metadata

license: apache-2.0
task_categories:
  - text-classification
tags:
  - protein
  - downstream task

MetalIonBinding Dataset with AlphaFold2 Structural Sequence

Description: Metal-binding proteins are proteins or protein domains that chelate a metal ion.
Number of labels: 2
Problem Type: single_label_classification
Columns:
- aa_seq: protein amino acid sequence
- foldseek_seq: foldseek 20 3di structural sequence
- ss8_seq: DSSP 8 secondary structure sequence
- ss3_seq: DSSP 3 secondary structure sequence
- esm3_structure_seq: ESM3 structure sequence encoded by VQ-VAE

Github

Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models

https://github.com/tyang816/SES-Adapter

Citation

Please cite our work if you use our dataset.

@article{tan2024ses-adapter,
  title={Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models},
  author={Tan, Yang and Li, Mingchen and Zhou, Bingxin and Zhong, Bozitao and Zheng, Lirong and Tan, Pan and Zhou, Ziyi and Yu, Huiqun and Fan, Guisheng and Hong, Liang},
  journal={arXiv preprint arXiv:2404.14850},
  year={2024}
}