Update embeddings JSON using reproducible script (#12)

- Update embeddings generated by reproducible script and simplified template (cfba7afca53f61b586f92068255f198e89208a4c)

embeddings/README.md

@@ -4,10 +4,10 @@
 
 ## Taxonomic JSON Construction
 
-The `JSON` was created from the [TreeOfLife-200M catalog](../catalog.parquet) through the following process:
+The `JSON` was created from the [TreeOfLife-200M catalog](../catalog.parquet) and [`VernacularName.tsv` component of the GBIF Backbone Taxonomy](https://doi.org/10.15468/39omei)  using [`make_txt_embedding_json.py`](https://github.com/Imageomics/TreeOfLife-toolbox/blob/main/processing/scripts/make_txt_embedding_json.py) through the following process:
 * **Null Value Filtering:** Remove records where `kingdom` or `species` are `null`.
 * **Deduplication:** Rows are deduplicated based on the combination of `kingdom`, `phylum`, `class`, `order`, `family`, `genus`, and `species`. This ensures that each unique taxonomic combination appears exactly once.
-    * **Common Name Handling:** Currently, the source metadata often contains multiple common names for a single unique taxonomic combination. During processing, **the first common name encountered** for a given unique taxonomic combination is retained. We plan future improvements to establish a definitive 1-to-1 mapping or a more comprehensive common name strategy.
+    * **Common Name Handling:** Currently, the catalog metadata often contains multiple common names for a single unique taxonomic combination. During processing, **the first English common name encountered** for a given unique taxonomic combination is retained. If English is not available, the first option of any language is used. We plan future improvements to establish a definitive 1-to-1 mapping or a more comprehensive common name strategy.
 
 ### Structure
 

embeddings/txt_emb_species.json

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embeddings/txt_emb_species.npy

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