List of databases by NAR Molecular Biology Database Collection entry number

1. DDBJ
2. European Nucleotide Archive
3. GenBank
4. *Not assigned*
5. The Gene Indices
6. UniGene
7. COG - Clusters of Orthologous Groups of proteins
8. Homophila
9. *Not assigned*
10. *Not assigned*
11. *Not assigned*
12. *Not assigned*
13. Beta Cell Genomics
14. FlyView
15. GXD - Mouse Gene Expression Database
16. Interferon Stimulated Gene Database
17. Kidney Development Database
18. MAGEST
19. MethDB
20. Edinburgh Mouse (EMAP) Atlas
21. RECODE
22. Stanford Microarray Database
23. HugeIndex - Human Gene Expression Index
24. Gene Expression in Tooth Database
25. *Not assigned*
26. *Not assigned*
27. Ensembl
28. ASTD
29. *Not assigned*
30. CUTG - Codon Usage Tabulated from GenBank
31. DBTBS
32. EID: Exon-Intron Database
33. EPD
34. *Not assigned*
35. *Not assigned*
36. HS3D - Homo Sapiens Splice Sites Dataset
37. FLJ Human cDNA Database
38. HvrBase++
39. *Not assigned*
40. PLACE
41. PlantCARE
42. PromEC
43. rrnDB
44. *Not assigned*
45. rSNP Guide
46. SpliceDB
47. STRBase
48. Transterm
49. TRRD
50. *Not assigned*
51. WormBase
52. *Not assigned*
53. *Not assigned*
54. MapViewer
55. *Not assigned*
56. *Not assigned*
57. GenAtlas
58. *Not assigned*
59. *Not assigned*
60. *Not assigned*
61. *Not assigned*
62. *Not assigned*
63. ACeDB
64. MitoZoa
65. ArkDB
66. The Comprehensive Microbial Resource
67. UK CropNet
68. CyanoBase
69. EcoGene
70. *Not assigned*
71. FlyBase
72. DB-AT
73. Genenames
74. GOBASE
75. GOLD
76. HIV Sequence Database
77. Human BAC Ends Database
78. *Not assigned*
79. WhoGA
80. Legume Information System
81. *Not assigned*
82. *Not assigned*
83. *Not assigned*
84. MITOMAP
85. MitoRes
86. MITOP2
87. Mouse Genome Database (MGD)
88. MIPS resources
89. *Not assigned*
90. Oryzabase
91. PlasmoDB
92. *Not assigned*
93. Rat Genome Database
94. RsGDB
95. *Not assigned*
96. SubtiList
97. The *Arabidopsis*Information Resource (TAIR)
98. *Not assigned*
99. *Not assigned*
100. *Not assigned*
101. ZFIN
102. *Not assigned*
103. *Not assigned*
104. DIP - Database of Interacting Proteins
105. DRC - Database of Ribosomal Crosslinks
106. DPInteract
107. MPID-T2
108. EcoCyc
109. ENZYME
110. EpoDB - Erythropoiesis Database
111. *Not assigned*
112. KEGG - Kyoto Encyclopedia of Genes and Genomes
113. KEGG LIGAND Database
114. MetaCyc
115. *Not assigned*
116. RegulonDB
117. EAWAG-BBD
118. *Not assigned*
119. ALFRED
120. Androgen Receptor Gene Mutations Database
121. *Not assigned*
122. Atlas of Genetics and Cytogenetics in Oncology and Haematology
123. BTKbase
124. CASRDB
125. *Not assigned*
126. Database of Germline p53 Mutations
127. dbSNP
128. FLAGdb++
129. *Not assigned*
130. HaemB
131. GWAS Central
132. *Not assigned*
133. *Not assigned*
134. Human p53, human hprt, rodent lacI and rodent lacZ databases
135. Locus-specific variation database
136. Human PAX6 Allelic Variant Database
137. Collagen Mutation Database
138. KDBI
139. KinMutBase
140. *Not assigned*
141. *Not assigned*
142. NCL Resource
143. OMIM
144. PAHdb
145. PHEXdb
146. Protein Mutant Database
147. PTCH1 Mutation Database
148. RB1 Gene Mutation Database
149. *Not assigned*
150. *Not assigned*
151. *Not assigned*
152. Mouse Tumor Biology Database
153. *Not assigned*
154. Prostate Expression Database
155. Tumor Gene Family Databases (TGDBs)
156. Aminoacyl-tRNA synthetase database
157. ABCdb
158. *Not assigned*
159. *Not assigned*
160. RNA helicase Database
161. Endogenous GPCR List
162. ESTHER
163. EXProt
164. *Not assigned*
165. GenProtEC
166. GPCRDB
167. Histone Database
168. HIV Molecular Immunology Database
169. Homeobox Page
170. Homeodomain Resource
171. HUGE - Human Unidentified Gene-Encoded large proteins
172. IMGT
173. IMGT/HLA
174. InBase
175. *Not assigned*
176. LGICdb
177. MEROPS
178. *Not assigned*
179. *Not assigned*
180. *Not assigned*
181. MHCPEP
182. Nuclear Receptor Resource
183. *Not assigned*
184. Olfactory Receptor Database
185. ooTFD
186. Peptaibol
187. ELM
188. Protein kinase resource
189. PLANT-PIs
190. *Not assigned*
191. *Not assigned*
192. *Not assigned*
193. PROMISE
194. PIR - Protein Information Resource
195. Ribonuclease P Database
196. SENTRA
197. UniProt
198. *Not assigned*
199. TIGRFAMs
200. Hits
201. VIDA
202. Wnt Database
203. Blocks
204. CDD
205. CluSTr
206. *Not assigned*
207. InterPro
208. iProClass
209. O-GLYCBASE
210. Pfam
211. *Not assigned*
212. PRINTS
213. *Not assigned*
214. ProDom
215. PROSITE
216. *Not assigned*
217. SBASE
218. SMART
219. SUPFAM
220. SYSTERS
221. AAindex
222. GELBANK
223. Integr8 (formerly Proteome Analysis Database)
224. REBASE
225. SWISS-2DPAGE
226. MitoDrome
227. TESS
228. *Not assigned*
229. 16S and 23S Ribosomal RNA Mutation Database
230. 5S Ribosomal RNA Database
231. ACTIVITY
232. ARED
233. *Not assigned*
234. *Not assigned*
235. *Not assigned*
236. *Not assigned*
237. *Not assigned*
238. *Not assigned*
239. *Not assigned*
240. *Not assigned*
241. *Not assigned*
242. PseudoBase
243. Ribosomal Database Project (RDP-II)
244. RISSC - Ribosomal Internal Spacer Sequence Collection
245. RNA Modification Database
246. SELEXdb
247. *Not assigned*
248. SRPDB
249. *Not assigned*
250. tmRDB
251. tRNAdb
252. UTRdb/UTRsite
253. *Not assigned*
254. Yeast snoRNA Database
255. SCOPe
256. *Not assigned*
257. BioMagResBank
258. CATH
259. CE
260. *Not assigned*
261. CSD - Cambridge Structural Database
262. MolMovDB - Database of Macromolecular Movements
263. *Not assigned*
264. DSDBASE
265. HIC-Up
266. *Not assigned*
267. Jenalib: Jena Library of Biological Macromolecules
268. PDB facilities
269. LPFC
270. MMDB
271. *Not assigned*
272. NDB
273. NTDB
274. PALI
275. PASS2
276. PCSB Protein Data Bank
277. PDB-REPRDB
278. PDBsum
279. *Not assigned*
280. ProTherm
281. RESID
282. SCOP2 - Structural Classification Of Proteins
283. SCOR - Structural Classification Of RNA
284. *Not assigned*
285. SUPERFAMILY
286. Cre Transgenic Database
287. *Not assigned*
288. BAliBASE
289. *Not assigned*
290. *Not assigned*
291. *Not assigned*
292. UniCarbKB
293. HOX-PRO
294. Imprinted Gene Catalogue
295. *Not assigned*
296. MPDB - Molecular Probe Database
297. NCBI Taxonomy
298. PubMed
299. RIDOM - Ribosomal Differentiation of Medical Microorganisms
300. SWEET-DB
301. Tree of Life
302. VectorDB
303. VirOligo
304. WorfDB - Worm ORF Database
305. *Not assigned*
306. YDPM - Yeast Deletion Project
307. yMGV - Yeast microarray global viewer
308. ASPD
309. S/MARt DB
310. TOPS - Topology Of Protein Structures
311. TransportDB
312. trome, trEST and trGEN
313. TropGENE DB
314. TrSDB
315. TTD - Therapeutic Target Database
316. UCSC Genome Browser
317. *Not assigned*
318. UniProt
319. UniSTS
320. UniVec
321. *Not assigned*
322. GTOP - Genomes To Protein structures
323. *Not assigned*
324. HOWDY
325. GeneNote
326. GeneAnnot
327. GeneNest
328. GeneDB
329. GeneNet
330. GenePaint
331. ModBase
332. *Not assigned*
333. *Not assigned*
334. *Not assigned*
335. *Not assigned*
336. RiceGAAS
337. CORG - A database for COmparative Regulatory Genomics
338. ArrayExpress
339. MEPD: A Medaka gene expression pattern database
340. TRANSFAC®
341. TRANSPATH®
342. Yeast Intron Database
343. *Not assigned*
344. HapMap Project
345. TRANSCompel®
346. *Not assigned*
347. *Not assigned*
348. GeneLoc
349. *Not assigned*
350. GeneCards
351. GEnoPlante-Info
352. HGT-DB, Horizontal Gene Transfer-DataBase
353. IRIS - International Rice Information System
354. PEDANT
355. PlantGDB
356. RTPrimerDB
357. SGD - *Saccharomyces*Genome Database
358. SOURCE
359. ToxoDB - The *Toxoplasma gondii*Genome Database
360. Het-PDB Navi
361. *Not assigned*
362. IARC TP53 Database
363. GOLD.db - Genomics Of Lipid-associated Disorders
364. CSDBase - Cold Shock Domain database
365. HIV RT and Protease Sequence Database
366. HORDE - Human Olfactory Receptor Data Exploratorium
367. IPD - Immuno Polymorphism Database
368. Lipase Engineering Database
369. NPD - Nuclear Protein Database
370. *Not assigned*
371. PlantsP/PlantsT
372. SDAP
373. SEVENS
374. ASC - Active Sequence Collection
375. NESbase
376. NLSdb
377. *Not assigned*
378. Database for Bacterial Group II Introns
379. *Not assigned*
380. NCIR - Non-Canonical Interactions in RNA
381. ncRNAs database
382. Rfam
383. Subviral RNA Database
384. CADB - Conformational Angles DataBase of Proteins
385. Decoys-R-Us
386. DSMM - a Database of Simulated Molecular Motions
387. *Not assigned*
388. *Not assigned*
389. GOA
390. probeBase
391. RefSeq (microbial)
392. PharmGKB
393. *Not assigned*
394. AtGDB
395. STCDB - Signal Transduction Classification Database
396. euGenes
397. *Not assigned*
398. *Not assigned*
399. VKCDB - Voltage-gated K+ Channel Database
400. COG - Eukaryotic Orthologous Groups of proteins
401. 3D-Genomics
402. AANT - Amino Acid - Nucleotide interaction database (discontinued)
403. ACLAME - A Classification of Mobile genetic Elements
404. *Not assigned*
405. *Not assigned*
406. *Not assigned*
407. DAMPD
408. APD - Antimicrobial Peptide Database
409. ApiDots
410. AppaDB
411. Aptamer Database
412. ARAMEMNON
413. ArchDB
414. ASAP II
415. ASAP - A Systematic Annotation Package
416. *Not assigned*
417. *Not assigned*
418. BGI-RISe - Beijing Genomics Institute Rice Information System
419. BioCarta
420. BioCyc
421. BRENDA
422. *Not assigned*
423. BSD - Biodegradative Strain Database
424. BSORF - *Bacillus subtilis*Open Reading Frames
425. CADRE - Central Aspergillus Data Repository
426. *Not assigned*
427. CATMA - Complete Arabidopsis Transcriptome MicroArray
428. CCDB - The CyberCell Database
429. CCSD - Complex Carbohydrate Structure Database (CarbBank)
430. C. elegans Project
431. CGED - Cancer Gene Expression Database
432. CleanEx
433. *Not assigned*
434. CnidBase
435. COGEME Phytopathogenic Fungi and Oomycete EST Database
436. coliBASE
437. Colibri
438. COMe - Co-Ordination of Metals etc.
439. CryptoDB - *Cryptosporidium*database
440. CSA - Catalytic Site Atlas
441. CYGD - Comprehensive Yeast Genome Database
442. Dali database
443. DART - Drug Adverse Reaction Targets
444. DBSubLoc - Database of protein Subcellular Localization
445. DEG - Database of Essential Genes
446. DictyBase
447. DisProt - Database of Protein Disorder
448. DomIns - Database of Domain Insertions
449. *Drosophila*microarray centre
450. *Not assigned*
451. EBI Genomes
452. eF-site - Electrostatic surface of Functional site
453. *Not assigned*
454. *Not assigned*
455. *Not assigned*
456. PDBe
457. *Not assigned*
458. Entrez Genomes
459. Enzyme Nomenclature
460. ERGDB - Estrogen Responsive Genes Database
461. ERGO-Light
462. Essential genes in E. coli
463. European rRNA database
464. EyeSite
465. FANTOM
466. *Not assigned*
467. FlyTrap
468. *Not assigned*
469. *Not assigned*
470. FusionDB
471. GadFly
472. Gene3D
473. HCVDB - Hepatitis C Virus Database
474. *Not assigned*
475. *Not assigned*
476. *Not assigned*
477. *Not assigned*
478. *Not assigned*
479. Genetics Home Reference
480. Genetic Codes
481. GeneTrap
482. GenoBase
483. GÉnolevures
484. GIB-IS - Genome information broker
485. GermOnline
486. Glycan
487. GO
488. GrainGenes
489. Genomic Threading Database
490. GtRDB - Genomic tRNA Database
491. HbVar
492. HCV Database
493. HemBase
494. HemoPDB - Hematopoietic Promoter Database
495. HERVd - Human Endogenous Retrovirus database
496. HGVS Databases
497. HIV Drug Resistance Database
498. HOMSTRAD - Homologous Structure Alignment Database
499. HPMR - Human Plasma Membrane Receptome
500. HPRD - Human Protein Reference Database
501. IL2Rgbase
502. IMGT/3Dstructure-DB
503. IMGT/GENE-DB
504. IMGT/LIGM-DB
505. IMGT/PRIMER-DB
506. INFEVERS
507. IntAct
508. IntEnz
509. InterActive Fly
510. InterDom
511. *Not assigned*
512. *Not assigned*
513. IUBMB Nomenclature database
514. IUPAC Nomenclature database
515. IUPHAR-RD
516. JASPAR
517. JSNP
518. KinG: Kinases in Genomes
519. Knottin database
520. *Not assigned*
521. LeptoList
522. LIFEdb
523. Lowe Syndrome Mutation Database
524. LOX-DB
525. *Magnaporthe grisea*Database
526. MaizeGDB
527. MAtDB2
528. MBGD - Microbial Genome Database
529. miRBase
530. SSToSS - Sequence-Structural Templates of Single-member Superfamilies
531. YMPD
532. MitoProteome
533. MNCDB
534. MolliGen
535. Monosaccharide Browser
536. MOsDB
537. *Not Assigned*
538. MPIM - Mitochondrial Protein Import Machinery
539. *Medicago trunculata*Database
540. *Not assigned*
541. NASCarrays
542. NCBI Protein database
543. Helminth.net
544. NEMBASE
545. NetAffx
546. NucleaRDB
547. OGRe - Organellar Genome Retrieval
548. OMIA - Online Mendelian Inheritance in Animals
549. *Not assigned*
550. ORFDB
551. *Not assigned*
552. PANTHER
553. *Not assigned*
554. PathBase
555. PEC - Profiling of *E. coli*Chromosome
556. PEDE - Pig Expression Data Explorer
557. *Not assigned*
558. PEPR - Public Expression Profiling Resource
559. PGDB
560. PHYTOPROT
561. PIRSF
562. *Not assigned*
563. PlantProm
564. Plant snoRNA DB
565. PRF
566. PRODORIC
567. ProtoNet
568. RefExA
569. Rice Pipeline
570. RNAiDB
571. ROSPath
572. Rice Proteome Database
573. RPG - Ribosomal Protein Gene database
574. *Not assigned*
575. *Not assigned*
576. SCMD - Saccharomyces cerevisiae Morphological Database
577. SCPD - Saccharomyces cerevisiae promoter database
578. SeedGenes
579. SNP500Cancer
580. SpliceNest
581. *Not assigned*
582. STRING
583. Structure Superposition Database
584. SURFACE
585. SWISS-MODEL Repository
586. TcruziDB
587. THGS - Transmembrane Helices in Genome Sequences
588. Plant repeat database
589. TransMembrane Protein DataBase
590. TopoSNP
591. DBTSS
592. SKY/M-FISH and CGH
593. *Not assigned*
594. CarpeDB
595. dbQSNP
596. The Chromosome 7 Annotation Project
597. *Not assigned*
598. *Not assigned*
599. BarleyBase
600. Mammalian Gene Collection
601. Organelle genomes
602. NCBI Viral genomes
603. GEO - Gene Expression Omnibus
604. dbMHC
605. HomoloGene
606. 2D-PAGE
607. Gramene
608. PANDIT
609. ProLysED - Prokaryotic Lysis Enzymes Database
610. Brassica Genome
611. GenomeAtlas
612. Reactome
613. EzCatDB
614. Metagrowth
615. PDB-Ligand
616. PSIbase
617. CandidaDB
618. AGRIS - *Arabidopsis*Gene Regulatory Information Server
619. PDB\_TM
620. PoMaMo - Potato Maps and More
621. VBASE2
622. ADDA - A Domain Database
623. *Echo*BASE
624. CR-EST - Crop ESTs
625. RatMap
626. SNPeffect
627. *Not assigned*
628. *Oryza*Tag Line
629. siRNAdb
630. RNAdb
631. EDAS - EST-Derived Alternative Splicing Database
632. T1DBase - Type 1 Diabetes Database
633. 3DID - 3D interacting domains
634. *Not assigned*
635. AGD - *Ashbya*Genome Database
636. *Not assigned*
637. Arabidopsis Mitochondrial Protein Database
638. Arabidopsis Nucleolar Protein Database
639. *Not assigned*
640. ASRP - Arabidopsis Small RNA Project
641. BacMap
642. BCIpep
643. BeetleBase
644. BioSilico
645. Candida Genome Database
646. ChEBI - Chemical Entities of Biological Interest
647. ChickVD
648. *Not assigned*
649. Ciliate IES-MDS database
650. CoGenT++
651. COSMIC
652. CSS - Carbohydrate Structure Suite
653. CuticleDB
654. Cypriot national mutation database
655. Database of Genomic Variants
656. DATF
657. dbERGEII
658. *Not assigned*
659. *Not assigned*
660. *Not assigned*
661. DG-CST
662. Diatom EST Database
663. DoOP - Databases of Orthologous Promoters
664. hp-DPI
665. PhenomicDB
666. eBLOCKS
667. ECgene
668. Entrez Gene
669. FESD - Functional Elements SNPs Database
670. FlyMine
671. FunShift
672. GabiPD
673. *Not assigned*
674. GenDiS
675. GeneFarm
676. GeneTide
677. *Not assigned*
678. Genome Reviews
679. gpDB - G-protein database
680. HAGR - Human Ageing Genomic Resources
681. *Not assigned*
682. HaptenDB
683. HCAD - Human Chromosome Aberration Database
684. TRBase
685. H-Invitational Database, an integrated database of human genes and transcripts
686. HMPD
687. Hoppsigen
688. HPID - Human Protein Interaction database
689. HuSiDa - Human siRNA database
690. Inparanoid
691. IPD-MHC
692. IPD-ESTDAB
693. IPD-HPA - Human Platelet Antigens
694. IPD-KIR - Killer-cell Immunoglobulin-like Receptors
695. *Not assigned*
696. IPI - International Protein Index
697. L1Base
698. LumbriBASE
699. MAMEP - Molecular Anatomy of the Mouse Embryo Project
700. MAPPER
701. *Not assigned*
702. MHCBN
703. NegProt - Negative Proteome database
704. NMPdb - Nuclear matrix associated proteins database
705. NONCODE
706. NOPdb: Nucleolar Proteome Database
707. NPRD - Nucleosome Positioning Region Database
708. *Not assigned*
709. OncoMine
710. Open Proteomics Database
711. *Not assigned*
712. SAGEmap
713. Organelle DB
714. PA-GOSUB
715. PartiGeneDB
716. FCP
717. PDBSite
718. PDZBase
719. PFD - Protein Folding Database
720. *Not assigned*
721. *Not assigned*
722. PLprot
723. PolyA\_DB
724. Polymorphix
725. Poxvirus.org
726. PPNEMA
727. *Not assigned*
728. Primer Studio
729. *Not assigned*
730. PROPHECY
731. DynaProt 2D
732. ProTeus
733. Pseudomonas Genome Database
734. PSORTdb
735. PubChem
736. *Not assigned*
737. Rice Annotation Database
738. RARGE - RIKEN Arabidopsis Genome Encyclopedia
739. rOGED
740. *Not assigned*
741. *Not assigned*
742. *Not assigned*
743. *Not assigned*
744. SilkSatDb
745. Secreted Protein Database
746. SpliceInfo
747. SpodoBase
748. *Not assigned*
749. Protein-protein interfaces
750. T4-like genome database
751. TAED - The Adaptive Evolution Database
752. The Autism Chromosome Rearrangement Database
753. The Lafora Database
754. The Small Subunit rRNA Modification Database
755. TPMD - Taiwan polymorphic microsatellite marker database
756. TRACTOR db
757. TRED - Transcriptional Regulatory Element Database
758. *Not assigned*
759. PLPMDB
760. VFDB - Virulence Factors Database
761. VIPERdb
762. *Not assigned*
763. Yeast Resource Center
764. TargetDB
765. AthaMap
766. SGMD
767. FlyBrain
768. ALPSbase
769. *Not assigned*
770. Inter-Chain Beta-Sheets
771. CoPS
772. TECRdb
773. PINdb (discontinued)
774. Drosophila polymorphism database
775. UniParc
776. UniRef
777. KaryotypeDB
778. LOLA
779. IEDB
780. Arabidopsis MPSS
781. *Not assigned*
782. FUGOID
783. REFOLD
784. VEGA
785. STINGreport
786. BIOZON
787. SynDB
788. AlzGene
789. NURSA
790. TCDB
791. YGOB
792. YEASTRACT
793. CTGA
794. Cyclonet
795. ABS
796. AffinDB
797. *Not assigned*
798. Viral Bioinformatics Resource
799. AntiJen
800. BioGRID
801. BioModels
802. CAGE
803. ChimerDB
804. Chloroplast Genome Database
805. cisRED
806. Cybase
807. DBD
808. DBTGR
809. *Not assigned*
810. DPVweb
811. DrugBank
812. EMAGE
813. Epitome
814. EROP-Moscow
815. FGDB
816. FLIGHT
817. FlyRNAi
818. *Not assigned*
819. GLIDA
820. GRSDB
821. Hollywood
822. HPTAA
823. HTPSELEX
824. Human MtDB
825. HumHot
826. Interrupted coding sequences
827. International Gene Trap Consortium Database
828. IMG Genomes
829. IMOTdb
830. HOINVGEN
831. IRESite
832. Isfinder
833. ITTACA
834. LEGER
835. Lipid MAPS
836. LOCATE
837. MeGX
838. *Not assigned*
839. MFunGD
840. MODOMICS
841. *Not assigned*
842. MPromDB
843. Plant MPSS
844. MulPSSM
845. NPInter
846. ODB - Operon database
847. *Not assigned*
848. OryGenesDB
849. PANZEA
850. PepSeeker
851. PeptideAtlas
852. PHI-base
853. *Not assigned*
854. PINT
855. PMDB - Protein Model Database
856. PPD
857. PRIDE
858. pSTIING
859. QTL Matchmaker
860. RAP-DB
861. Rice Mutant Database
862. RNAi codex
863. SCOPPI
864. *Not assigned*
865. *Shi*Base
866. SIDDBase
867. SIMAP
868. SitesBase
869. snoRNA-LBME-db
870. SoyGD
871. StellaBase
872. TED - Tomato Expression Database
873. TGD - Tetrahymena Genome Database
874. TIGR Maize database
875. TreeFam
876. UCSC Archaeal Genome Browser
877. *Not assigned*
878. Greengenes
879. ABA - Ascidian Body Atlas
880. ARTADEdb
881. *Not assigned*
882. *Not assigned*
883. *Not assigned*
884. Comparative Genometrics
885. dbPTM
886. dbRIP
887. *Not assigned*
888. DRASTIC
889. EHCO
890. EndoNet
891. GFX-Macrophage Expression Atlas
892. DSD
893. MACiE
894. MamMiBase
895. miRNAMap
896. MtbRegList
897. I2D - Interologous Interaction Database
898. Pathguide
899. ProRule
900. RNA SSTRAND
901. RNRdb
902. SuperDrug
903. SuperNatural
904. TiProD
905. *Not assigned*
906. TreeBase
907. HDBase
908. SARS-CoV RNA SSS
909. Virus RefSeq
910. *Not assigned*
911. CCDS
912. TBestDB
913. ExtraTrain
914. iProLINK
915. BioThesaurus
916. Genome Project Database
917. ParameciumDB
918. GENSAT
919. SoyBase
920. *Not assigned*
921. NRESTdb
922. Tumor Associated Gene database
923. cpnDB
924. DroSpeGe
925. wFleaBase
926. Plant Ontology database
927. TassDB
928. DroID - Drosophila Interactions Database
929. Synthetic Gene Database
930. eSLDB - eukaryotic Subcellular Localization database
931. OriDB - The DNA Replication Origin Database
932. InSatDb
933. Patome
934. ATTED-II
935. GABI-Kat SimpleSearch database
936. PigGIS
937. U12DB
938. TMBETA-GENOME
939. GOPaD
940. TIGR Plant Transcript Assembly database
941. TOPOFIT-DB
942. *Not assigned*
943. *Not assigned*
944. PAIDB - Pathogenicity Island Database
945. Defensins Knowledgebase
946. CutDB
947. RegTransBase
948. POGs/PlantRBP
949. KBERG
950. MAPU
951. CancerGenes
952. MamPol
953. SYSTOMONAS
954. PIDD
955. Fungal Genome Size Database
956. Plant DNA C-values database
957. Animal Genome Size Database
958. PolymiRTS
959. MiST - Microbial Signal Transduction database
960. UniHI
961. WormBook
962. Sno/scaRNAbase
963. EVEREST - EVolutionary Ensembles of REcurrent SegmenTs
964. Sulfolobus
965. *Not assigned*
966. D-HaploDB
967. SuperHapten
968. VISTA Enhancer Browser
969. ApiDB - Apicomplexan DataBase
970. H-DBAS
971. ForestTreeDB
972. HepSeq
973. PolyDoms
974. AgBase
975. AnimalQTLdb
976. *Not assigned*
977. Bacterial CSDB (BCSDB)
978. Benchmark
979. BindingDB
980. CellCircuits
981. PhyloFacts
982. Cereal Small RNA Database
983. Comparasite
984. dbRES
985. ENCODE Project at UCSC
986. FireDB
987. *Not assigned*
988. GlycoMapsDB
989. GenomeRNAi
990. *Not assigned*
991. HMDB - The Human Metabolome Database
992. University of Pittsburgh Bioinformatics Resources Collection
993. IVDB - Influenza Virus Database
994. miRGen
995. Mouse Phenome Database
996. MvirDB
997. NATsDB
998. ORENZA
999. PathoPlant®
1000. PATRIC, the bacterial bioinformatics database and analysis resource
1001. PeroxisomeDB
1002. *Not assigned*
1003. Phospho3D
1004. *Not assigned*
1005. PReMod
1006. Pristionchus.org
1007. PseudoGene
1008. qPrimerDepot
1009. REDIdb
1010. SISYPHUS
1011. SNAP
1012. SNAPPI
1013. SNPSTR
1014. SUBA
1015. SwissRegulon
1016. TomatEST DB
1017. xanthusBase
1018. GeneTrees
1019. RetrOryza
1020. FINDbase
1021. InterFil
1022. MiCroKitS
1023. ChemDB
1024. ChemBank
1025. NEIBank
1026. OncoDB.HCC
1027. fRNAdb
1028. PlasmID
1029. MIPSPlantsDB
1030. SNP@Ethnos
1031. VectorBase
1032. MINT
1033. DOMINO
1034. euHCVdb
1035. TRDB
1036. GenomeTraFaC
1037. GeneSpeed
1038. *Not assigned*
1039. ViTa
1040. NMPDR - National Microbial Pathogen Data Resource
1041. 3D rRNA modification maps
1042. 3D-Interologs
1043. 4DXpress
1044. AlterORF
1045. Animal Toxin Database
1046. AtPID
1047. AutoPSI
1048. Bacteriome.org
1049. Binding MOAD
1050. Biodefense Proteomics Resource Center
1051. ViPR
1052. ButterflyBase
1053. CanGEM
1054. GEM2Net
1055. CEBS
1056. CFGP
1057. ChromDB
1058. CMGSDB
1059. ColiSNP (currently unavailable)
1060. CORUM
1061. CoVDB
1062. COXPRESdb
1063. CTCF Binding Site Database
1064. CycleBase
1065. DB-PABP
1066. DIMA
1067. DOMINE
1068. eggNOG
1069. EPGD
1070. ERIC
1071. EuroPhenome
1072. Evola
1073. FLYSNP
1074. F-SNP
1075. FunSimMat
1076. Gallus Gbrowse
1077. GenoList
1078. Genome Database for Rosaceae
1079. GISSD
1080. Glycoconjugate Data Bank
1081. GreenPhylDB
1082. Greglist
1083. GyDB
1084. HEG-DB
1085. Heme Protein Database
1086. HotSprint
1087. Human PAML Browser
1088. IDBD
1089. IMG/M
1090. ITS2
1091. LigAsite
1092. M3D
1093. MALISAM
1094. MegaMotifbase
1095. MetaCrop
1096. MethyCancer
1097. microRNA.org
1098. miRGator
1099. Mitome
1100. MSY Breakpoint Mapper
1101. MUGEN Mouse Database
1102. MutDB
1103. Narcisse
1104. NetworKIN
1105. NORINE
1106. OPTIC
1107. ORegAnno
1108. OrthoDB
1109. *Not assigned*
1110. PBmice
1111. PepCyber:P~Pep
1112. PhosPhAt
1113. PhylomeDB
1114. piRNABank
1115. Plant Organelles Database
1116. Plant Stress-Responsive Gene Catalog
1117. PlantTFDB
1118. PlantTribes
1119. ppdb
1120. PPT-DB
1121. PROCOGNATE
1122. ProSAS
1123. ProTISA
1124. ProtozoaDB
1125. PubMeth
1126. QuadBase
1127. R.E.DD.B.
1128. REDfly
1129. RNA FRABASE
1130. RNAJunction
1131. SelenoDB
1132. Shanghai Rapeseed Database
1133. SmedGD
1134. STITCH
1135. SuperCAT
1136. SuperTarget
1137. Telomerase database
1138. The Cell Cycle DB
1139. TMAD
1140. TopDB
1141. TransfactomeDB
1142. TranspoGene
1143. UCSD-Nature Signaling Gateway Molecule Pages
1144. UgMicroSatdb
1145. UniTrap
1146. UTGB/medaka
1147. UTRome
1148. VIOLIN
1149. Vir-Mir db
1150. X:MAP
1151. XenBase
1152. AphidBase
1153. BuchneraBase
1154. CREMOFAC
1155. Dockground
1156. DRTF
1157. ECRbase
1158. FlyTF
1159. MedicCyc
1160. Roundup
1161. Sebida
1162. siRecords
1163. SNP2NMD
1164. SPEED
1165. UniSave
1166. BACTIBASE
1167. CoryneRegNet
1168. CyMoBase
1169. DBAli
1170. dbLEP
1171. Déjà vu
1172. diArk
1173. GEISHA
1174. HmtDB - Human Mitochondrial DataBase
1175. PRRDB
1176. PRTAD
1177. PDBselect
1178. TDRtargets
1179. CIPRO
1180. GPCR NaVa database
1181. MMCD
1182. StrainInfo.net Bioportal
1183. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data
1184. YH database
1185. HuRef
1186. OKCAM
1187. Degradome Database
1188. CTD - Comparative Toxicogenomics Database
1189. ExplorEnz
1190. DDOC
1191. DiProDB
1192. JAIL
1193. ZiFDB
1194. BodyParts3D
1195. NRED
1196. SuperSite
1197. GiardiaDB.org
1198. Rice Gene Thresher
1199. GermSAGE
1200. PhyloPat
1201. CleanEST
1202. autoSNPdb
1203. TBDB
1204. PID
1205. PPDB: Plant Proteomics Database
1206. PhytAMP
1207. ARDB
1208. piSite
1209. UniPROBE
1210. HAMAP
1211. CAZy
1212. TMFunction
1213. CTDatabase
1214. Strepto\_DB
1215. CC+
1216. BPS
1217. CPDB
1218. PeroxiBase
1219. SchistoDB
1220. RAPID
1221. PMAP
1222. ATGC
1223. tRNADB-CE
1224. MachiBase
1225. SuperScent
1226. KineticDB
1227. ConsensusPathDB
1228. G2Cdb
1229. Human Proteinpedia
1230. UCbase and miRfunc
1231. SPROUTS
1232. miROrtho
1233. HIV-1
1234. miR2Disease
1235. *Not assigned*
1236. FlyEx
1237. MiMI
1238. DNAreplication.net
1239. MMsINC
1240. IUPHAR-DB
1241. RNA Virus Database
1242. HyperCLDB
1243. *Not assigned*
1244. Interferome
1245. P3DB
1246. Protein Clusters
1247. Virus Mentha
1248. *Not assigned*
1249. SNPlogic
1250. DOOR
1251. Pseudofam
1252. RsiteDB
1253. OligoArrayDb
1254. Selectome
1255. Voronoia
1256. MDPD
1257. SysZNF
1258. PAZAR
1259. *Not assigned*
1260. PSI-SGKB
1261. VirHostNet
1262. VarySysDB
1263. PIG - Pathogen Interaction Gateway
1264. TarBase
1265. HMDB
1266. EVOG
1267. CentrosomeDB
1268. ERGR
1269. ConSurf-DB
1270. metaTIGER
1271. MoKCa
1272. Protein Segment Finder
1273. Kinomer
1274. AutDB
1275. SysPIMP
1276. Sys-BodyFluid
1277. SuperToxic
1278. miRecords
1279. sRNAMap
1280. EciD
1281. BloodExpress
1282. Bionemo
1283. Minimotif Miner
1284. AS-ALPS
1285. PIPs
1286. HGPD
1287. Arabidopsis Hormone Database
1288. TcSNP
1289. Aspergillus Genomes
1290. ISED
1291. SpBase
1292. ReplicationDomain (alias ChromosomeDomain)
1293. Dynamic Proteomics
1294. Expression Atlas
1295. DNASU Plasmid Repository
1296. DOOR
1297. *Not assigned*
1298. BISC
1299. Brix
1300. BSDB
1301. BTO
1302. CancerResource
1303. cBARBEL
1304. ChemProt
1305. CLIPZ
1306. CPLM
1307. DAnCER
1308. DBASS5/3
1309. DDPC
1310. EDULISS
1311. EMDataBank
1312. FlyFactorSurvey
1313. FragmentStore
1314. HitPredict
1315. IEDB-3D
1316. IKMC
1317. KUPS
1318. LocDB
1319. MatrixDB
1320. MitoGenesisDB
1321. NGSmethDB
1322. NIAS
1323. OMPdb
1324. PAIR
1325. Pancreas Expression
1326. PmiRKB
1327. PRO
1328. Protegen
1329. RegPhos
1330. SCLD
1331. SolGenomics
1332. SuperSweet
1333. TADB
1334. TcoF-DB
1335. TOPSAN
1336. TRIP
1337. ViralZone
1338. VnD
1339. WebGeSTer DB
1340. EBI patent sequences
1341. 3D-Footprint
1342. RegPrecise
1343. TransmiR
1344. deepBase
1345. HHMD
1346. MeMotif
1347. ELM - Eukaryotic Linear Motif: functional sites in eukaryotic proteins
1348. SuperCYP
1349. NNDB
1350. 3DNALandscapes
1351. Protein Geometry Database
1352. PTGL
1353. fPOP
1354. ComSin
1355. Protein Naming Utility
1356. phiSITE
1357. ViralORFeome
1358. MicrobesOnline
1359. AspGD
1360. TriTrypDB
1361. MetaBioME
1362. SMPDB
1363. IBIS
1364. Negatome
1365. GWIDD
1366. PepX
1367. DRYGin
1368. NCBI BioSystems
1369. Mousebook
1370. INFRAFRONTIER
1371. Gene Wiki
1372. Patrocles
1373. Network of Cancer Genes
1374. dbDEPC
1375. HLungDB
1376. SelTarbase
1377. HRTBLDb
1378. GeneSigDB
1379. FlyTED
1380. PLANdbAffy
1381. GeMInA
1382. BioNumbers
1383. T3DB
1384. BioDrugScreen
1385. CAMP
1386. PrimerBank
1387. PlnTFDB
1388. PRGdb
1389. PNRD
1390. AntigenDB
1391. MouseIndelDB
1392. Allele Frequency Net
1393. AmoebaDB
1394. ArachnoSever
1395. AREsite
1396. Allosteric Database
1397. ASPicDB
1398. Autophagy Database
1399. Bovine Genome
1400. CADgene