATGAGCATCTGACAGCCTGGAACAGCACCCACACTCCCAGACGAGCATCGGACAGCCTGGAGCAGCACCCACACTGCCAGGCGAGCATCCGCCAGCCTGGAAAAGCACCCACACCCCCAGGTGAGCATTCGACAGCCTGGAGCAGCAC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,356,600
1
GGTCAGAGAGGAAGATAATCTATATTCATCCTCGTTCATATGTAATAAACTGGAAGGGCCAGGTACGGTGGCTCATGCCTATAATCCCAGCGCTTTGGGAGTCCAAGGCAGATGGATCACCTGAGGTCAAGAGTTTGAGACCAGCCTGGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,006,300
1
TCAGAGCCAGGGGTGGGCAGGACCCCAGGGGTTGGCAGCAGATCACAGCCAGCTGGGCAGATCTGCCGGGGTCCCCTCGGCTGCTATGGCCAACTCTCCCCTCCCTCTGGCTCAGGCCACCCACTCAGCAGAGTGGCCACAAAAAAGGAC
120homo sapiens
G000009365
ASM936v1
GCF_000009365.1
PRJNA224116
SAMEA3138202
null
2006/07/24
German Research Centre for Biotechnology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1
637,000,004
RS_GCF_000009365.1
Monoisolate
Complete Genome
Full
representative genome
Major
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
null
Bacteria
Proteobacteria
Gammaproteobacteria
Oceanospirillales
Alcanivoracaceae
Alcanivorax
Alcanivorax borkumensis
true
Eubacteria
Proteobacteria
1
1
1
1
3,120,143
1
54.73
3,120,143
1
2,820
929,045
87.73194
100
0
0
352
yes
yes
yes
20
high
243,490
0
CAGGCATTGGGCGTTGATGACGTGGCTGATTTGGTTTCACCGGTGTTGAGTGCAGAAGATTTAGCGCAAGCTTTACAGGTTGTAGGAGCGGTAACAGAGCCAACCATTGATATACTTGATGCAGCAATCCAAGCAGGTGGGTTGGACGGT
1Alcanivorax borkumensis SK2
G000009345
ASM934v1
GCF_000009345.1
PRJNA57741
SAMEA1705958
null
2007/01/12
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/345/GCF_000009345.1_ASM934v1
640,069,335
RS_GCF_000009345.1
Monoisolate
Complete Genome
Full
reference genome
Major
393,305
630
Yersinia enterocolitica subsp. enterocolitica 8081
strain=8081
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia enterocolitica
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
4,683,620
2
47.22
4,615,899
1
4,253
1,352,606
85.086813
99.95
0
0
373
yes
yes
yes
20
high
3,342,040
0
TGCCCTGCAGCGCCATTTCCACTATTAACAACTAACCTCAAGGGCTTAAATAAAGACGGATTTACATATCCCATCAAATGGTCAATATAGTCATCAATAATCGATATTTTATCATAACTACCCTTCATTGATGGTTCTACTGGTGGAAAT
115Yersinia enterocolitica subsp. enterocolitica 8081
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,810,600
1
GGAGGCTGAGGAAGAGGACGCTGTCAAAGGTCACTCCCAGTTTCCAGGCCAGATGATCGGTGGGTGGAGCTGCCATTGCCAGGGGCCAGGCTGCAGCGGGCTGTGTGGAAGAGCTTTGGGGAGCATATGGTGGGCAAGGAGCATTCACCC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,627,350
1
TGGAGACAAGAGCTTTATCATGCAGATGTGTGTTTATCAACCGGTGTGAGGAAATGAGGAGTCTACAAGTTAAGATTTGCAGGTCCATCCCCAAGATGGGTGAAGGACCATGTCATTCACTGGGTTATGACGATGCTGTTTGCTGGAGGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,918,600
1
GTCAGCAGCTGATCAGAAGAGTCCTCTTGTAACACAATTGGGGAGAATAGATTTACTGCCTTTGTAAACATTTCTGATTCCTCCATGAACGTTTGCGAGCTGGGCGGATGGTGATGACTGATTAGTCGTGTGTGCTGGGCCCCCTGTCCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,233,050
1
CTGGAACAGCACCCACACACCCAGGCGAGCATCTGATGGCCTGGAAACGCACCCACACACCCAGGTGAGCATCCGACATCCTGAAACAGCTCCCATACGCCCAGGTGAGCATCCCACATCCTGAAACAGCTCCCACACCCCCTGGTGAGC
120homo sapiens
G000009845
ASM984v1
GCF_000009845.1
PRJNA224116
SAMD00061121
null
2007/12/15
The University of Tokyo, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/845/GCF_000009845.1_ASM984v1
637,000,202
RS_GCF_000009845.1
Monoisolate
Complete Genome
Full
representative genome
Major
262,768
100,379
Onion yellows phytoplasma OY-M
strain=onion yellows
null
Bacteria
Tenericutes
Mollicutes
Acholeplasmatales
Acholeplasmataceae
Candidatus Phytoplasma
Onion yellows phytoplasma
true
Eubacteria
Terrabacteria
0.93
1
0.9
1
853,092
1
27.76
853,092
1
956
230,005
79.395423
98.57
0
0
124
yes
yes
yes
20
high
684,970
0
CAGTACCACATTTACTTTGCTTAACTTTTCCTTCTAACACTTTAATAACTTGTCCTGGTTGCAAAAAAAACTCAGGATTATCAGCATCAATATGAGTAAAATTCATAAGAACTTCATCATATTTTTGTTTACAATTATCAGTTCCTACAC
71Onion yellows phytoplasma OY-M onion yellows
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,452,250
1
CTGGCCTGGCTTCTCCCTCTTTCACCCACTGAGTGTCGACTCTGCCTTTCTGATCTGGGTCCCTGTGAGGAGGAAATATATATTTAGACTCTTCTGTACTTTCCGTGGTAACAGCCGCTTTATTCCTGGTGAAGAATGAGGAAAATGGGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,194,000
1
GATCCCCTCTTGCCAGCAAAAGCCCTTCCAGATGAGTGGTATCTGTCTCTGATGGCGGAGGGGACTTTCCTGGGTGTTGACATTCTCTCCACCTTCTCCTTCCCAACTTCCCATATGCTTCCTATTTGAAAAGAGCATCAAGGCCAAAGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
81,600
1
TGAGCTGGACATGTGTACCTTGTTCCTCATGTTAGAATGAAACTGTTTAATATGTCATGATTATTTATAATGTTGAGAGTAGTTTTTGTGTATATATTAAGATATTTACATCAGTTCTCTTCTATTCCTAGTTTGTTATTATTACAAATA
120homo sapiens
G000011065
ASM1106v1
GCF_000011065.1
PRJNA62913
SAMN02604314
null
2003/03/28
Washington University Department of Molecular Biology and Pharmacology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/065/GCF_000011065.1_ASM1106v1
637,000,026
RS_GCF_000011065.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,186
818
Bacteroides thetaiotaomicron VPI-5482
strain=VPI-5482
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides thetaiotaomicron
true
Eubacteria
Bacteroidetes
1
0.998
0.7
1
6,293,399
2
42.86
6,260,361
1
4,944
1,919,297
89.876027
99.41
0.4
0
348
yes
yes
yes
20
high
1,394,120
0
CCAGTCTTTATCCAGCCGGTCCAAGACACAGTTCAACGTTTTTACGGCACGTTTCAAGTAAGAAGTGTAAGCTGCCTCAAAAGAAAATCCAGCCTCCCGTAATGCATCGCCTGCCTTGCAGGCTTCTTCAACTCCTTTCTCGCTTAAATC
11Bacteroides thetaiotaomicron VPI-5482
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,745,350
1
CAAGAAGTTTAATTGACTCATGGTTCCACAGGCTTTACAGGAAGCATGGCTGGGGAGACCTCAGGAAACTTACAATCATGGCAGAAGGCGAAGGGGAAGCCCGCGTGTCCTGCGTGGCTGGAGCAGGAGGAAGAGGGTGAAGGGGGAGGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,958,900
1
GGGCATTTCTTGGCCTGCTGGGAAATGGCGCCTCTCCATCTTAGGGGGCCCGGACCAGACTGCTGGCTGTTTGAGTCAGACAGCTTTTCTTCCCATGTTTTGAGGGTAAGCAAGAACGAGAAAAAGGAAGAAAACAAAACATATTCTCAA
120homo sapiens
G000006925
ASM692v2
GCF_000006925.2
PRJNA62907
SAMN02603599
null
2011/08/03
Microbial Genome Center of ChMPH
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/925/GCF_000006925.2_ASM692v2
637,000,264
RS_GCF_000006925.2
Monoisolate
Complete Genome
Full
reference genome
Major
198,214
623
Shigella flexneri 2a str. 301
strain=301
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Enterobacteriaceae
Shigella
Shigella flexneri
true
Eubacteria
Proteobacteria
1
0.998
1
1
4,828,820
2
50.65
4,607,202
1
5,003
1,415,151
86.329724
99.7
0.21
0
372
yes
yes
yes
20
high
1,990,950
0
GTTTTTAAAAACGCTTTTGCGTCAAACTGATCACTCACTGACTTGATAATGTCTCCGCATTACACAGACCATGGCGAATTGCCAGGTGAGTCAGCTCAACATCGCCATGAATGTTTAGTTTACTGAACATACGATAGCGGTAGCTGTTCA
85Shigella flexneri 2a str. 301
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,210,550
1
AGCACCCACAAGCACAAGTGAGAATCTGACAGCCCAGAGCAGCACCCACACCCCCAGGGGAGCATCTGACCGCATGGAGCAGCACCCACACCCCCAGGAGAGCATCCGGTAGCCTGCAGCAGAACCCACACCAACAGGCGAGCATCTGAC
120homo sapiens
G000006175
ASM617v2
GCF_000006175.1
PRJNA224116
SAMN00000040
null
2010/06/03
US DOE Joint Genome Institute (JGI-PGF)
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/175/GCF_000006175.1_ASM617v2
646,564,549
RS_GCF_000006175.1
Multispecies
Complete Genome
Full
representative genome
Major
456,320
2,188
Methanococcus voltae A3
strain=A3
null
Archaea
Euryarchaeota
Methanococci
Methanococcales
Methanococcaceae
Methanococcus
Methanococcus voltae
true
Archaea
Euryarchaeota
0.97
1
1
1
1,936,387
1
28.59
1,936,387
1
1,727
526,927
80.167033
99.05
0
0
165
no
yes
yes
19
medium
929,370
0
TGAGTATACTAATTTACTAATTAGGCCAATTAATTAATAATGCTTAATTAACCCAATACCGTATATCTTAGGCTTCCACATTTTTGGAATACCAATGAACCCAAATAAATAATAATGTTTGGCAACTACACCATACAATTCTACAGTGTC
59Methanococcus voltae A3
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,812,800
1
GAGGCCATTTCGGTGATGCCAGTGATGGCCACTCATCTTCTCAGGCTTGCGAATGCGTTTCCTCGTGCCTGGTTTGCTTAGACAGTGGTGCGCCTCCGGCTTGCAAGCCTCCAGCCTGAGGGCAGCTCTGCCATGTCTTCTTGCTACTCT
120homo sapiens
G000007565
ASM756v2
GCF_000007565.2
PRJNA57843
SAMN02603999
null
2016/02/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2
637,000,222
RS_GCF_000007565.2
Multiisolate
Complete Genome
Full
reference genome
Major
160,488
303
Pseudomonas putida KT2440
strain=KT2440
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas putida
true
Eubacteria
Proteobacteria
1
1
0.9
1
6,181,873
1
61.52
6,181,873
1
5,584
1,861,131
88.706707
99.97
1.2
0
381
yes
yes
yes
20
high
2,326,350
0
CGCACCAGGGCCCCGCGCAGCGTCAGTACGTTGTGCTGCACATGGGTGGCGTTCTCGGCCATGCACAGTGCCCTGAGCGCCGGGAAATAAATGTTCATTTCCGCCGGCGCCTCGGTGCCCGGGGTCAGCTGGAACTCCACCTCCACGCCG
78Pseudomonas putida KT2440
G000011065
ASM1106v1
GCF_000011065.1
PRJNA62913
SAMN02604314
null
2003/03/28
Washington University Department of Molecular Biology and Pharmacology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/011/065/GCF_000011065.1_ASM1106v1
637,000,026
RS_GCF_000011065.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,186
818
Bacteroides thetaiotaomicron VPI-5482
strain=VPI-5482
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides thetaiotaomicron
true
Eubacteria
Bacteroidetes
1
0.998
0.7
1
6,293,399
2
42.86
6,260,361
1
4,944
1,919,297
89.876027
99.41
0.4
0
348
yes
yes
yes
20
high
4,485,780
0
ACGCAATAGCGATAGTTCTTTCTGGAGCTCAGAAATACTAGAATCAATAGCATCGCTATTTACTGGTTTAGAGGATCTACCCATATCTTTGTCTTCTATTTGATACTTGTTAAGCCAATAAGTAAGAAGCTTGGCACAAAAGCCGTGACG
11Bacteroides thetaiotaomicron VPI-5482
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,241,900
1
CAAAGCCAATACAGGTTCAAAAAAGAACAACACATAAGCACATCAGCCTCGGAGCCCCAGCTCTAGAAGGAGACAGGCACAATCGGACCCCACCTGTGGCTTCATGGTCCCCAAAGCCTGGGCTATGCTCAGGGCTGGAGGAGGAGCGAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,972,250
1
AGGCTCTGGAGCAGGGGTTGGGGCAGAGGTCTGGTCTGAGCAATTCCGGGTATCCCGGGCAGGGTGCCCTGGGGAACACTGGCGTTCTGGCCATAGGAACAGAGCAAGGATGGTCTAAGAGGTGAGGGGACAGCCTGAGGTCACAGGTGG
120homo sapiens
G000010425
ASM1042v1
GCF_000010425.1
PRJNA224116
SAMD00061080
null
2006/12/05
Gifu University, Life Science Research Center, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/425/GCF_000010425.1_ASM1042v1
639,633,010
RS_GCF_000010425.1
Monoisolate
Complete Genome
Full
representative genome
Major
367,928
1,680
Bifidobacterium adolescentis ATCC 15703
strain=ATCC 15703
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium adolescentis
true
Eubacteria
Actinobacteria
1
1
1
1
2,089,645
1
59.18
2,089,645
1
1,683
614,966
86.722338
100
0
0
284
yes
yes
yes
20
high
854,100
0
CCTGCTGATGCGCTCGCCGCACGCGCTGCAGCTCATCACGGACAGCCTGCGCTACTGGGTCACCGAAATGCATGTCGATGGTTTCCGATTCGATCTTGCGGCCACGCTGGCCCGCCAATTCCAGGAAGTCGACAAGCTGTCCGCCTTCTT
12Bifidobacterium adolescentis ATCC 15703
G000007725
ASM772v1
GCF_000007725.1
PRJNA224116
SAMN02604289
null
2003/01/29
Valencia Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/725/GCF_000007725.1_ASM772v1
639,633,012
RS_GCF_000007725.1
Monoisolate
Complete Genome
Full
representative genome
Major
224,915
9
Buchnera aphidicola str. Bp (Baizongia pistaciae)
strain=Bp (Baizongia pistaciae)
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Erwiniaceae
Buchnera
Buchnera aphidicola
true
Eubacteria
Proteobacteria
0.99
0.984
1
0.9
618,379
2
25.34
615,980
1
525
171,959
81.936644
97.18
0
0
196
yes
yes
yes
20
high
182,260
0
TCCCTAAAACAGAATCTCAAGGGCGTGTTCATACGTCTACTTGCATAGTAGCTGTAATACCTGTAGTTCCAAAAAAGGAAATAGAAAAAGTTAATATTAATGATTTAAAAATTGATACTTTTCGTTCTTCTGGTGCTGGAGGACAACATG
16Buchnera aphidicola str. Bp (Baizongia pistaciae)
G000009745
ASM974v1
GCF_000009745.1
PRJNA224116
SAMD00061075
null
2003/10/03
NHRI, Taiwan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/745/GCF_000009745.1_ASM974v1
637,000,337
RS_GCF_000009745.1
Multiisolate
Complete Genome
Full
representative genome
Major
196,600
672
Vibrio vulnificus YJ016
strain=YJ016
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio vulnificus
true
Eubacteria
Proteobacteria
1
0.996
1
1
5,260,086
3
46.68
3,354,505
1
4,639
1,553,759
87.03525
100
0.14
0
369
yes
yes
yes
20
high
2,431,390
0
TTCTCGATGGTTTGTACAACCAAAAAACCAGCTACTATGGCATGCTTAGTGCGTTTGAAAAGTTGGATAAAAATCAGCAAACCGCGGCAAAACTAGCAGAAATCATCAATAAAAATAGTGATTTTTCGATTACCGCAGGCCAAGCTGAAA
108Vibrio vulnificus YJ016
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,349,200
1
TTCAATTCTACTACATCCCTCTAAGGGATTAGTTTACACACCATACCTGGGGCAAATGTCTGCTGAATGAATGACTTTAAGAGAATGTTACAAAATACCCTGTAGAATATGACTGCATTTTGTTTAAAACTTTATGTAGTTAAATTTGTA
120homo sapiens
G000009725
ASM972v1
GCF_000009725.1
PRJNA224116
SAMD00061113
null
2004/05/11
Kazusa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/725/GCF_000009725.1_ASM972v1
2,514,885,032
RS_GCF_000009725.1
Monoisolate
Complete Genome
Full
representative genome
Major
1,148
1,148
Synechocystis sp. PCC 6803
strain=PCC 6803
null
Bacteria
Cyanobacteria
null
Synechococcales
Merismopediaceae
Synechocystis
Synechocystis sp. PCC 6803
true
Eubacteria
Cyanobacteria
1
0.99
0.9
1
3,947,019
5
47.37
3,573,470
1
3,713
1,164,101
86.890968
99.78
0
0
349
yes
yes
yes
20
high
2,517,450
0
CGCATGGTGTCTTCCCCCCGCTGGGCCAACTCTTCTATGGGTAAACATCCCTCAAAAAACTTAGCTGTTTCTCGGTCAAAGTCCTTCAGGGGAGCTTGTTCGGCCTCACACAATGCCTGCCAAAAATTGAAATATTGCTCTCGGTTAAAG
101Synechocystis sp. PCC 6803 ASM972v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,749,550
1
GTGAGATGAATACATGGAGTATCTTTGTTCTGGAAATAGACCACCTATGAATTATTATAGTAGAGAAATCCCAGGCCTCCTCGAAGGACAGGGAAAACCTGTAAAGTGTCTGTACTTTGGGCCCAGAGGAATAATGGAAAGAGGCCAGGC
120homo sapiens
G000007525
ASM752v1
GCF_000007525.1
PRJNA57939
SAMN02603675
null
2005/01/21
Nestle Research Center, Switzerland
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/525/GCF_000007525.1_ASM752v1
637,000,031
RS_GCF_000007525.1
Monoisolate
Complete Genome
Full
reference genome
Major
206,672
216,816
Bifidobacterium longum NCC2705
strain=NCC2705
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium longum
true
Eubacteria
Actinobacteria
1
0.996
0.9
1
2,260,266
2
60.13
2,256,640
1
1,833
667,063
86.967994
100
0
0
289
yes
yes
yes
20
high
1,897,870
0
CGATTCCAGCGATTCCGATGAATCCAGCGATTCCCAGGATTCCGCCGAACGTCCAACCCGCCGCCGTTCGCGCCGCGCCGCTTCCGCAGTGGCCGACTCGGATAGCGAGGATGATCGTCCTCGTCGTTCGCGCCGCACTGTCAGTGCCGA
13Bifidobacterium longum NCC2705
G000008265
ASM826v1
GCF_000008265.1
PRJNA224116
SAMN02603345
null
2004/06/08
Institut of Microbiology and Genetics, University of Goettingen
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/265/GCF_000008265.1_ASM826v1
638,154,512
RS_GCF_000008265.1
Monoisolate
Complete Genome
Full
representative genome
Major
263,820
82,076
Picrophilus torridus DSM 9790
strain=DSM 9790
null
Archaea
Euryarchaeota
Thermoplasmata
Thermoplasmatales
Picrophilaceae
Picrophilus
Picrophilus torridus
true
Archaea
Euryarchaeota
0.99
1
0.8
0.9
1,545,895
1
35.97
1,545,895
1
1,599
485,076
92.441789
99.59
0
0
196
no
yes
yes
18
medium
147,290
0
TTATAAATAATAATCCTATAATATTATCTGGCAGCTTTATTTCCTCATATGATGATACAAAGAATACCGTTCCCTTTTTTATATCATTTCCAGGGATTATATCGTTAATTCTAAGATCGTAGCCGTTCGGTGTTAAGCATTTTTCATCAA
74Picrophilus torridus DSM 9790
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,492,050
1
AATTAGGGAAAGACGTGGTGGCTGTAATTGGCGGTTGAGTATTTTCTGAATTTTAACATTCGCGGTATGCAAATCTATCAGTTTCTAACAATATCTAACAAGATTATTTGAAAGTGAGAGTCTCCCAAGAGATGCAGGCATGGTTCGGGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,449,050
1
CTATGACATATTTCTCTCAAGATTTATTAGGATTTTTTATTTAAAACAATATATTAAATAGGGGAGAAAAAGTAATCTTAGGTAAAATTCAAATATTAGCAAAACAAAACATGGACCAAAACCTCTTTTATTTGAAGTTCTCCCTCCTTC
120homo sapiens
G000010565
ASM1056v1
GCA_000010565.1
PRJDA19023
SAMD00060921
null
2007/05/07
Marine Biotechnology Institute Co., Ltd
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/565/GCA_000010565.1_ASM1056v1
640,427,128
GB_GCA_000010565.1
Monoisolate
Complete Genome
Full
na
Major
370,438
110,500
Pelotomaculum thermopropionicum SI
strain=SI
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Peptococcaceae
Pelotomaculum
Pelotomaculum thermopropionicum
true
Eubacteria
Firmicutes
0.98
1
1
1
3,025,375
1
52.96
3,025,375
1
3,001
887,464
86.415667
100
0.63
0
331
yes
yes
yes
20
high
2,674,620
0
TGTCTCTTTGAGGCGTGCCATGATCCTGGCCAAGCCGTATCTGCGCTTGCATACGCCAAAGCAACAGCGTTGCGTTCCCTCATGTCCTGGTGTGCGAATTGCTTCTCCCGTCTGCTATCAAGTGGCGGACGGCCCAGCGGCGGCCCGCTC
73Pelotomaculum thermopropionicum SI
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,066,200
1
TGCCAGGGGTGAGAGCTGAGTCCAAAGGAGGAACTCAGTGAGTTTCAATGAATGAATGAACGAATGACTCTGGTGACAAGGGGCTCTGATTGGCCAGCATGTGTCTTCTGAAGTCAGGCACCCCTGGCAGGGCCCCCGGTCCTCTGGGGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,622,950
1
AGAAGATAAAGCTTCTTTGAAAGTAAGCCCAAGGGAAAACGGAATTCAATACAAATGAAAAAGAAGTTGATGAAAGTATGTGTCAGTCAGGGCAGCTGTTCCTTAAATCGAGATCCAAATGCATCAGAGAAAGGCTTCTGGGGGAGCCTT
120homo sapiens
G000010205
ASM1020v1
GCF_000010205.1
PRJNA224116
SAMD00060919
null
2008/05/29
Kitasato Institute for Life Sciences
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/205/GCF_000010205.1_ASM1020v1
642,555,145
RS_GCF_000010205.1
Monoisolate
Complete Genome
Full
na
Major
334,380
784
Orientia tsutsugamushi str. Ikeda
strain=Ikeda
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rickettsiales
Rickettsiaceae
Orientia
Orientia tsutsugamushi
true
Eubacteria
Proteobacteria
0.99
1
0.9
1
2,008,987
1
30.51
2,008,987
1
2,188
522,417
76.576503
99.51
0.49
0
186
yes
yes
yes
20
high
391,040
0
CGTAAAAATTATTGCGGTTTATAACTAAAATATCATTGAATTCATTTGTCTTTAATAAAATATAACATATTATGTCTCTATAAGTTTATTAAAGTTAATAAGATGAAAATATGAAAAATCTTTTTTTGCAAAACATAAGCCAAGTTTTAG
72Orientia tsutsugamushi str. Ikeda
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,599,850
1
CTGGTCTCTGTTTCACTTTCAGGTGGACTGCTTCATTCATTTATTCATGAGACAAGGCCTCACTCTGCCACCCAGGCTGGAGTGCAGTGGCACATTCATGGCTCACTGCAGCCTCAGCCTCCCCAGCCCACCTCAGCCTCCTGAGTAGCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,896,400
1
GTTAGGTGCCTTATTCATTAATGACTCCCAGTTCGGACAAAGAAATTAACTCCCTTCTCCCTTCTAGCTTCAAAAATCTCTTTATTTCTTCACCTGCCTGCTGTACTCTCCAAAAAGAAAGAAAGAAAGTATTGCAGATATTTGTATGTG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,944,800
1
GCGGAGAGCCGCGTGAGGCGCGGGGTAGGGTGCCGGGTGCGGGGTGCAGAGCGCGCGGCAGGGCAGGGAGGGCTCACTCACGGGGCGCTGCCGTGGGCCATGAGGACGCAGGCAGCTCCTGCAGGAAGCGCACGGTCATTTCCAGGACGT
120homo sapiens
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
5,627,830
0
TAATCGTTGGTTCCAGTGCGTTGATACTTTCTACACGCTTAAACATTTTCTTTACTTCGCGTTCATTGCTATCGCCGAATATCTTTTTAACGAGTCCTAGCATGAGGACACCCCTTCCATATACTGCCAAACAAAAATGCACAAGCCGGC
15Brevibacillus brevis NBRC 100599
G000008465
ASM846v1
GCF_000008465.1
PRJNA224116
SAMN02604184
null
2004/12/02
University of Hawaii at Manoa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/465/GCF_000008465.1_ASM846v1
637,000,136
RS_GCF_000008465.1
Monoisolate
Complete Genome
Full
representative genome
Major
283,942
135,577
Idiomarina loihiensis L2TR
strain=L2TR
null
Bacteria
Proteobacteria
Gammaproteobacteria
Alteromonadales
Idiomarinaceae
Idiomarina
Idiomarina loihiensis
true
Eubacteria
Proteobacteria
1
1
1
1
2,839,318
1
47.04
2,839,318
1
2,658
892,961
92.667007
100
0.17
0
344
yes
yes
yes
20
high
1,117,610
0
ATTTTGGTCAACAGGTAAAGAAAGCTCAAAGCTCAAAGGCGAGTGAGTTCCCCAACCATCAAGACCGTTCAACGCAATCCGTGTAGCTGCTTGAGCTGAGTTAGGATCACCAATTGGAAGATCCAAAGTACCATCATTCTCACCCAACAA
50Idiomarina loihiensis L2TR
G000007625
ASM762v1
GCF_000007625.1
PRJNA224116
SAMN02603289
null
2003/02/05
Gottingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/625/GCF_000007625.1_ASM762v1
637,000,080
RS_GCF_000007625.1
Monoisolate
Complete Genome
Full
representative genome
Major
212,717
1,513
Clostridium tetani E88
strain=Massachusetts substr. E88
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Clostridium tetani
true
Eubacteria
Firmicutes
1
0.997
1
1
2,873,333
2
28.64
2,799,251
1
2,799
856,294
87.797934
98.28
0.14
0
315
yes
yes
yes
20
high
62,140
0
GATAGCAATTATAAGATATAGAGCTTTTGAGGATGTTGGTAGTGACTTGAGCTTTTCAGTGGCACTATTAGATTATAAAGATAGTGGAATTATAATAACAGGAATATATGGTAGAAATGAAAGTACTACCTATGCAAAGCCTATAGATAA
30Clostridium tetani E88 Massachusetts substr. E88
G000007565
ASM756v2
GCF_000007565.2
PRJNA57843
SAMN02603999
null
2016/02/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2
637,000,222
RS_GCF_000007565.2
Multiisolate
Complete Genome
Full
reference genome
Major
160,488
303
Pseudomonas putida KT2440
strain=KT2440
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas putida
true
Eubacteria
Proteobacteria
1
1
0.9
1
6,181,873
1
61.52
6,181,873
1
5,584
1,861,131
88.706707
99.97
1.2
0
381
yes
yes
yes
20
high
285,610
0
TGACCAGAAACTGCGCCGCCGACTGCACCATGAAGCCCAGGCCGCTGGTGGCGGCGATCAGTTCGGCGGCCACCAGGGTCGACCAGCCGACCCCCAGGCCAATGCGGATGCCGGTAAGGATGTCAGGCAAAGCACTGGGCAAAATGACGT
78Pseudomonas putida KT2440