xeniumranger / experiment.xenium
khersameesh24's picture
Upload 9 files
0f6dde7 verified
raw
history blame contribute delete
No virus
1.33 kB
{
"major_version": 2,
"minor_version": 0,
"run_name": "morphology_focus",
"region_name": "cell_circles",
"experiment_uuid": "",
"panel_tissue_type": "N/A",
"run_start_time": "N/A",
"preservation_method": "N/A",
"num_cells": 36602,
"transcripts_per_cell": 0,
"transcripts_per_100um": 0,
"cassette_name": "N/A",
"slide_id": "N/A",
"panel_design_id": "N/A",
"panel_name": "N/A",
"panel_organism": "Human",
"panel_num_targets_predesigned": 0,
"panel_num_targets_custom": 0,
"pixel_size": 0.2125,
"instrument_sn": "N/A",
"instrument_sw_version": "N/A",
"analysis_sw_version": "xenium-1.3.0.5",
"cassette_uuid": "",
"roi_uuid": "",
"z_step_size": 3.0,
"well_uuid": "",
"calibration_uuid": "N/A",
"images": {
"morphology_filepath": "morphology.ome.tif",
"morphology_mip_filepath": "morphology_mip.ome.tif",
"morphology_focus_filepath": "morphology_focus.ome.tif"
},
"xenium_explorer_files": {
"transcripts_zarr_filepath": "transcripts.zarr.zip",
"cells_zarr_filepath": "cells.zarr.zip",
"cell_features_zarr_filepath": "cell_feature_matrix.zarr.zip",
"analysis_zarr_filepath": "analysis.zarr.zip",
"analysis_summary_filepath": "analysis_summary.html"
}
}