monsoon-nlp commited on
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add research split

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  1. README.md +6 -3
  2. proteins_research.csv +3 -0
README.md CHANGED
@@ -12,6 +12,8 @@ configs:
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  path: "proteins_pretraining.csv"
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  - split: finetuning
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  path: "proteins_finetuning.csv"
 
 
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  ---
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  # GreenBeing Proteins dataset
@@ -64,11 +66,12 @@ Removed PubMed reference numbers to avoid training models to hallucinate PubMed
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  In the current state of plant genomics research, about half of the finetuning split are from rice and related
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  species, a fifth are from Papilionoideae/Faboideae, and seven taxa have less than 1% each.
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- ## Research split (TODO)
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-
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- Formatted like the finetuning split, but with proteins from quinoa and amaranth.
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  ## Limitations and Safety Notes
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  path: "proteins_pretraining.csv"
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  - split: finetuning
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  path: "proteins_finetuning.csv"
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+ - split: research
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+ path: "proteins_research.csv"
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  ---
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  # GreenBeing Proteins dataset
 
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  In the current state of plant genomics research, about half of the finetuning split are from rice and related
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  species, a fifth are from Papilionoideae/Faboideae, and seven taxa have less than 1% each.
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+ ## Research split
 
 
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+ Proteins from quinoa (~99%), cañihua, and the three species of amaranth which are currently grown for grain.
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+ Columns contain UniProt/TrEMBL gene names, species, and the amino acid sequence.
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+ Large proteins are split into a new row every 8,000 letters.
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  ## Limitations and Safety Notes
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proteins_research.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:3fa7a4a2c9607efdfeced744711b5a459970cc4aa7b04920cace98ef2680131f
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+ size 15755155