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  - **Homepage:** [SPECIES](https://species.jensenlab.org/)
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  - **Repository:**
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- - **Paper:**
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  - **Leaderboard:**
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- - **Point of Contact:**
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  ### Dataset Summary
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- [More Information Needed]
 
 
 
 
 
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  ### Supported Tasks and Leaderboards
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  ### Languages
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- [More Information Needed]
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  ## Dataset Structure
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  ### Data Instances
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- [More Information Needed]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ### Data Fields
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  ### Licensing Information
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- [More Information Needed]
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  ### Citation Information
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- [More Information Needed]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ### Contributions
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  Thanks to [@edugp](https://github.com/edugp) for adding this dataset.
 
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  - **Homepage:** [SPECIES](https://species.jensenlab.org/)
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  - **Repository:**
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+ - **Paper:** https://doi.org/10.1371/journal.pone.0065390
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  - **Leaderboard:**
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+ - **Point of Contact:** [Lars Juhl Jensen](mailto:lars.juhl.jensen@cpr.ku.dk)
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  ### Dataset Summary
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+ S800 Corpus: a novel abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers.
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+ To increase the corpus taxonomic mention diversity the S800 abstracts were collected by selecting 100 abstracts from the following 8 categories: bacteriology, botany, entomology, medicine, mycology, protistology, virology and zoology. S800 has been annotated with a focus at the species level; however, higher taxa mentions (such as genera, families and orders) have also been considered.
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+ The Species-800 dataset was pre-processed and split based on the dataset of Pyysalo (https://github.com/spyysalo/s800).
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  ### Supported Tasks and Leaderboards
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  ### Languages
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+ English (`en`).
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  ## Dataset Structure
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  ### Data Instances
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+ ```
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+ {'id': '0',
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+ 'tokens': ['Methanoregula',
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+ 'formicica',
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+ 'sp',
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+ '.',
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+ 'nov',
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+ '.',
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+ ',',
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+ 'a',
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+ 'methane',
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+ '-',
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+ 'producing',
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+ 'archaeon',
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+ 'isolated',
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+ 'from',
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+ 'methanogenic',
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+ 'sludge',
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+ '.'],
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+ 'ner_tags': [1, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]}
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+
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+ ```
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  ### Data Fields
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  ### Licensing Information
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+ The species-level S800 corpus is subject to Medline restrictions.
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  ### Citation Information
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+ Original data:
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+ ```
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+ @article{pafilis2013species,
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+ title={The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text},
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+ author={Pafilis, Evangelos and Frankild, Sune P and Fanini, Lucia and Faulwetter, Sarah and Pavloudi, Christina and Vasileiadou, Aikaterini and Arvanitidis, Christos and Jensen, Lars Juhl},
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+ journal={PloS one},
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+ volume={8},
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+ number={6},
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+ pages={e65390},
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+ year={2013},
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+ publisher={Public Library of Science}
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+ }
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+ ```
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+ Source data of this dataset:
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+ ```
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+ @article{10.1093/bioinformatics/btz682,
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+ author = {Lee, Jinhyuk and Yoon, Wonjin and Kim, Sungdong and Kim, Donghyeon and Kim, Sunkyu and So, Chan Ho and Kang, Jaewoo},
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+ title = "{BioBERT: a pre-trained biomedical language representation model for biomedical text mining}",
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+ journal = {Bioinformatics},
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+ volume = {36},
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+ number = {4},
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+ pages = {1234-1240},
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+ year = {2019},
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+ month = {09},
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+ issn = {1367-4803},
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+ doi = {10.1093/bioinformatics/btz682},
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+ url = {https://doi.org/10.1093/bioinformatics/btz682},
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+ eprint = {https://academic.oup.com/bioinformatics/article-pdf/36/4/1234/48983216/bioinformatics\_36\_4\_1234.pdf},
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+ }
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+ ```
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+ and
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+ ```
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+ https://github.com/spyysalo/s800
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+ ```
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+
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  ### Contributions
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  Thanks to [@edugp](https://github.com/edugp) for adding this dataset.