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--- |
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task_categories: |
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- image-classification |
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tags: |
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- butterfly |
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- heliconius |
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- dorsal |
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- ventral |
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- RGB |
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- full body |
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- separated wings |
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- mimicry |
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- CV |
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pretty_name: Meier Subset of Jiggins Data |
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size_categories: |
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- 10K<n<100K |
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--- |
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# Dataset Card for Meier Subset of Jiggins Data |
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## Dataset Description |
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- **Homepage:** |
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- **Repository:** |
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- **Paper:** |
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- **Leaderboard:** |
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- **Point of Contact:** |
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### Dataset Summary |
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Subset of the collection records from the research group of Chris Jiggins at the University of Cambridge derived from almost 20 years of field studies. |
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This subset contains approximately 34,000 RGB images across all Heliconius. Many records include images as well as locality data. |
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All detached wings were photographed with a DSLR camera with a 100 mm macro-lens in standardized conditions; images and full records with data are stored in the [EarthCape database](https://heliconius.ecdb.io/default.aspx) and on [Zenodo](https://doi.org/10.5281/zenodo.4289223). |
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Both dorsal and ventral images available. Contains both whole butterfly, and 4 wings separate. Large variation in image content. |
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<!--- |
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This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1). |
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---> |
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### Supported Tasks and Leaderboards |
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[More Information Needed] |
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### Languages |
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[More Information Needed] |
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## Dataset Structure |
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* **Jiggins_Zenodo_Img_Master.csv:** Information for the approximately 34,000 unprocessed image files included in the Jiggins Heliconius Collection. |
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* To access the images combine columns `zenodo_link` and `Image_name`: |
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``` |
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zenodo_link + '/files/' + Image_name |
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``` |
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### Data Instances |
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Multiple species of Heliconius including erato and melpomene. |
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Detached wings in four quadrants (generally). |
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Some subspecies may be photographed differently, needs segmentation preprocessing. |
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* **Type:** JPG/jpg/tif(very few) |
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* **Size (x pixels by y pixels):** Unknown yet |
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* **Background (color or none):** multiple (needs to be normalised) |
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* **Fit in frame:** |
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* **Ruler or Scale:** Some with Ruler |
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* **Color (ColorChecker, white-balance, None):** None |
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#### Preprocessing steps (to be done): |
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1. Hybrid separation - some images labeled as H.erato and H. melpomene without subspecies names are hybrids and need to be determined what subspecies they are. |
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2. Label correction - along with step 1. |
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3. Removal of subspecies with no mimic pairs. |
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4. Segmentation of four wings from images so we can focus on forewings vs hindwings: [WingSeg](https://github.com/agporto/WingSeg). |
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Current preprocessing steps: [WingSeg](https://github.com/agporto/WingSeg) on the [Meier subset](https://huggingface.co/datasets/imageomics/Meier-Subset-Jiggins/). |
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### Data Fields |
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[More Information Needed] |
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### Data Splits |
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[More Information Needed] |
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## Dataset Creation |
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### Curation Rationale |
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[More Information Needed] |
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### Source Data |
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Image subset of the [collection records](https://doi.org/10.5281/zenodo.4289222) from the research group of Chris Jiggins at the University of Cambridge derived from almost 20 years of field studies. |
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#### Initial Data Collection and Normalization |
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[More Information Needed] |
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#### Who are the source language producers? |
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[More Information Needed] |
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### Annotations |
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#### Annotation process |
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[More Information Needed] |
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#### Who are the annotators? |
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[More Information Needed] |
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### Personal and Sensitive Information |
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None |
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## Considerations for Using the Data |
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### Social Impact of Dataset |
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[More Information Needed] |
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### Discussion of Biases |
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[More Information Needed] |
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### Other Known Limitations |
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[More Information Needed] |
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## Additional Information |
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### Dataset Curators |
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* Christopher Lawrence (Princeton University) - ORCID: 0000-0002-3846-5968 |
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* Chris Jiggins (University of Cambridge) - ORCID: 0000-0002-7809-062X |
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* Butterfly Genetics Group (University of Cambridge) |
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### Licensing Information |
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[More Information Needed] |
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### Citation Information |
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Christopher Lawrence, Chris Jiggins, Butterfly Genetics Group (University of Cambridge). (2023). Jiggins_Heliconius_Collection. Hugging Face. https://huggingface.co/datasets/imageomics/Meier-Subset-Jiggins. |
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If you use this dataset, please cite the original dataset (citation below) as well as this curated subset. |
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Gabriela Montejo-Kovacevich, Eva van der Heijden, Nicola Nadeau, & Chris Jiggins. (2020). Cambridge butterfly wing collection batch 10. Zenodo. https://doi.org/10.5281/zenodo.4289223 |
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### Contributions |
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The [Imageomics Institute](https://imageomics.org) is funded by the US National Science Foundation's Harnessing the Data Revolution (HDR) Institute program under [Award #2118240](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2118240) (Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning). |
