task_categories:
- image-classification
- image-segmentation
- feature-extraction
- zero-shot-classification
- fill-mask
size_categories:
- 10K<n<100K
tags:
- biology
- cells
- radiation
- microscopy
- GeneLab
Dataset Card for Dataset GeneLab_BPS_BenchmarkData
Dataset Details
This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/
Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.
Dataset Description
- Curated by: Frank Soboczenski
- Funded by [optional]: [More Information Needed]
- Shared by [optional]: [More Information Needed]
- Language(s) (NLP): [More Information Needed]
- License: There are no restrictions on the use of this data.
Further Documentation
Update Frequency
New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.
Dataset Structure
GeneLab_BPS_BenchmarkData/
├── README.md
└── data/
├── High_Energy_Ion_Fe_Nuclei/
│ └── .tif
│ └── ...
└── XRay_irradiated_Nucleiation/
└── .tif
└── ...
How to Cite
Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData
Publications
- Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Ex Vivo Introducing Novel DNA Damage Metrics by Sébastien Penninckx, Egle Cekanaviciute, Charlotte Degorre, Elodie Guiet, Louise Viger, Stéphane Lucasb, Sylvain V. Costes
- NASA SMD AI Workshop Report by SMD Artificial Intelligence (AI) Initiative
Dataset Card Authors [optional]
Lauren Sanders (lauren.m.sanders@nasa.gov)
Dataset Card Contact
Frank Soboczenski (Frank.Soboczenski@york.ac.uk)