Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,26 @@
|
|
| 1 |
---
|
| 2 |
license: mit
|
| 3 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
license: mit
|
| 3 |
---
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
# Otter DUDe Dataset Card
|
| 7 |
+
Otter DUDe includes 1,452,568 instances of drug-target interactions.
|
| 8 |
+
|
| 9 |
+
## Dataset details
|
| 10 |
+
#### DUDe
|
| 11 |
+
DUDe comprises a collection of 22,886 active compounds and their corresponding affinities towards 102 targets. For our study, we utilized a preprocessed version of the DUDe \cite{sledzieski2022adapting}, which includes 1,452,568 instances of drug-target interactions. To prevent any data leakage, we eliminated the negative interactions and the overlapping triples with the TDC DTI dataset. As a result, we were left with a total of 40,216 drug-target interaction pairs.
|
| 12 |
+
|
| 13 |
+
**Paper or resources for more information:**
|
| 14 |
+
- [GitHub Repo](https://github.com/IBM/otter-knowledge)
|
| 15 |
+
|
| 16 |
+
**License:**
|
| 17 |
+
|
| 18 |
+
MIT
|
| 19 |
+
|
| 20 |
+
**Where to send questions or comments about the dataset:**
|
| 21 |
+
- [GitHub Repo](https://github.com/IBM/otter-knowledge)
|
| 22 |
+
|
| 23 |
+
**Models trained on Otter UBC**
|
| 24 |
+
- [ibm/otter_dude_classifier](https://huggingface.co/ibm/otter_dude_classifier)
|
| 25 |
+
- [ibm/otter_dude_distmult](https://huggingface.co/ibm/otter_dude_distmult)
|
| 26 |
+
- [ibm/otter_dude_transe](https://huggingface.co/ibm/otter_dude_transe)
|