Molecular Biology Database List

The **Molecular Biology Database List** (**MBDL**) is a list of molecular biology databases listed in Volume 27, Issue 1 of *Nucleic Acids Research*.

## Anatomy

* Zebrafish Developmental Anatomy
* GGED/DMDA
* Human Anatomy Database
* Atlas of Primate Brain

## DNA and cDNA sequences

* GenBank
* EMBL Nucleotide Sequence Database
* DDBJ
* GSDB
* PEDB
* Vertebrate MitBASE
* AMmtDB
* Berkeley Fly Database
* UniGene

## DNA sequence motifs

* EPD
* PLACE
* ooTFD
* TRANSFAC/COMPEL
* PlantCARE
* TRRD
* Ares Lab Intron Site

## Gene expression

* ASDB
* The Mouse Atlas and Gene Expression Database Project
* ARRAYdb
* Nematode Expression Pattern DataBase
* Flyview
* GXD/MGD
* Kidney and Ducted-Gland Gene Expression Databases
* Tooth Database

## Genome overview

* ECD/ECDC
* NRSub
* CyanoBase
* SGD
* AtDB
* FlyBase
* MITOMAP
* MitBASE
* MGD
* GOBASE
* EMGLib
* RsGDB
* HIV Sequence Database
* ACeDB
* TIGR Microbial Database

## Maps

* GDB
* Virgil
* Radiation Hybrid Database
* HuGeMap
* IXDB
* GenAtlas
* DRESH
* GB4-RH
* G3-RH
* GeneMap '98

## Mutations

* MmtDB
* HvrBase
* p53 Databases
* p53 Gene Mutation
* IARC Database of p53 Gene Mutations
* Database of Germline p53 Mutations
* HAMSTeR
* PAHdb
* Marfan Database
* The Androgen Receptor Gene Mutations Database
* BTKbase
* LDLR Database
* The Human Type I and Type III Collagen Mutation Database
* VHL Database
* Human PAX2 Sequence Variant Database
* The Human PAX6 Mutation Database
* Haemophilia B Database
* APC Gene Database
* WT1 Database
* 16SMD
* 23SMD
* HGMD
* A Mutation Spectra Database
* The Ad5E1A Database
* The SV40 T Antigen Database
* Asthma and Allergy Gene Database
* KinMutBase
* KMeyeDB
* PMD
* Atlas of Genetics and Cytogenetics in Oncology and Haematology
* Human MitBASE
* OMIM
* HGBASE
* RB1base
* NCL Mutation Database
* HIV RT and Protease Sequence Database
* GRAP
* ZFIN

## Other

* MPDB
* CUTG
* INFOGENE
* MTB
* AAindex
* NCBI/GenBank Taxonomy Database
* PubMed
* CarbBank
* The Mendel Database
* The Homeobox Page
* Tree of Life
* Xenopus Molecular Marker Resource
* Vector DB
* DrugDB

## Pathways and regulation

* MitBASE Pilot
* MPW
* EcoCyc
* RegulonDB
* FlyNets/GIF-DB
* EpoDB
* UM-BBD
* KEGG
* Klotho

## Protein curation

* GenProtEC
* ESTHER
* NRR
* GPCRDB
* IMGT
* REBASE
* MHCPEP
* Histone Sequence Database
* PROMISE
* ORDB
* MEROPS
* InBase
* MITOP
* LIGAND
* RESID
* LGIC
* ENZYME
* KEYnet
* Wnt Database
* Endogenous GPCR List
* Prolysis
* PKR
* Peptaibol Database
* Kabat Database
* Membrane Protein Database
* PPMdb

## Protein sequence motifs

* PROSITE
* PRINTS
* Blocks Database
* HSSP
* Pfam
* SBASE
* ProDom
* TransTerm
* PhosphoBase
* O-GLYCBASE
* ProClass
* PIR-ALN
* SMART
* HIV Molecular Immunology Database

## Protein sequences

* PIR
* MIPS
* SWISS-PROT/TrEMBL
* HUGE
* The Homeodomain Resource
* AARSDB
* mitoDat

## Proteomics overview

* YPD
* SWISS-2DPAGE
* TMIG-2DPAGE

## RNA sequences

* tRNA Sequences
* PLMItRNA
* 5S rRNA Data Bank
* Small RNA Database
* The tmRNA Website
* tmRDB
* The Guide RNA Database
* U-insertion/deletion Edited Sequence Database
* Database on The Structure of Small Ribosomal Subunit RNA
* Database on The Structure of Large Ribosomal Subunit RNA
* The Viroid and Viroid-like RNA Database
* UTRdb
* The RNA Modification Database
* Collection of mRNA-like Non-coding RNAs
* RDP
* Yeast snoRNA Database

## Structure

* SRPDB
* DRC
* FSSP/Dali
* ISSD
* The Ribonuclease P Database
* ProTherm
* MMDB
* PRESAGE
* PDB
* CATH
* SCOP
* NDB
* DPInteract
* Database of Macromolecular Movements
* BMRB
* CSD
* HIC-Up
* LPFC
* Protein Motions Database
* BioImage

## Transgenics

* Cre Transgenic Database
* TBASE

## References

1. ↑ Burks, C. "Molecular Biology Database List." *Nucleic Acids Research* 27.1 (1999): 1-9. Print.