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add eval to readme

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  1. README.md +20 -1
README.md CHANGED
@@ -14,6 +14,10 @@ configs:
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  data_files:
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  - split: finetuning
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  path: "proteins_finetuning.csv"
 
 
 
 
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  - config_name: research
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  data_files:
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  - split: research
@@ -75,6 +79,21 @@ Removed PubMed reference numbers to avoid training models to hallucinate PubMed
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  In the current state of plant genomics research, about half of the finetuning split are from rice and related
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  species, a fifth are from Papilionoideae/Faboideae, and seven taxa have less than 1% each.
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  ## Research split
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  Proteins from quinoa (~99%), cañihua, and the three species of amaranth which are currently grown for grain.
@@ -93,5 +112,5 @@ Understanding reviewed/unreviewed proteins: https://www.uniprot.org/help/uniprot
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  The reviewed sequences are often similar to unreviewed sequences from related species and accessions, and are not suitable to test predicting/infilling/completion.
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  Species include inedible wild relatives.<br/>
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- Some people have allergic reactions to wheat/gluten, nightshades, maize, and other crops.<br/>
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  Chili peppers can be painfully spicy.
 
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  data_files:
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  - split: finetuning
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  path: "proteins_finetuning.csv"
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+ - config_name: evaluation
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+ data_files:
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+ - split: evaluation
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+ path: "proteins_evaluation.csv"
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  - config_name: research
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  data_files:
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  - split: research
 
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  In the current state of plant genomics research, about half of the finetuning split are from rice and related
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  species, a fifth are from Papilionoideae/Faboideae, and seven taxa have less than 1% each.
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+ ## Evaluation split
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+
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+ **Reviewed proteins (Swiss-Prot)** from other genera (avocado, carrot, cassava, lychee, prunus (i.e. peaches, cherries, plums)).
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+ Each row contains a gene name, species or subspecies, an amino acid sequence, and comments / annotations available in UniProt.
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+
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+ A gene name may match multiple entries on UniProt from different accessions.
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+
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+ Annotations may be empty, or may include information such as:
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+
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+ - likely function, written in English
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+ - location inside of cell (e.g. "Subcellular locations: Vacuole")
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+ - locations in the plant (e.g. "Expressed in roots, stems")
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+
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+ Removed PubMed reference numbers to avoid training models to hallucinate PubMed references.
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+
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  ## Research split
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  Proteins from quinoa (~99%), cañihua, and the three species of amaranth which are currently grown for grain.
 
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  The reviewed sequences are often similar to unreviewed sequences from related species and accessions, and are not suitable to test predicting/infilling/completion.
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  Species include inedible wild relatives.<br/>
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+ Some people have allergic reactions to wheat/gluten, nightshades, maize, lychee, and other crops.<br/>
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  Chili peppers can be painfully spicy.