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https://api.github.com/repos/kubeflow/pipelines/issues/8873 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8873/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8873/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8873/events | https://github.com/kubeflow/pipelines/issues/8873 | 1,593,414,708 | I_kwDOB-71UM5e-ZQ0 | 8,873 | [sdk] Not Able to Run Sequential Steps with Optional Flags in KFP v2 | {
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"/assign @connor-mccarthy ",
"@rahuja23, I'm not sure I understand what you mean by optional flag. Can you explain? If possible, can you create a minimal reproducible example of the behavior you suspect is a bug?",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-21T12:42:50" | "2023-08-26T07:42:15" | null | NONE | null | ### Environment
* KFP version:
kfp 2.0.0b12
* KFP SDK version:
kfp-pipeline-spec 0.2.0
kfp-server-api 2.0.0a6
```
### Steps to reproduce
from kfp.components import load_component_from_file
@component(
base_image=base_image, packages_to_install=["kfp"]
)
def gold_ingredients_processor():
import logging
from datetime import datetime
from src import version
from src.constants.HyperParameters import GoldingredientsParameters
from src.constants.ApplicationConstants import ApplicationConstants
from src.shared.ReadConfiguration import ReadConfiguration
from src.shared.GenericUtil import GenericUtil
from src.goldingredientsprocessor.GoldIngredientsProcessorTrain import GoldIngredientsProcessorTrain
from src.goldingredientsprocessor import model_name, model_version
from kfp.v2 import dsl
def start_training(iso_code, enable_persist_results):
logging.info("Starting Training")
logging.info(f"Using Foodgraph version {version}")
logging.info(f"Using model {model_name} version: {model_version} for country {iso_code}")
gold_ingredient_processor = GoldIngredientsProcessorTrain(
enable_persist_results=enable_persist_results,
iso_code=iso_code
)
gold_ingredient_processor.fit()
logging.info("Completed the Gold Ingredients Images Processor Step")
# config = ReadConfiguration()
# gold_ingredient_processor_parameters = GenericUtil.get_module_parameters(
# parameters=GoldingredientsParameters, iso_code=iso_code
# )
# test_name = f"Gold-Ingredients-Processor-{datetime.now().strftime('%Y-%m-%d-%H-%M-%S')}"
# ModelUtil.upload_experiment(iso_code=iso_code, test_name=test_name,
# hyper_parameter=gold_ingredient_processor_parameters,
# metric=None)
logging.basicConfig(
format="%(asctime)s %(levelname)-8s %(message)s",
level=logging.INFO,
datefmt="%Y-%m-%d %H:%M:%S",
)
logging.getLogger().setLevel(logging.INFO)
op =start_training(ApplicationConstants.GERMANY_ISO_CODE, True)
return op
@component(
base_image=base_image
)
def data_preprocessor_train():
import logging
from datetime import datetime
from src import version
from src.datapreprocessor import model_name, model_version
from src.datapreprocessor.DataPreprocessorTrain import DataPreprocessorTrain
from src.constants.ApplicationConstants import ApplicationConstants
from src.shared.ReadConfiguration import ReadConfiguration
from src.constants.PipelineFiles import PipelineFiles
from src.shared.ModelUtil import ModelUtil
from src.shared.GenericUtil import GenericUtil
from src.constants.HyperParameters import DataPreprocessorParameters
def start_training(iso_code, enable_persist_results):
logging.info("Starting Training")
logging.info(f"Using Foodgraph version {version}")
logging.info(f"Using model {model_name} version: {model_version} for country {iso_code}")
config = ReadConfiguration()
data_preprocessor = DataPreprocessorTrain(
iso_code=iso_code,
enable_persist_results=enable_persist_results,
)
data_preprocessor.fit()
data_preprocessor_model_parameters = GenericUtil.get_module_parameters(
parameters=DataPreprocessorParameters, iso_code=iso_code
)
test_name = f"Data-Preprocessor-{datetime.now().strftime('%Y-%m-%d-%H-%M-%S')}"
ModelUtil.upload_experiment(iso_code=iso_code, test_name=test_name,
hyper_parameter=data_preprocessor_model_parameters,
metric=None)
if data_preprocessor.config.persist_data_preprocessor_stopwords:
ModelUtil.upload_model(
file_name=PipelineFiles.STOPWORDS_FILENAME,
model=data_preprocessor.stopwords_idf_df,
bucket_name=config.gcs_bucket,
version=version,
local_model_location=config.models_directory,
iso_code=iso_code,
experiment_run=None,
model_name=model_name,
)
if data_preprocessor.config.persist_short_ingredients:
ModelUtil.upload_model(
file_name=PipelineFiles.SHORT_INGREDIENTS_FILE,
model=data_preprocessor.short_ingredients,
bucket_name=config.gcs_bucket,
version=version,
local_model_location=config.models_directory,
iso_code=iso_code,
experiment_run=None,
model_name=model_name,
)
logging.basicConfig(
format="%(asctime)s %(levelname)-4s %(message)s",
level=logging.INFO,
datefmt="%Y-%m-%d %H:%M:%S",
)
logging.getLogger().setLevel(logging.INFO)
start_training(ApplicationConstants.GERMANY_ISO_CODE, True)
@kfp.v2.dsl.pipeline(name="foodgraph-training-pipeline", pipeline_root=PIPELINE_ROOT)
def my_pipeline_new( articles_to_ing_flag: bool = False,
data_preprocessor_flag: bool= True,
gold_ingredient_processor_flag: bool= False,
gap_analysis_flag: bool= False,
ingredient_normaliser_flag: bool= False,
menu_items_to_recipe_flag: bool= False,
recipes_to_ing_flag: bool= False):
with dsl.Condition(gold_ingredient_processor_flag == True) as C:
op1= gold_ingredients_processor().set_display_name("Gold-Ingredient-Processor").set_cpu_limit('50').set_memory_limit('75')
with dsl.Condition(data_preprocessor_flag == True):
op2 = data_preprocessor_train().set_display_name("Article-Ingredient").set_cpu_limit('50').set_memory_limit('75').after(C)
import os
from datetime import datetime
from pathlib import Path
from google.cloud import aiplatform
import json
if __name__ == "__main__":
kfp.v2.compiler.Compiler().compile(pipeline_func=my_pipeline_new)
run = aiplatform.PipelineJob(
project="hd-dwh-vertex-prod-17624",
enable_caching=False,
location="europe-west3",
display_name="food-training-pipeline",
template_path=filename,
job_id=f"test-pipeline-{datetime.now().strftime('%Y-%m-%d-%H-%M-%S')}",
pipeline_root=f"gs://dev-vertex-foodgraph-model-artifacts",
parameter_values=json.dumps({'articles_to_ing_flag': True,
'data_preprocessor_flag': True,
'gold_ingredient_processor_flag': False}),
)
run.submit(service_account="vertex-ai@hd-dwh-vertex-prod-17624.iam.gserviceaccount.com")
```
### Expected result
The step "data_preprocessor_train()" should run skipping the first step i.e. gold_ingredients but none of the steps run if the first flag is set to false.
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8872 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8872/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8872/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8872/events | https://github.com/kubeflow/pipelines/issues/8872 | 1,591,976,149 | I_kwDOB-71UM5e46DV | 8,872 | [bug] Not able to change base_image for hyperparameter_tuning_job experimental components (GetTrialsOp, GetBestTrialOp, etc) | {
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"@RansSelected, as a short term fix, I suggest you either (1) fork the component and change the code yourself or (2) modify the object in-memory to override the image tag.",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-20T14:31:57" | "2023-08-26T07:42:17" | null | NONE | null | * KFP version:
1.8.19 and earlier ones
### Steps to reproduce
- I'm constructing a Vertex AI pipeline;
- I'm using Hyperparameter tuning components in my pipeline;
- I have the very strict vpc-sc settings; if I want to use components such as GetBestTrialOp, etc from
https://github.com/kubeflow/pipelines/blob/37b3397aee374f5ea29665de7839e09e1462e794/components/google-cloud/google_cloud_pipeline_components/experimental/hyperparameter_tuning_job/utils.py
I only have the option to use predefined base_image and it also will try to install some packages; but because of vpc-sc I don;t have access to the public pypi;
- pipeline is failing because there is no way to modify the base image in experimental components from hyperparameter_tuning_job utils; also, there seems to be no way to specify to install packages that experimental component will try to install from the private pypi;
### Expected result
- I can specify image for the components in hyperparameter_tuning_job utils (GetBestTrialOp, GetBestHyperparametersOp, etc)
- I can specify private artifact registry for hyperparameter_tuning_job utils (GetBestTrialOp, GetBestHyperparametersOp, etc) component to load python packages from it;
---
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"Hi @anifort!\r\nTo resolve it, please upgrade the `kfp` package to 2.0.0-b12"
] | "2023-02-20T13:04:36" | "2023-02-24T00:00:28" | "2023-02-24T00:00:28" | NONE | null | ### Description
KFP installation also install dependencies. this include kfp-server-api. It seems that kfp-server-api 2.0.0.b0 is now the required version for kfp 2.0.0.bX however the 2 are not compatible as kfp is attempting to use an attribute from kfp-server-api thad does not exist.
### Environment
* KFP version: 2.0.0.b11. (But other 2.0.0.bx also have the same issue)
* KFP SDK version: 2.0.0.b11
* All dependencies version:
kfp 2.0.0b11 \
kfp-pipeline-spec 0.2.0 \
kfp-server-api 2.0.0b0
### Steps to reproduce
pip install kfp==2.0.0.b11
python -c "import kfp"
*the import errors with:*
```
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/aniftos/Projects/propensity-modeling/.venv/lib/python3.10/site-packages/kfp/__init__.py", line 23, in <module>
from kfp.client import Client
File "/Users/aniftos/Projects/propensity-modeling/.venv/lib/python3.10/site-packages/kfp/client/__init__.py", line 20, in <module>
from kfp.client.client import Client
File "/Users/aniftos/Projects/propensity-modeling/.venv/lib/python3.10/site-packages/kfp/client/client.py", line 58, in <module>
class JobConfig:
File "/Users/aniftos/Projects/propensity-modeling/.venv/lib/python3.10/site-packages/kfp/client/client.py", line 61, in JobConfig
self, spec: kfp_server_api.ApiPipelineSpec,
AttributeError: module 'kfp_server_api' has no attribute 'ApiPipelineSpec'. Did you mean: 'ApiPipeline'?
```
### Expected result
to be able to import kfp without errors
### Materials and Reference
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"Any updates on this ?\r\n",
"This is not planned for KFPv2. Instead of the above approach, you can use Scalar metrics https://www.kubeflow.org/docs/components/pipelines/v1/sdk/output-viewer/#scalar-metrics to achieve the same goal. You can define any amount of metrics with any value.",
"I would very much support the integration of scalar metrics in the experimental overview table just as it was done in v1. If you optimize a perticular metrics it helps a lot to see it directly in the table. Especially because the metric comparison view is arranged horizontally which reduces the number of visible run greatly for a large number of runs."
] | "2023-02-20T07:23:45" | "2023-08-03T10:19:30" | null | NONE | null | How to get something like this (below image) in Kubeflow pipeline version 1.8.5 ( python kfp version 2 )?
![image](https://user-images.githubusercontent.com/42741300/220033777-dc809a71-2b3e-4554-b209-bd702bc89328.png)
Currently in the experiment dashboard , I don't see any metrics in the experiment section of the page like in the image above. Is this feature (metrics in column format) removed ?
<img width="1265" alt="image" src="https://user-images.githubusercontent.com/42741300/220033385-9294c251-4b59-4f3f-9dde-9bc9ce23f145.png">
Code snippet :
```
def produce_metrics(
# Note when the `create_component_from_func` method converts the function to a component, the function parameter "mlpipeline_metrics_path" becomes an output with name "mlpipeline_metrics" which is the correct name for metrics output.
mlpipeline_metrics_path: Output[Metrics],
):
import json
accuracy = 0.9
metrics = {
'metrics': [{
'name': 'accuracy-score', # The name of the metric. Visualized as the column name in the runs table.
'numberValue': accuracy, # The value of the metric. Must be a numeric value.
'format': "PERCENTAGE", # The optional format of the metric. Supported values are "RAW" (displayed in raw format) and "PERCENTAGE" (displayed in percentage format).
}]
}
with open(mlpipeline_metrics_path.path, 'w') as f:
json.dump(metrics, f)
```
I would love if we can filter and sort on metrics for a pipeline in an experiment.
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"@MatthewRalston: The label(s) `area/component` cannot be applied, because the repository doesn't have them.\n\n<details>\n\nIn response to [this](https://github.com/kubeflow/pipelines/issues/8868):\n\n>### Environment\r\n>\r\n>\r\n>Minikube v1.28.0\r\n>kubernetes 1.22.2\r\n>Kustomize v3.2.0\r\n>kubectl v1.25.5\r\n>Manifests v1.6.1\r\n>\r\n> KFP SDK version:\r\n>\r\n> All dependencies version:\r\n>\r\n>kfp 2.0.0b9\r\n>kfp-pipeline-spec 0.1.16\r\n>kfp-server-api 2.0.0a6\r\n>\r\n>### Steps to reproduce\r\n>\r\n>From arch Linux\r\n>\r\n>```bash\r\n>yay -S minikube docker containerd minio\r\n>```\r\n>\r\n>\r\n>\r\n>* `/etc/docker/daemon.json`\r\n>```json\r\n>{\r\n> \"exec-opts\": [\"native.cgroupdriver=systemd\"],\r\n> \"log-driver\": \"json-file\",\r\n> \"log-opts\": {\r\n>\t\"max-size\": \"100m\"\r\n> },\r\n> \"data-root\": \"/var/lib/docker\",\r\n> \"storage-driver\": \"overlay2\",\r\n> \"rootless\": false\r\n>}\r\n>```\r\n>\r\n>* Default configurations otherwise, except Minio service paths/users\r\n>\r\n>1. Launch minikube\r\n>2. Enable istio\r\n>3. `istioctl install --set revision=canary`\r\n>4. Use Kustomize to install Kubeflow 1.6 manifests\r\n>5. Port-fowarding \r\n>6. Use Kubeflow/pipelines dashboard to invoke a python kfp pipeline.\r\n>\r\n>\r\n>* `components/gunzip.yaml`\r\n>```yaml\r\n>name: gunzip\r\n>description: Gunzips an Input file to an Ouput filepath\r\n>inputs:\r\n>- {name: infile, type: String, description: 'Data for gzip decompression'}\r\n>outputs:\r\n>- {name: Output, type: String, description: 'Output decompressed plaintext'}\r\n>implementation:\r\n> container:\r\n> image: alpine:latest\r\n> # command is a list of strings (command-line arguments). \r\n> # The YAML language has two syntaxes for lists and you can use either of them. \r\n> # Here we use the \"flow syntax\" - comma-separated strings inside square brackets.\r\n> command: [\r\n> sh,\r\n> -c,\r\n> zcat,\r\n> {inputPath: infile},\r\n> '>',\r\n> {outputPath: Output}\r\n> ]\r\n>\r\n>```\r\n>\r\n>* `pipeline.py`\r\n>```python\r\n>#!/bin/env python\r\n>\r\n>import os\r\n>import sys\r\n>import argparse\r\n>\r\n>import kfp.dsl as dsl\r\n>import kfp.components as comp\r\n>import kfp\r\n>\r\n>\r\n>\r\n>import logging\r\n>global logger\r\n>logger = None\r\n>\r\n>def get_root_logger(level):\r\n> levels=[logging.WARNING, logging.INFO, logging.DEBUG]\r\n> if level < 0 or level > 2:\r\n> raise TypeError(\"{0}.get_root_logger expects a verbosity between 0-2\".format(__file__))\r\n> logging.basicConfig(level=levels[level], format=\"%(levelname)s: %(asctime)s %(funcName)s L%(lineno)s| %(message)s\", datefmt=\"%Y/%m/%d %I:%M:%S\")\r\n> root_logger = logging.getLogger()\r\n> return root_logger\r\n>\r\n>\r\n>\r\n>components_dir = os.path.join(os.path.dirname(__file__), \"components\")\r\n>\r\n>gunzip = comp.load_component_from_file(os.path.join(components_dir, \"gunzip.yaml\"))\r\n>echo = comp.load_component_from_file(os.path.join(components_dir, \"echo.yaml\"))\r\n>\r\n>is_unzip_needed = comp.load_component_from_file(os.path.join(components_dir, \"is_unzip_needed.yaml\"))\r\n>\r\n>\r\n>@dsl.pipeline(\r\n> name='kubeflow-barebone-demo',\r\n> description='kubeflow demo with minimal setup'\r\n>)\r\n>def rnaseq_pipeline(fastq1:str):\r\n> # Step 1: training component\r\n>\r\n> echo1 = echo(infile=fastq1).set_cpu_request('1').set_cpu_limit('1').set_memory_request('512Mi').set_memory_limit('512Mi')\r\n> #gunzip1 = gunzip(infile=fastq1).set_cpu_request('1').set_cpu_limit('1').set_memory_request('512Mi').set_memory_limit('512Mi')\r\n>\r\n>\r\n> \r\n>\r\n>if __name__ == \"__main__\":\r\n> logger = get_root_logger(2)\r\n> \r\n> kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')\r\n>\r\n>```\r\n>\r\n>\r\n>\r\n>\r\n>\r\n>\r\n>\r\n>\r\n>### Expected result\r\n>\r\n>Expected behavior should be that Kubeflow + manifests handles the creation of output `tmp` directories. I did not get an appropriate answer from [issue](https://github.com/kubeflow/pipelines/issues/8782). Either the requirement for users to create their own directories (as @chensun suggested) should be a documented *feature* of Kubeflow, or the correct way to handle file outputs with MinIO should be well documented. I'm a fairly tech savvy average user of Kubeflow, and with about 8+ hours in the documentation, I'm running into a crippling bug for my small business. Namely, the correct way to pass data from one step to antother, saving the output in the `/tmp/Output/output` directory. If that's where Kubeflow wants to put output datasets:\r\n>\r\n>* why can't it also manage the creation of such a directory?\r\n>* Is this a kubeflow or manifests issue?\r\n>* What would be the proper way to produce/retrieve kfp outputs using 1.8 kfp syntax?\r\n>\r\n>### Materials and reference\r\n>\r\n>\r\n>![Screenshot from 2023-01-28 10-33-36](https://user-images.githubusercontent.com/4308024/219900360-a637789d-4040-4799-9fa7-967b05ea4c2f.png)\r\n>\r\n>### Labels\r\n>\r\n>\r\n>\r\n>/area backend\r\n>/area sdk\r\n>/area testing\r\n>\r\n>/area component\r\n>\r\n>---\r\n>\r\n>\r\n>Impacted by this bug? Give it a ๐. \n\n\nInstructions for interacting with me using PR comments are available [here](https://git.k8s.io/community/contributors/guide/pull-requests.md). If you have questions or suggestions related to my behavior, please file an issue against the [kubernetes/test-infra](https://github.com/kubernetes/test-infra/issues/new?title=Prow%20issue:) repository.\n</details>",
"> Either the requirement for users to create their own directories (as @chensun suggested) should be a documented feature of Kubeflow, or the correct way to handle file outputs with MinIO should be well documented.\r\n\r\nAgree that we could have done a better job on documentation, but the need of `mkdir` was indeed show cased in the [documentation](https://www.kubeflow.org/docs/components/pipelines/v1/sdk/component-development/) as well as [numerous component samples](https://github.com/kubeflow/pipelines/search?q=%22mkdir+-p%22).\r\n(Note: above is for KFP v1, v2 has a different syntax I'll explain shortly)\r\n\r\n> why can't it also manage the creation of such a directory?\r\n\r\nThis is by design for KFP v1, while I don't know the full history or limitation, my understanding is a component that runs as a container is fully responsible for the file i/o happened within the container, the orchestration engine (Argo) only picks up artifacts and persists them in object store (Minio) post execution. \r\n\r\n> Is this a kubeflow or manifests issue?\r\n\r\nNeither, (as explained above)\r\n\r\n> What would be the proper way to produce/retrieve kfp outputs using 1.8 kfp syntax?\r\n\r\nAssuming you refer to KFP SDK 1.8 and import from `kfp` namespace (instead of `kfp.v2` namespace), user code needs to make directories of output paths. \r\nIf you're importing from `kfp.v2` namespace in KFP SDK 1.8, or if you are using KFP SDK 2.0, for Python-function component (created via `@component` decorator), you don't need to make directories--that's handled by our injected executor code that runs in the same container prior to the execution of user code. For more details about v2 syntax, please check: https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/component-io/\r\n\r\nHope this clarifies.",
"Thank you, this clarifies quite a bit. I will visit this during the week and close if I cannot manage the syntax issues between v1.8 (which I am using) or the v2 SDK.",
"First of all @chensun , I noticed that the documentation needs revision. Here is my minimal example:\r\n\r\n\r\nhttps://www.kubeflow.org/docs/components/pipelines/v1/sdk/component-development/\r\nStraight from the documentation:\r\n\r\n```\r\ndef gunzip_func(ifile, ofile):\r\n for line in ifile:\r\n ofile.write(line)\r\n\r\n logger.info(\"Decompression completed...\")\r\n\r\n return\r\n\r\n\r\n\r\n\r\n\r\n@dsl.pipeline(\r\n name='kubeflow-barebone-demo',\r\n description='kubeflow demo with minimal setup'\r\n)\r\ndef rnaseq_pipeline(fastq1:str, decompressed_fastq1:str):\r\n Path(str(decompressed_fastq1)).parent.mkdir(parents=True, exist_ok=True)\r\n\r\n\r\n with gzip.open(fastq1) as ifile:\r\n with open(decompressed_fastq1, 'w') as ofile:\r\n gunzip_func(ifile, ofile)\r\n\r\nif __name__ == \"__main__\":\r\n logger = get_root_logger(2)\r\n \r\n kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')\r\n\r\n```\r\n\r\n\r\n\r\n\r\n```\r\nTraceback (most recent call last):\r\n File \"./pipeline.py\", line 73, in <module>\r\n kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')\r\n File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1178, in compile\r\n package_path=package_path)\r\n File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1229, in _create_and_write_workflow\r\n pipeline_conf)\r\n File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1005, in _create_workflow\r\n pipeline_func(*args_list, **kwargs_dict)\r\n File \"./pipeline.py\", line 62, in rnaseq_pipeline\r\n with gzip.open(fastq1) as ifile:\r\n File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/gzip.py\", line 57, in open\r\n raise TypeError(\"filename must be a str or bytes object, or a file\")\r\nTypeError: filename must be a str or bytes object, or a file\r\n```\r\n\r\n\r\n",
"It seems like the example produces a wrapper (PipelineParam), which I'm assuming implements its own `open` interface). This is not compatible with gzip. No matter what I try, I cannot use either Python or the following container interface to decompress a file. \r\n\r\n```yaml\r\nname: gunzip\r\ndescription: Gunzips an Input file to an Ouput filepath\r\ninputs:\r\n- {name: infile, type: String, description: 'Data for gzip decompression'}\r\noutputs:\r\n- {name: Output, type: String, description: 'Output decompressed plaintext'}\r\nimplementation:\r\n container:\r\n image: alpine:latest\r\n # command is a list of strings (command-line arguments). \r\n # The YAML language has two syntaxes for lists and you can use either of them. \r\n # Here we use the \"flow syntax\" - comma-separated strings inside square brackets.\r\n command: [\r\n sh,\r\n -c,\r\n mkdir,\r\n --parents,\r\n '$(dirname ',\r\n {outputPath: Output},\r\n ')',\r\n '&&',\r\n zcat,\r\n {inputPath: infile},\r\n '>',\r\n {outputPath: Output}\r\n ]\r\n```\r\n\r\n\r\nAGAIN the real issue is that kfp, as you stated above, requires the following directory to be created *INDEPENEDENTLY OF THE DATASET HANDLING*. It's a smell.\r\n\r\n```\r\n/tmp/outputs/Output/\r\n```\r\n\r\nAs you can see, the directory should be created in the container code above, but it fails with the following:\r\n\r\n```\r\ntime=\"2023-03-01T14:41:04.951Z\" level=error msg=\"cannot save artifact /tmp/outputs/Output/data\" argo=true error=\"stat /tmp/outputs/Output/data: no such file or directory\"\r\n```\r\n\r\nInstead it fails *before* the zcat command on the mkdir command. THe mkdir command :\r\n\r\n\r\n```yaml\r\n 'mkdir -p $(dirname ',\r\n {outputPath: Output}\r\n ')'\r\n```\r\n\r\n\r\nHere is the containerspec from the logs\r\n```\r\n {\"description\": \"Gunzips an Input file to an Ouput filepath\",\r\n \"implementation\": {\"container\": {\"command\": [\"sh\", \"-c\", \"echo 'mkdir\r\n --parents \\\\$(dirname $output) && zcat $input '\", {\"outputPath\":\r\n \"Output\"}, \"&&\", \"mkdir --parents $(dirname \", {\"outputPath\": \"Output\"},\r\n \")\", \"&&\", \"zcat\", {\"inputPath\": \"infile\"}, \">\", {\"outputPath\":\r\n \"Output\"}], \"image\": \"alpine:latest\"}}, \"inputs\": [{\"description\": \"Data\r\n for gzip decompression\", \"name\": \"infile\", \"type\": \"String\"}], \"name\":\r\n \"gunzip\", \"outputs\": [{\"description\": \"Output decompressed plaintext\",\r\n \"name\": \"Output\", \"type\": \"String\"}]}\r\n```",
"[Full script] (https://gist.github.com/MatthewRalston/b6049e34812d36cfa554036f05ae1d3b)",
"Is this related to the jsonification of the command into a shell command?",
"@chensun is there anything else I can do here? Do I need to instantiate my own volume or something?",
"> First of all @chensun , I noticed that the documentation needs revision. Here is my minimal example:\r\n> \r\n> https://www.kubeflow.org/docs/components/pipelines/v1/sdk/component-development/ Straight from the documentation:\r\n> \r\n> ```\r\n> def gunzip_func(ifile, ofile):\r\n> for line in ifile:\r\n> ofile.write(line)\r\n> \r\n> logger.info(\"Decompression completed...\")\r\n> \r\n> return\r\n> \r\n> \r\n> \r\n> \r\n> \r\n> @dsl.pipeline(\r\n> name='kubeflow-barebone-demo',\r\n> description='kubeflow demo with minimal setup'\r\n> )\r\n> def rnaseq_pipeline(fastq1:str, decompressed_fastq1:str):\r\n> Path(str(decompressed_fastq1)).parent.mkdir(parents=True, exist_ok=True)\r\n> \r\n> \r\n> with gzip.open(fastq1) as ifile:\r\n> with open(decompressed_fastq1, 'w') as ofile:\r\n> gunzip_func(ifile, ofile)\r\n> \r\n> if __name__ == \"__main__\":\r\n> logger = get_root_logger(2)\r\n> \r\n> kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')\r\n> ```\r\n> \r\n> ```\r\n> Traceback (most recent call last):\r\n> File \"./pipeline.py\", line 73, in <module>\r\n> kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')\r\n> File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1178, in compile\r\n> package_path=package_path)\r\n> File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1229, in _create_and_write_workflow\r\n> pipeline_conf)\r\n> File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/site-packages/kfp/compiler/compiler.py\", line 1005, in _create_workflow\r\n> pipeline_func(*args_list, **kwargs_dict)\r\n> File \"./pipeline.py\", line 62, in rnaseq_pipeline\r\n> with gzip.open(fastq1) as ifile:\r\n> File \"/home/matt/.pyenv/versions/miniconda3-4.7.12/lib/python3.7/gzip.py\", line 57, in open\r\n> raise TypeError(\"filename must be a str or bytes object, or a file\")\r\n> TypeError: filename must be a str or bytes object, or a file\r\n> ```\r\n\r\nPlease go through the documentation you referenced again. This code is not straight from the doc, and you missed a key point that a component is a containerized app and a basic building block for pipelines. A pipeline may consists of only components and kfp.dsl syntax, but not arbitrary Python code like you had. Those Python code would be executed at compilation time, while the pipeline and components are meant to be executed at pipeline runtime (when submitted to the backend system).",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-19T03:53:47" | "2023-08-26T07:42:19" | null | NONE | null | ### Environment
Minikube v1.28.0
kubernetes 1.22.2
Kustomize v3.2.0
kubectl v1.25.5
Manifests v1.6.1
KFP SDK version:
All dependencies version:
kfp 2.0.0b9
kfp-pipeline-spec 0.1.16
kfp-server-api 2.0.0a6
### Steps to reproduce
From arch Linux
```bash
yay -S minikube docker containerd minio
```
* `/etc/docker/daemon.json`
```json
{
"exec-opts": ["native.cgroupdriver=systemd"],
"log-driver": "json-file",
"log-opts": {
"max-size": "100m"
},
"data-root": "/var/lib/docker",
"storage-driver": "overlay2",
"rootless": false
}
```
* Default configurations otherwise, except Minio service paths/users
1. Launch minikube
2. Enable istio
3. `istioctl install --set revision=canary`
4. Use Kustomize to install Kubeflow 1.6 manifests
5. Port-fowarding
6. Use Kubeflow/pipelines dashboard to invoke a python kfp pipeline.
* `components/gunzip.yaml`
```yaml
name: gunzip
description: Gunzips an Input file to an Ouput filepath
inputs:
- {name: infile, type: String, description: 'Data for gzip decompression'}
outputs:
- {name: Output, type: String, description: 'Output decompressed plaintext'}
implementation:
container:
image: alpine:latest
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
sh,
-c,
zcat,
{inputPath: infile},
'>',
{outputPath: Output}
]
```
* `pipeline.py`
```python
#!/bin/env python
import os
import sys
import argparse
from pathlib import Path
import gzip
import kfp.dsl as dsl
import kfp.components as comp
import kfp
components_dir = os.path.join(os.path.dirname(__file__), "components")
gunzip = comp.load_component_from_file(os.path.join(components_dir, "gunzip.yaml"))
echo = comp.load_component_from_file(os.path.join(components_dir, "echo.yaml"))
is_unzip_needed = comp.load_component_from_file(os.path.join(components_dir, "is_unzip_needed.yaml"))
@dsl.pipeline(
name='kubeflow-barebone-demo',
description='kubeflow demo with minimal setup'
)
def rnaseq_pipeline(fastq1:str):
#Path(str(decompressed_fastq1)).parent.mkdir(parents=True, exist_ok=True)
gunzip1 = gunzip(infile=fastq1).set_cpu_request('1').set_cpu_limit('1').set_memory_request('512Mi').set_memory_limit('512Mi')
if __name__ == "__main__":
logger = get_root_logger(2)
kfp.compiler.Compiler().compile(rnaseq_pipeline, 'pipeline.yaml')
```
### Expected result
Expected behavior should be that Kubeflow + manifests handles the creation of output `tmp` directories. I did not get an appropriate answer from [issue](https://github.com/kubeflow/pipelines/issues/8782). Either the requirement for users to create their own directories (as @chensun suggested) should be a documented *feature* of Kubeflow, or the correct way to handle file outputs with MinIO should be well documented. I'm a fairly tech savvy average user of Kubeflow, and with about 8+ hours in the documentation, I'm running into a crippling bug for my small business. Namely, the correct way to pass data from one step to antother, saving the output in the `/tmp/Output/output` directory. If that's where Kubeflow wants to put output datasets:
* why can't it also manage the creation of such a directory?
* Is this a kubeflow or manifests issue?
* What would be the proper way to produce/retrieve kfp outputs using 1.8 kfp syntax?
### Materials and reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
![Screenshot from 2023-01-28 10-33-36](https://user-images.githubusercontent.com/4308024/219900360-a637789d-4040-4799-9fa7-967b05ea4c2f.png)
### Labels
<!-- Please include labels below by uncommenting them to help us better triage issues -->
<!-- /area frontend -->
/area backend
/area sdk
/area testing
<!-- /area samples -->
/area component
---
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-18T00:19:10" | "2023-08-26T07:42:21" | null | MEMBER | null | The majority of the backend code has test coverage under 90%, although pre-submit test-coverage is often expected to be above it and it is sometimes reasonable to expect >95% coverage. While enforcing high coverage is impractical, we have an opportunity to improve gradually improve the situation.
---
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"Any updates on this ?",
"/cc @connor-mccarthy to investigate more.",
"/assign @chensun ",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-17T07:07:00" | "2023-08-26T07:42:23" | null | NONE | null | So I have a component where I need to save a dataframe as an output. So I used this code in my component
```
with open(f'{prediction_path.path}.csv', 'wb') as f:
df.to_csv(path_or_buf=f)
```
But I am getting this error
```
W0217 06:53:10.959325 73 launcher.go:560] Local filepath "/minio/mlpipeline/test/pipeline/product-recommend-5/b34809bb-e5e2-4a92-aa1c-e6622fef4bc8/test/prediction_path" does not exist
```
Pickling does work here if I use
```
with open(f'{prediction_path.path}', 'wb') as f:
pickle.dump(df, f)
```
But I want to save and read artifacts in original file format. How do I achieve this in Kubeflow cluster? On vertex I am able to do this but not working in kubeflow cluster
My component looks likes this
```
@component(
packages_to_install = package_list,
base_image="python:3.9",
output_component_file="test_model.yaml"
)
def test(
model_path: Input[Dataset],
test_dataset: Input[Dataset],
prediction_path: Output[Dataset]
):
import pandas as pd
import pickle
with open(f'{test_dataset.path}', 'rb') as f:
validation_df = pickle.load(f)
with open(f'{model_path.path}', 'rb') as f:
model = pickle.load(f)
# do something and generate a dataframe df
with open(f'{prediction_path.path}.csv', 'wb') as f:
df.to_csv(path_or_buf=f)
```
I am using Kubeflow pipelines installed on local mac os with minio storage.
Version: [1.8.5](https://www.github.com/kubeflow/pipelines/commit/8382cb027c49ac0f8981b20c70e50783a3a9dab1)
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] | "2023-02-15T19:28:56" | "2023-08-26T07:42:26" | null | COLLABORATOR | null | null | {
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"starred_url": "https://api.github.com/users/b4sus/starred{/owner}{/repo}",
"subscriptions_url": "https://api.github.com/users/b4sus/subscriptions",
"organizations_url": "https://api.github.com/users/b4sus/orgs",
"repos_url": "https://api.github.com/users/b4sus/repos",
"events_url": "https://api.github.com/users/b4sus/events{/privacy}",
"received_events_url": "https://api.github.com/users/b4sus/received_events",
"type": "User",
"site_admin": false
} | [
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"node_id": "MDU6TGFiZWwxMDczMTUzOTA4",
"url": "https://api.github.com/repos/kubeflow/pipelines/labels/kind/bug",
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"name": "area/backend",
"color": "d2b48c",
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"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
"starred_url": "https://api.github.com/users/gkcalat/starred{/owner}{/repo}",
"subscriptions_url": "https://api.github.com/users/gkcalat/subscriptions",
"organizations_url": "https://api.github.com/users/gkcalat/orgs",
"repos_url": "https://api.github.com/users/gkcalat/repos",
"events_url": "https://api.github.com/users/gkcalat/events{/privacy}",
"received_events_url": "https://api.github.com/users/gkcalat/received_events",
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"followers_url": "https://api.github.com/users/gkcalat/followers",
"following_url": "https://api.github.com/users/gkcalat/following{/other_user}",
"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
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"repos_url": "https://api.github.com/users/gkcalat/repos",
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"received_events_url": "https://api.github.com/users/gkcalat/received_events",
"type": "User",
"site_admin": false
}
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"url": "https://api.github.com/repos/kubeflow/pipelines/milestones/8",
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} | [
"Same Issue on listing kubeflow pipelines thought UI. I was forced to update to 2.0.0-beta.0 because of AWS S3 IRSA support introduced in this update but now I'm totally blocked by this issue",
"I had the listing issue as well, I guess that for this the fix will come eventually from manifests, but I could fix it with creating a cluster role binding like this:\r\n```shell\r\nkubectl create clusterrolebinding my-kubeflow-pipelines-edit --clusterrole=kubeflow-pipelines-edit --user=user@example.com\r\n```\r\nCluster-role `kubeflow-pipelines-edit` is already there from manifests (I guess `kubeflow-pipelines-view`) would suffice.",
"I solved it for now by downgrading back to alpha.6. But thanks for the great idea!",
"@gkcalat Looks like this bug was introduced by https://github.com/kubeflow/pipelines/pull/8633 PR. Can you look on it?",
"> I had the listing issue as well, I guess that for this the fix will come eventually from manifests, but I could fix it with creating a cluster role binding like this:\r\n> \r\n> ```shell\r\n> kubectl create clusterrolebinding my-kubeflow-pipelines-edit --clusterrole=kubeflow-pipelines-edit --user=user@example.com\r\n> ```\r\n> \r\n> Cluster-role `kubeflow-pipelines-edit` is already there from manifests (I guess `kubeflow-pipelines-view`) would suffice.\r\n\r\nThat didn't work for me",
"> @gkcalat Looks like this bug was introduced by #8633 PR. Can you look on it?\r\n\r\n@sergeyshevch, thanks for pointing this out. This change has been reverted and the fix will be included in the next 2.0.0-beta.2 release, which is going to happen by the end of this week. This particular issue, however, seems to be unrelated.\r\n\r\n@b4sus, @amybachir , the original error suggests that `user@example.com` doesn't have access to `kubeflow-user-example-com`. Perhaps, you were running a default sample (the provided link is broken) as these names are used as default placeholders? \r\n\r\nIn full Kubeflow (multi-user) mode, KFP assumes that a user has access to a k8s namespace. It is created when you open the dashboard UI for the first time. For example, creating a run sends a POST request to the backend with authentication header that carries information required to authorize.\r\n\r\nPlease, test out the next release and reopen this issue if it persists. Thank you!",
"Tested on beta.2 - issue still happens - PR submitted #9365 "
] | "2023-02-15T13:50:33" | "2023-05-09T06:28:32" | "2023-05-04T23:53:27" | CONTRIBUTOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
Installed following kubeflow manifests installation - master version (currently identical to tag v1.7.0-rc.0) of manifests with beta.0 instead of alpha.6 version of kubeflow pipeline components.
* KFP version:
2.0.0-beta.0
* KFP SDK version:
2.0.0b12
### Steps to reproduce
Run pipeline like described in [pipelines documentation](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/).
The call to `create_run_from_pipeline_func` fails with following error:
```
HTTP response body: {"error":"Failed to create a new v1beta1 run: Failed to create a run due to authorization error. Check if you have write permissions to namespace kubeflow-user-example-com: PermissionDenied: User 'user@example.com' is not authorized with reason: (request: \u0026ResourceAttributes{Namespace:kubeflow-user-example-com,Verb:create,Group:,Version:,Resource:pipelines,Subresource:,Name:,}): Unauthorized access","code":7,"message":"Failed to create a new v1beta1 run: Failed to create a run due to authorization error. Check if you have write permissions to namespace kubeflow-user-example-com: PermissionDenied: User 'user@example.com' is not authorized with reason: (request: \u0026ResourceAttributes{Namespace:kubeflow-user-example-com,Verb:create,Group:,Version:,Resource:pipelines,Subresource:,Name:,}): Unauthorized access","details":[{"@type":"type.googleapis.com/google.rpc.Status","code":7,"message":"User 'user@example.com' is not authorized with reason: (request: \u0026ResourceAttributes{Namespace:kubeflow-user-example-com,Verb:create,Group:,Version:,Resource:pipelines,Subresource:,Name:,})"}]}
```
The roles and binding created from manifest look correct. After some digging I found that problem comes from [here](https://github.com/kubeflow/pipelines/blob/2.0.0-beta.0/backend/src/apiserver/server/run_server.go#L132) :
```go
resourceAttributes := &authorizationv1.ResourceAttributes{
Namespace: run.Namespace,
Verb: common.RbacResourceVerbCreate,
Resource: common.RbacResourceTypePipelines,
}
if err := s.resourceManager.IsAuthorized(ctx, resourceAttributes); err != nil {
return nil, util.Wrapf(err, "Failed to create a run due to authorization error. Check if you have write permissions to namespace %s", run.Namespace)
}
```
The `resourceAttributes` doesn't specify `Group`.
After adding `Group: common.RbacPipelinesGroup,` (`common.RbacPipelinesGroup` being `pipelines.kubeflow.org`) to attributes, building the docker image and using it instead of `gcr.io/ml-pipeline/api-server:2.0.0-beta.0` I run to exactly same problem [in other place](https://github.com/kubeflow/pipelines/blob/2.0.0-beta.0/backend/src/apiserver/server/pipeline_server.go#L122). Again, the group added, image built, pushed, used, the pipeline is running.
Problem could in other places as well.
### Expected result
Pipeline runs
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8853 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8853/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8853/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8853/events | https://github.com/kubeflow/pipelines/issues/8853 | 1,585,152,945 | I_kwDOB-71UM5ee4Ox | 8,853 | [backend] ReportWorkflow attempts to create duplicate entries in | {
"login": "gkcalat",
"id": 35157096,
"node_id": "MDQ6VXNlcjM1MTU3MDk2",
"avatar_url": "https://avatars.githubusercontent.com/u/35157096?v=4",
"gravatar_id": "",
"url": "https://api.github.com/users/gkcalat",
"html_url": "https://github.com/gkcalat",
"followers_url": "https://api.github.com/users/gkcalat/followers",
"following_url": "https://api.github.com/users/gkcalat/following{/other_user}",
"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
"starred_url": "https://api.github.com/users/gkcalat/starred{/owner}{/repo}",
"subscriptions_url": "https://api.github.com/users/gkcalat/subscriptions",
"organizations_url": "https://api.github.com/users/gkcalat/orgs",
"repos_url": "https://api.github.com/users/gkcalat/repos",
"events_url": "https://api.github.com/users/gkcalat/events{/privacy}",
"received_events_url": "https://api.github.com/users/gkcalat/received_events",
"type": "User",
"site_admin": false
} | [
{
"id": 1073153908,
"node_id": "MDU6TGFiZWwxMDczMTUzOTA4",
"url": "https://api.github.com/repos/kubeflow/pipelines/labels/kind/bug",
"name": "kind/bug",
"color": "fc2515",
"default": false,
"description": ""
},
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"url": "https://api.github.com/repos/kubeflow/pipelines/labels/area/backend",
"name": "area/backend",
"color": "d2b48c",
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"avatar_url": "https://avatars.githubusercontent.com/u/35157096?v=4",
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"url": "https://api.github.com/users/gkcalat",
"html_url": "https://github.com/gkcalat",
"followers_url": "https://api.github.com/users/gkcalat/followers",
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"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
"starred_url": "https://api.github.com/users/gkcalat/starred{/owner}{/repo}",
"subscriptions_url": "https://api.github.com/users/gkcalat/subscriptions",
"organizations_url": "https://api.github.com/users/gkcalat/orgs",
"repos_url": "https://api.github.com/users/gkcalat/repos",
"events_url": "https://api.github.com/users/gkcalat/events{/privacy}",
"received_events_url": "https://api.github.com/users/gkcalat/received_events",
"type": "User",
"site_admin": false
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"login": "gkcalat",
"id": 35157096,
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"avatar_url": "https://avatars.githubusercontent.com/u/35157096?v=4",
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"url": "https://api.github.com/users/gkcalat",
"html_url": "https://github.com/gkcalat",
"followers_url": "https://api.github.com/users/gkcalat/followers",
"following_url": "https://api.github.com/users/gkcalat/following{/other_user}",
"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
"starred_url": "https://api.github.com/users/gkcalat/starred{/owner}{/repo}",
"subscriptions_url": "https://api.github.com/users/gkcalat/subscriptions",
"organizations_url": "https://api.github.com/users/gkcalat/orgs",
"repos_url": "https://api.github.com/users/gkcalat/repos",
"events_url": "https://api.github.com/users/gkcalat/events{/privacy}",
"received_events_url": "https://api.github.com/users/gkcalat/received_events",
"type": "User",
"site_admin": false
}
] | null | [
"This has been fixed by #8850 and #8926. Reopen it if you encounter the same issue.\r\n\r\n/CC @chensun "
] | "2023-02-15T03:30:46" | "2023-03-10T00:27:49" | "2023-03-10T00:27:49" | MEMBER | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
KFP Standalone from master
### Steps to reproduce
Logs:
```
api.ReportService/ReportWorkflowV1 handler starting
I0215 03:26:04.850861 7 error.go:270] InternalServerError: Failed to store resource references: Error 1062: Duplicate entry '2785d638-1136-4bd3-8fbe-6045636d147c-Run-Experiment' for key 'resource_references.PRIMARY'
InternalServerError: Failed to store resource references to table for run runoftutorialdatapassinginf6rz-91-408347388
github.com/kubeflow/pipelines/backend/src/common/util.NewInternalServerError
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:144
github.com/kubeflow/pipelines/backend/src/apiserver/storage.(*RunStore).CreateRun
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/storage/run_store.go:492
github.com/kubeflow/pipelines/backend/src/apiserver/resource.(*ResourceManager).ReportWorkflowResource
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/resource/resource_manager.go:1346
github.com/kubeflow/pipelines/backend/src/apiserver/server.(*ReportServer).ReportWorkflowV1
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/server/report_server.go:40
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler.func1
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:338
main.apiServerInterceptor
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/interceptor.go:30
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:340
google.golang.org/grpc.(*Server).processUnaryRPC
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1282
google.golang.org/grpc.(*Server).handleStream
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1616
google.golang.org/grpc.(*Server).serveStreams.func1.2
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:921
runtime.goexit
/usr/local/go/src/runtime/asm_amd64.s:1581
Failed to report a workflow due to error creating run 2785d638-1136-4bd3-8fbe-6045636d147c
github.com/kubeflow/pipelines/backend/src/common/util.(*UserError).wrapf
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:258
github.com/kubeflow/pipelines/backend/src/common/util.Wrapf
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:329
github.com/kubeflow/pipelines/backend/src/apiserver/resource.(*ResourceManager).ReportWorkflowResource
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/resource/resource_manager.go:1348
github.com/kubeflow/pipelines/backend/src/apiserver/server.(*ReportServer).ReportWorkflowV1
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/server/report_server.go:40
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler.func1
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:338
main.apiServerInterceptor
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/interceptor.go:30
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:340
google.golang.org/grpc.(*Server).processUnaryRPC
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1282
google.golang.org/grpc.(*Server).handleStream
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1616
google.golang.org/grpc.(*Server).serveStreams.func1.2
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:921
runtime.goexit
/usr/local/go/src/runtime/asm_amd64.s:1581
Report workflow failed
github.com/kubeflow/pipelines/backend/src/common/util.(*UserError).wrap
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:263
github.com/kubeflow/pipelines/backend/src/common/util.Wrap
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:342
github.com/kubeflow/pipelines/backend/src/apiserver/server.(*ReportServer).ReportWorkflowV1
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/server/report_server.go:42
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler.func1
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:338
main.apiServerInterceptor
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/interceptor.go:30
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:340
google.golang.org/grpc.(*Server).processUnaryRPC
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1282
google.golang.org/grpc.(*Server).handleStream
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1616
google.golang.org/grpc.(*Server).serveStreams.func1.2
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:921
runtime.goexit
/usr/local/go/src/runtime/asm_amd64.s:1581
/api.ReportService/ReportWorkflowV1 call failed
github.com/kubeflow/pipelines/backend/src/common/util.(*UserError).wrapf
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:258
github.com/kubeflow/pipelines/backend/src/common/util.Wrapf
/go/src/github.com/kubeflow/pipelines/backend/src/common/util/error.go:329
main.apiServerInterceptor
/go/src/github.com/kubeflow/pipelines/backend/src/apiserver/interceptor.go:32
github.com/kubeflow/pipelines/backend/api/v1beta1/go_client._ReportService_ReportWorkflowV1_Handler
/go/src/github.com/kubeflow/pipelines/backend/api/v1beta1/go_client/report.pb.go:340
google.golang.org/grpc.(*Server).processUnaryRPC
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1282
google.golang.org/grpc.(*Server).handleStream
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:1616
google.golang.org/grpc.(*Server).serveStreams.func1.2
/go/pkg/mod/google.golang.org/grpc@v1.44.0/server.go:921
runtime.goexit
/usr/local/go/src/runtime/asm_amd64.s:1581
```
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8852 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8852/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8852/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8852/events | https://github.com/kubeflow/pipelines/issues/8852 | 1,585,136,196 | I_kwDOB-71UM5ee0JE | 8,852 | chore(backend): Upgrade gorm to v2 | {
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"Closed and see more info at #9859"
] | "2023-02-15T03:06:56" | "2023-08-28T20:57:30" | "2023-08-28T20:57:29" | MEMBER | null | Problem:
1. Backend's `storage` relies on `gorm` v1 package
2. `gorm` v1 is not actively developed and it will be difficult if we need to make more complex SQL queries
3. Lack of support of multiple database drivers
4. Bags and issues that will not be resolved in `gorm` v1
Solution:
1. Migrate to `gorm` v2 because it has:
- better support of multiple database drivers and dialects (including MySQL and PostgreSQL)
- simpler `gorm`-based SQL syntax
- built-in serializers
- smarter auto-migration
- support of `ROW_NUMBER` and other advances SQL
- support of `Upsert`
- performance improvements
- [other improvements](https://gorm.io/docs/v2_release_note.html)
---
<!-- Don't delete message below to encourage users to support your feature request! -->
Love this idea? Give it a ๐. | {
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] | null | [] | "2023-02-15T02:42:34" | "2023-04-27T20:21:03" | "2023-04-27T20:21:03" | MEMBER | null | ### Feature Area
Problem:
- Backend testing uses SQLite as a fake DB instance
- Real DB is based on MySQL
- Two databases have slight differences, which makes the testing useless
Solution:
- Switch the fake DB to MySQL instances
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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https://api.github.com/repos/kubeflow/pipelines/issues/8846 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8846/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8846/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8846/events | https://github.com/kubeflow/pipelines/issues/8846 | 1,582,925,084 | I_kwDOB-71UM5eWYUc | 8,846 | [backend] error: unknown field "isOptional" in ml_pipelines.ComponentInputsSpec.ParameterSpec | {
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"fixed by #8860 "
] | "2023-02-13T19:22:46" | "2023-02-24T20:35:12" | "2023-02-24T20:35:12" | COLLABORATOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
standalone
* KFP version:
2.0.0-beta.0
* KFP SDK version:
N/A
### Steps to reproduce
Run https://github.com/kubeflow/pipelines/blob/master/sdk/python/test_data/pipelines/pipeline_with_condition.py
or find its run result in sdk execution test, e.g.: https://oss.gprow.dev/view/gs/oss-prow/pr-logs/pull/kubeflow_pipelines/8841/kubeflow-pipelines-sdk-execution-tests/1625208635669876736
Pipeline failed with error:
```
F0213 19:04:16.807068 19 main.go:74] KFP driver: failed to unmarshal component spec, error: unknown field "isOptional" in ml_pipelines.ComponentInputsSpec.ParameterSpec
componentSpec: 0xc00067b7e0
```
### Expected result
no error, pipeline succeed.
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"gists_url": "https://api.github.com/users/gkcalat/gists{/gist_id}",
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] | null | [] | "2023-02-13T19:17:31" | "2023-02-16T21:22:42" | "2023-02-16T21:22:42" | COLLABORATOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
standalone
* KFP version:
2.0.0-beta.0
* KFP SDK version:
N/A
### Steps to reproduce
Run pipeline: https://github.com/kubeflow/pipelines/blob/master/samples/v2/pipeline_container_no_input.py
or find it run result from sdk-execution-test, e.g.: https://oss.gprow.dev/view/gs/oss-prow/pr-logs/pull/kubeflow_pipelines/8841/kubeflow-pipelines-sdk-execution-tests/1625208635669876736
Pipeline fails with pod error log:
```
I0213 19:00:39.519690 17 main.go:213] output ExecutorInput:{
"inputs": {},
"outputs": {
"outputFile": "/tmp/kfp_outputs/output_metadata.json"
}
}
F0213 19:00:39.519796 17 main.go:74] KFP driver: driver.Container(pipelineName=v2-container-component-no-input, runID=7cf802c0-d725-4eb2-b18d-ff22f8d4b112, task="hello-world-container", component="comp-hello-world-container", dagExecutionID=133285, componentSpec) failed: failure while getting executionCache: failed to list tasks: rpc error: code = Internal desc = List tasks failed: Failed to list tasks: InternalServerError: Failed to list tasks: sql: Scan error on column index 6, name "StartedTimestamp": converting NULL to int64 is unsupported: sql: Scan error on column index 6, name "StartedTimestamp": converting NULL to int64 is unsupported
```
### Expected result
No error, pipeline should succeed.
### Materials and Reference
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
"url": "https://api.github.com/repos/kubeflow/pipelines/issues/8845/reactions",
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"Hi @ReggieCarey!\r\n\r\nCould you please check if you can retrieve logs from the `mysql` pod?",
"The same issue, mysql pod logs\r\n```\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:17.569Z] \"- - -\" 0 - - - \"-\" 10362 21332 29 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:58857 10.128.48.144:3306 10.128.47.216:47612 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:17.813Z] \"- - -\" 0 - - - \"-\" 15446 357776 36 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:35527 10.128.48.144:3306 10.128.47.216:47628 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.161Z] \"- - -\" 0 - - - \"-\" 8378 17469 33 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:48867 10.128.48.144:3306 10.128.47.216:47672 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.160Z] \"- - -\" 0 - - - \"-\" 8378 17469 34 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:43887 10.128.48.144:3306 10.128.47.216:47638 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.162Z] \"- - -\" 0 - - - \"-\" 8378 17470 33 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:54319 10.128.48.144:3306 10.128.47.216:47680 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.160Z] \"- - -\" 0 - - - \"-\" 8378 17469 35 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:60221 10.128.48.144:3306 10.128.47.216:47658 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.160Z] \"- - -\" 0 - - - \"-\" 8378 17469 36 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:57623 10.128.48.144:3306 10.128.47.216:47644 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.690Z] \"- - -\" 0 - - - \"-\" 864 773 12 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:55705 10.128.48.144:3306 10.128.47.216:49048 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.688Z] \"- - -\" 0 - - - \"-\" 864 773 21 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:51761 10.128.48.144:3306 10.128.47.216:49032 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.695Z] \"- - -\" 0 - - - \"-\" 864 773 14 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:42689 10.128.48.144:3306 10.128.47.216:49092 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.695Z] \"- - -\" 0 - - - \"-\" 864 773 19 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:39661 10.128.48.144:3306 10.128.47.216:49084 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.694Z] \"- - -\" 0 - - - \"-\" 864 773 20 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:56179 10.128.48.144:3306 10.128.47.216:49062 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.704Z] \"- - -\" 0 - - - \"-\" 864 773 18 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:35125 10.128.48.144:3306 10.128.47.216:49118 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.704Z] \"- - -\" 0 - - - \"-\" 864 773 19 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:54089 10.128.48.144:3306 10.128.47.216:49108 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.704Z] \"- - -\" 0 - - - \"-\" 864 773 21 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:45305 10.128.48.144:3306 10.128.47.216:49146 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.705Z] \"- - -\" 0 - - - \"-\" 864 773 20 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:36357 10.128.48.144:3306 10.128.47.216:49154 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:19.704Z] \"- - -\" 0 - - - \"-\" 864 773 21 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:60551 10.128.48.144:3306 10.128.47.216:49134 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\n....\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:20.953Z] \"- - -\" 0 - - - \"-\" 8382 17477 505 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:51587 10.128.48.144:3306 10.128.47.216:41668 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:20.870Z] \"- - -\" 0 - - - \"-\" 8382 17474 589 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:54417 10.128.48.144:3306 10.128.47.216:41438 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:20.896Z] \"- - -\" 0 - - - \"-\" 8382 17477 564 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:44675 10.128.48.144:3306 10.128.47.216:41454 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:20.936Z] \"- - -\" 0 - - - \"-\" 8392 17582 524 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:41235 10.128.48.144:3306 10.128.47.216:41594 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:21.027Z] \"- - -\" 0 - - - \"-\" 8382 17477 434 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:35769 10.128.48.144:3306 10.128.47.216:41950 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:21.048Z] \"- - -\" 0 - - - \"-\" 8382 17477 414 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:49419 10.128.48.144:3306 10.128.47.216:42024 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:21.067Z] \"- - -\" 0 - - - \"-\" 8382 17477 395 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:39513 10.128.48.144:3306 10.128.47.216:42086 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\nmysql-55778745b6-lcl8q istio-proxy [2023-02-24T07:15:21.097Z] \"- - -\" 0 - - - \"-\" 8382 17477 368 - \"-\" \"-\" \"-\" \"-\" \"10.128.48.144:3306\" inbound|3306|| 127.0.0.6:40717 10.128.48.144:3306 10.128.47.216:42164 outbound_.3306_._.mysql.kubeflow.svc.cluster.local -\r\n```\r\n\r\nmysql container does't display logs\r\n\r\nAlso tried restarting `metadata-grpc-deployment`.\r\n\r\nIn mysql I was able to get a list of tables. \r\n```\r\nโฏ kubectl -it exec mysql-55778745b6-lcl8q -- mysql -D metadb -u root \r\n\r\nType 'help;' or '\\h' for help. Type '\\c' to clear the current input statement.\r\n\r\nmysql> show tables;\r\n+-------------------+\r\n| Tables_in_metadb |\r\n+-------------------+\r\n| Artifact |\r\n| ArtifactProperty |\r\n| Association |\r\n| Attribution |\r\n| Context |\r\n| ContextProperty |\r\n| Event |\r\n| EventPath |\r\n| Execution |\r\n| ExecutionProperty |\r\n| MLMDEnv |\r\n| ParentContext |\r\n| ParentType |\r\n| Type |\r\n| TypeProperty |\r\n+-------------------+\r\n15 rows in set (0.00 sec)\r\n```\r\n\r\nIt's like there is no problem here. \r\n\r\nThe problem seems to be the same as in [#6579](https://github.com/kubeflow/kubeflow/issues/6579) issue\r\n\r\n\r\nUPD: I tried changing mysql `max_connections` to 500 from default 151 and it actually worked. ",
"Here is my mysql log\r\n```\r\n2023-03-08 15:43:23+00:00 [Note] [Entrypoint]: Entrypoint script for MySQL Server 5.7.38-1debian10 started.\r\n2023-03-08 15:43:23+00:00 [Note] [Entrypoint]: Switching to dedicated user 'mysql'\r\n2023-03-08 15:43:23+00:00 [Note] [Entrypoint]: Entrypoint script for MySQL Server 5.7.38-1debian10 started.\r\n2023-03-08T15:43:23.923581Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).\r\n2023-03-08T15:43:23.924540Z 0 [Note] mysqld (mysqld 5.7.38) starting as process 1 ...\r\n2023-03-08T15:43:23.926535Z 0 [Note] InnoDB: PUNCH HOLE support available\r\n2023-03-08T15:43:23.926547Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins\r\n2023-03-08T15:43:23.926550Z 0 [Note] InnoDB: Uses event mutexes\r\n2023-03-08T15:43:23.926552Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier\r\n2023-03-08T15:43:23.926554Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11\r\n2023-03-08T15:43:23.926556Z 0 [Note] InnoDB: Using Linux native AIO\r\n2023-03-08T15:43:23.926708Z 0 [Note] InnoDB: Number of pools: 1\r\n2023-03-08T15:43:23.926784Z 0 [Note] InnoDB: Using CPU crc32 instructions\r\n2023-03-08T15:43:23.927965Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M\r\n2023-03-08T15:43:23.933643Z 0 [Note] InnoDB: Completed initialization of buffer pool\r\n2023-03-08T15:43:23.935098Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().\r\n2023-03-08T15:43:24.237371Z 0 [Note] InnoDB: Highest supported file format is Barracuda.\r\n2023-03-08T15:43:25.502228Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables\r\n2023-03-08T15:43:25.502284Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...\r\n2023-03-08T15:43:27.549138Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.\r\n2023-03-08T15:43:27.550178Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.\r\n2023-03-08T15:43:27.550190Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.\r\n2023-03-08T15:43:27.550786Z 0 [Note] InnoDB: 5.7.38 started; log sequence number 83960348\r\n2023-03-08T15:43:27.550999Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool\r\n2023-03-08T15:43:27.551183Z 0 [Note] Plugin 'FEDERATED' is disabled.\r\n2023-03-08T15:43:28.212446Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.\r\n2023-03-08T15:43:28.212476Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.\r\n2023-03-08T15:43:28.212482Z 0 [Warning] A deprecated TLS version TLSv1 is enabled. Please use TLSv1.2 or higher.\r\n2023-03-08T15:43:28.212486Z 0 [Warning] A deprecated TLS version TLSv1.1 is enabled. Please use TLSv1.2 or higher.\r\n2023-03-08T15:43:28.296561Z 0 [Warning] CA certificate ca.pem is self signed.\r\n2023-03-08T15:43:28.296641Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.\r\n2023-03-08T15:43:28.314437Z 0 [Note] Server hostname (bind-address): '*'; port: 3306\r\n2023-03-08T15:43:28.314669Z 0 [Note] IPv6 is available.\r\n2023-03-08T15:43:28.314692Z 0 [Note] - '::' resolves to '::';\r\n2023-03-08T15:43:28.314725Z 0 [Note] Server socket created on IP: '::'.\r\n2023-03-08T15:43:28.316528Z 0 [Warning] Insecure configuration for --pid-file: Location '/var/run/mysqld' in the path is accessible to all OS users. Consider choosing a different directory.\r\n2023-03-08T15:43:28.934090Z 0 [Note] InnoDB: Buffer pool(s) load completed at 230308 15:43:28\r\n2023-03-08T15:43:30.118955Z 0 [Note] Event Scheduler: Loaded 0 events\r\n2023-03-08T15:43:30.119247Z 0 [Note] mysqld: ready for connections.\r\nVersion: '5.7.38' socket: '/var/run/mysqld/mysqld.sock' port: 3306 MySQL Community Server (GPL)\r\n```\r\nHere's the logs from metadata-grpc-deployment:\r\n```\r\nWARNING: Logging before InitGoogleLogging() is written to STDERR\r\nI0308 15:44:01.511389 1 metadata_store_server_main.cc:258] Server listening on 0.0.0.0:8080\r\nW0308 15:45:10.351994 177 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.352021 118 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.352051 185 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.352072 111 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.352154 149 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.352870 188 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.353062 105 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.353082 158 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.361578 99 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.362709 164 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.363934 117 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\nW0308 15:45:10.364862 113 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error: \r\n```\r\nThis is after restarting both deployments and then asking for artifacts in the UI",
"So apparently the following block of code is where the error is reported in ml-metadata from google: https://github.com/google/ml-metadata/blob/418ecea406e540fd10b558197b7fe2fefd2e1033/ml_metadata/metadata_store/metadata_store_service_impl.cc\r\n\r\n```\r\n::grpc::Status MetadataStoreServiceImpl::GetEventsByArtifactIDs(\r\n ::grpc::ServerContext* context,\r\n const GetEventsByArtifactIDsRequest* request,\r\n GetEventsByArtifactIDsResponse* response) {\r\n std::unique_ptr<MetadataStore> metadata_store;\r\n const ::grpc::Status connection_status =\r\n ConnectMetadataStore(connection_config_, &metadata_store);\r\n if (!connection_status.ok()) {\r\n LOG(WARNING) << \"Failed to connect to the database: \"\r\n << connection_status.error_message();\r\n return connection_status;\r\n }\r\n const ::grpc::Status transaction_status =\r\n ToGRPCStatus(metadata_store->GetEventsByArtifactIDs(*request, response));\r\n if (!transaction_status.ok()) {\r\n LOG(WARNING) << \"GetEventsByArtifactIDs failed: \"\r\n << transaction_status.error_message();\r\n }\r\n return transaction_status;\r\n}\r\n```\r\n\r\nThis references ConnectMetadataStore function:\r\n```\r\n// Converts from absl Status to GRPC Status.\r\n::grpc::Status ToGRPCStatus(const ::absl::Status& status) {\r\n // Note: the absl and grpc status codes align with each other.\r\n return ::grpc::Status(static_cast<::grpc::StatusCode>(status.code()),\r\n std::string(status.message()));\r\n}\r\n\r\n// Creates a store on demand. The store created does not handle migration.\r\n::grpc::Status ConnectMetadataStore(\r\n const ConnectionConfig& connection_config,\r\n std::unique_ptr<MetadataStore>* metadata_store) {\r\n return ToGRPCStatus(CreateMetadataStore(connection_config, metadata_store));\r\n}\r\n```\r\n\r\nThis leads to the code:\r\n```\r\nabsl::Status CreateMetadataStore(const ConnectionConfig& config,\r\n const MigrationOptions& options,\r\n std::unique_ptr<MetadataStore>* result) {\r\n switch (config.config_case()) {\r\n case ConnectionConfig::CONFIG_NOT_SET:\r\n // TODO(b/123345695): make this longer when that bug is resolved.\r\n // Must specify a metadata store type.\r\n return absl::InvalidArgumentError(\"Unset\");\r\n case ConnectionConfig::kFakeDatabase:\r\n // Creates an in-memory SQLite database for testing.\r\n return CreateSqliteMetadataStore(SqliteMetadataSourceConfig(), options,\r\n result);\r\n case ConnectionConfig::kMysql:\r\n return CreateMySQLMetadataStore(config.mysql(), options, result);\r\n case ConnectionConfig::kSqlite:\r\n return CreateSqliteMetadataStore(config.sqlite(), options, result);\r\n default:\r\n return absl::UnimplementedError(\"Unknown database type.\");\r\n }\r\n}\r\n\r\nabsl::Status CreateMetadataStore(const ConnectionConfig& config,\r\n std::unique_ptr<MetadataStore>* result) {\r\n return CreateMetadataStore(config, {}, result);\r\n}\r\n```\r\n\r\nAnd the CreateMySQLMetadataStore() function\r\n```\r\n#ifndef _WIN32\r\nabsl::Status CreateMySQLMetadataStore(const MySQLDatabaseConfig& config,\r\n const MigrationOptions& migration_options,\r\n std::unique_ptr<MetadataStore>* result) {\r\n auto metadata_source = std::make_unique<MySqlMetadataSource>(config);\r\n auto transaction_executor =\r\n std::make_unique<RdbmsTransactionExecutor>(metadata_source.get());\r\n MLMD_RETURN_IF_ERROR(MetadataStore::Create(\r\n util::GetMySqlMetadataSourceQueryConfig(), migration_options,\r\n std::move(metadata_source), std::move(transaction_executor), result));\r\n return (*result)->InitMetadataStoreIfNotExists(\r\n migration_options.enable_upgrade_migration());\r\n}\r\n#else\r\nabsl::Status CreateMySQLMetadataStore(\r\n const MySQLDatabaseConfig& config,\r\n const MigrationOptions& migration_options,\r\n std::unique_ptr<MetadataStore>* result) {\r\n return absl::UnimplementedError(\r\n \"MySQL is not supported in Windows yet\");\r\n}\r\n#endif\r\n```\r\n\r\nSo, is the problem in the call to std::make_unique(), or MLMD_RETURN_IF_ERROR(MetadataStore::Create()) or in the reutrn (*result)->InitMetadataStoreIfNotExists(). \r\n\r\nIt appears that since the database already exists, the likely culprit is produced from this snippet of code:\r\n```\r\nMLMD_RETURN_IF_ERROR(MetadataStore::Create(\r\n util::GetMySqlMetadataSourceQueryConfig(), migration_options,\r\n std::move(metadata_source), std::move(transaction_executor), result));\r\n```\r\n\r\nThis feels like a rabbit hole. \r\n\r\nThe one thing I do notice is that in the Kubeflow out of the box configuration (kf 1.6.0 deployed via manifests) is the lack of password associated with the root user for MySQL (EnvVar: DBCONFIG_PASSWORD is blank)\r\n\r\nThe command to launch this metadata_grpc_deployment is apparently:\r\n\r\n```\r\n/bin/metadata_store_server --grpc_port=8080 --mysql_config_database=$(MYSQL_DATABASE) --mysql_config_host=$(MYSQL_HOST) --mysql_config_port=$(MYSQL_PORT) --mysql_config_user=$(DBCONFIG_USER) --mysql_config_password=$(DBCONFIG_PASSWORD) --enable_database_upgrade=true\r\n```\r\n\r\nA view of the isto-proxy for the metadata-grpc-deployment shows that when a request is made in the UI to request the artifacts, many many many connections to MySQL are reported all within 1-2 seconds.\r\n\r\n```\r\n2023-03-08T19:28:20.328466Z\tinfo\tReadiness succeeded in 1.669092606s\r\n2023-03-08T19:28:20.329170Z\tinfo\tEnvoy proxy is ready\r\n[2023-03-08T19:29:47.239Z] \"POST /ml_metadata.MetadataStoreService/GetArtifactTypes HTTP/2\" 200 - via_upstream - \"-\" 5 151 43 42 \"100.64.0.2\" \"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/110.0.0.0 Safari/537.36\" \"f7c9bf1b-81fc-97a2-b5ab-6df0b7a168a2\" \"kf.example.com\" \"172.25.90.90:8080\" inbound|8080|| 127.0.0.6:34643 172.25.90.90:8080 100.64.0.2:0 - default\r\n[2023-03-08T19:29:47.244Z] \"- - -\" 0 - - - \"-\" 11214 24350 39 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:38642 172.25.58.141:3306 172.25.90.90:39440 - -\r\n[2023-03-08T19:29:47.456Z] \"- - -\" 0 - - - \"-\" 9702 129705 32 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:38658 172.25.58.141:3306 172.25.90.90:39450 - -\r\n[2023-03-08T19:29:47.439Z] \"POST /ml_metadata.MetadataStoreService/GetArtifacts HTTP/2\" 200 - via_upstream - \"-\" 5 102319 49 48 \"100.64.0.2\" \"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/110.0.0.0 Safari/537.36\" \"a55d4e72-669a-950a-b7de-17e5d6681129\" \"kf.example.com\" \"172.25.90.90:8080\" inbound|8080|| 127.0.0.6:34643 172.25.90.90:8080 100.64.0.2:0 - default\r\n[2023-03-08T19:29:47.658Z] \"POST /ml_metadata.MetadataStoreService/GetEventsByArtifactIDs HTTP/2\" 200 - via_upstream - \"-\" 7 62 25 25 \"100.64.0.2\" \"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/110.0.0.0 Safari/537.36\" \"8a9c1bdf-9d17-9e0b-bc51-5ef1891fbe1a\" \"kf.example.com\" \"172.25.90.90:8080\" inbound|8080|| 127.0.0.6:34643 172.25.90.90:8080 100.64.0.2:0 - default\r\n[2023-03-08T19:29:47.662Z] \"- - -\" 0 - - - \"-\" 7517 16947 22 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:38662 172.25.58.141:3306 172.25.90.90:39458 - -\r\n[2023-03-08T19:29:47.961Z] \"- - -\" 0 - - - \"-\" 0 27 46 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40150 172.25.58.141:3306 172.25.90.90:41036 - -\r\n[2023-03-08T19:29:47.961Z] \"- - -\" 0 - - - \"-\" 0 27 46 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40184 172.25.58.141:3306 172.25.90.90:41060 - -\r\n[2023-03-08T19:29:47.961Z] \"- - -\" 0 - - - \"-\" 0 27 46 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40196 172.25.58.141:3306 172.25.90.90:41076 - -\r\n[2023-03-08T19:29:47.962Z] \"- - -\" 0 - - - \"-\" 0 27 46 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40272 172.25.58.141:3306 172.25.90.90:41158 - -\r\n[2023-03-08T19:29:47.962Z] \"- - -\" 0 - - - \"-\" 0 27 46 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40280 172.25.58.141:3306 172.25.90.90:41174 - -\r\n[2023-03-08T19:29:47.962Z] \"- - -\" 0 - - - \"-\" 0 27 47 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40264 172.25.58.141:3306 172.25.90.90:41078 - -\r\n[2023-03-08T19:29:47.962Z] \"- - -\" 0 - - - \"-\" 0 27 47 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40238 172.25.58.141:3306 172.25.90.90:41124 - -\r\n[2023-03-08T19:29:47.962Z] \"- - -\" 0 - - - \"-\" 0 27 47 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40248 172.25.58.141:3306 172.25.90.90:41134 - -\r\n[2023-03-08T19:29:47.967Z] \"- - -\" 0 - - - \"-\" 0 27 43 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40298 172.25.58.141:3306 172.25.90.90:41190 - -\r\n[2023-03-08T19:29:47.967Z] \"- - -\" 0 - - - \"-\" 0 27 42 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40352 172.25.58.141:3306 172.25.90.90:41208 - -\r\n[2023-03-08T19:29:47.967Z] \"- - -\" 0 - - - \"-\" 0 27 43 - \"-\" \"-\" \"-\" \"-\" \"172.25.88.107:3306\" outbound|3306||mysql.kubeflow.svc.cluster.local 172.25.90.90:40312 172.25.58.141:3306 172.25.90.90:41198 - -\r\n...\r\n```\r\n\r\nFor a single Click on the Artifacts tab in the Kubeflow Dashboard, I have recorded around 457 connection requests to the mysql database in a span of time from: 2023-03-08T19:29:47.244Z to 2023-03-08T19:29:51.640Z a period of about 4 seconds.\r\n\r\nTHIS IS CLEARLY A BUG. Question is: Is this a bug of configuration (hope so) or a general defect in the code.\r\n\r\nCan someone with more familiarity with the code do some problem analysis?\r\n",
"@jlyaoyuli it looks like this has been resolved by https://github.com/kubeflow/pipelines/pull/9370 (planned for inclusion in the final `2.0.0`, and already included in `2.0.0-rc.1`), do you agree?",
"@thesuperzapper Thanks for checking! Yes, this issue should be resolved in our latest version!"
] | "2023-02-13T19:05:03" | "2023-06-01T21:34:21" | "2023-06-01T20:43:01" | NONE | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
Deployed as part of Kubeflow 1.6.0 using all-in-one manifests.
* KFP version:
2.0.0.alpha.3
### Steps to reproduce
Login to Kubeflow
Get the dashboard visible
Click on "Artifacts" in left hand pane.
### Expected result
A list of my artifacts should appear, not an error at the top of the page.
### Materials and Reference
Found that metadata-grpc-deployment reports the error in its log:
For each press of the "Artifacts" button, the following logs are generated in metadata-grpc-deployment-<uuid>
```
W0213 18:50:37.803512 508 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.807418 519 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.808578 520 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.808811 517 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.808934 518 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.809177 512 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.809348 502 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.809360 494 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.809484 516 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811550 506 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811604 493 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811686 497 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811736 500 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811801 498 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.811853 499 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.812080 510 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.812157 513 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
W0213 18:50:37.812229 515 metadata_store_service_impl.cc:432] Failed to connect to the database: mysql_real_connect failed: errno: , error:
```
---
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"received_events_url": "https://api.github.com/users/connor-mccarthy/received_events",
"type": "User",
"site_admin": false
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] | null | [
"Hi @ReggieCarey!\r\nThank you for reporting it. This component is not actively developed. If you wish, please create a PR adding the support for non-GCP distributions of kubernetes.",
"Thanks for the feedback! Great community. What was diagnose me supposed to do? I'll try to find the code and answer that myself. If it's not actively maintained, should it be removed for marked in some way?",
"Thanks, @ReggieCarey. `diagnose_me` was created to programmatically capture a variety of information about a K8s deployment on GCP to help expedite debugging.\r\n\r\nThis tool is best thought of as a helper script for a particular form of deployment. Kubeflow Pipelines has no dependency on GCP.\r\n\r\nSince your inquiry we've been discussing how to handle the `diagnose_me` command for KFP v2.\r\nNo update yet, but you raise good considerations that we're taking into account.",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-13T14:38:51" | "2023-08-26T07:42:27" | null | NONE | null | ### Environment
* KFP version:
KFP as installed by Kubeflow Manifests 1.6.0 onto private k8s.
* KFP SDK version:
Local install (MacOS) as installed via pip install kfp (as of Feb 13, 2023)
* All dependencies version:
kfp 1.8.18
kfp-pipeline-spec 0.1.16
kfp-server-api 1.8.5
### Steps to reproduce
Attempt to execute 'kfp diagnose me' on MacOS.
```
$ pip install kfp --upgrade
$ kfp diagnose_me
Google Cloud SDK is not installed, gcloud, gsutil and kubectl are required for this app to run. Please follow instructions at https://cloud.google.com/sdk/install to install the SDK.
```
### Expected result
I expected that an open source tool would not have a dependency on a commercial implementation of Kubernetes or be tied to Kubeflow Pipelines deployed to Googles infrastructure.
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8842 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8842/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8842/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8842/events | https://github.com/kubeflow/pipelines/issues/8842 | 1,582,146,066 | I_kwDOB-71UM5eTaIS | 8,842 | This step is in Error state with this message: unexpected end of JSON input | {
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"Hi @AaronUST!\r\nCould you please check if you have specified a correct input for the component?",
"@AaronUST @gkcalat I found the cause of this issue, please see https://github.com/kubeflow/pipelines/issues/8942 for more information.\r\n\r\nI imagine you will be able to fix this by removing `WorkflowTaskResults` RBAC access from your task executor ServiceAccount (which will often be `default-editor` in the profile namespaces).\r\n\r\nHowever, I am not sure if argo-workflows 3.4 supports the old Pod-annotation arpproach, so you may also have to downgrade to argo-workflows 3.3.\r\n\r\nAlso, you might need to try and clear out the broken cache content if you want to try and run these tasks again.",
"Thank you, @thesuperzapper!\r\n\r\nClosing this to dedupe the issues."
] | "2023-02-13T11:09:52" | "2023-04-11T16:19:43" | "2023-04-11T16:19:43" | NONE | null | ### Environment
* KFP has been installed on a Google Cloud kubernetes cluster
* KFP version: 1.8.5
### Steps to reproduce
The error appears in the runs console when trying to perform a run. The first time I ran the same pipeline it worked fine, but the second and subsequent times I get this error.
![image](https://user-images.githubusercontent.com/39186934/218442325-5c00cc48-8dd8-4033-9de1-b0b33c787f5b.png)
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https://api.github.com/repos/kubeflow/pipelines/issues/8840 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8840/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8840/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8840/events | https://github.com/kubeflow/pipelines/issues/8840 | 1,580,530,196 | I_kwDOB-71UM5eNPoU | 8,840 | [backend] InternalServerError: Failed to convert a pipeline to API pipeline: Pipeline namespace cannot be empty | {
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] | null | [] | "2023-02-11T00:29:23" | "2023-02-16T07:31:11" | "2023-02-16T07:31:11" | COLLABORATOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
standalone
* KFP version:
2.0.0b0
* KFP SDK version:
dev
### Steps to reproduce
Calling [list_pipelines](https://github.com/kubeflow/pipelines/blob/a45d72d75dd99c9cbb8dc4706d380e4ceb9ec47e/sdk/python/kfp/client/client.py#L689-L722) API with or without passing namespace returns a list of pipeline that contains error message.
```
{'next_page_token': None,
'pipelines': [{'created_at': None,
'description': None,
'display_name': None,
'error': {'code': 13,
'details': [{'type_url': None, 'value': None}],
'message': 'InternalServerError: Failed to convert a '
'pipeline to API pipeline: Pipeline '
'namespace cannot be empty'},
'namespace': None,
'pipeline_id': '425faaa8-1dfb-4b8b-85f4-3c2cd5a83b75'},
{'created_at': None,
'description': None,
'display_name': None,
'error': {'code': 13,
'details': [{'type_url': None, 'value': None}],
'message': 'InternalServerError: Failed to convert a '
'pipeline to API pipeline: Pipeline '
'namespace cannot be empty'},
'namespace': None,
'pipeline_id': 'b5a9bd6b-b981-44a4-b8da-e7a23c101f17'},
{'created_at': None,
'description': None,
'display_name': None,
'error': {'code': 13,
'details': [{'type_url': None, 'value': None}],
'message': 'InternalServerError: Failed to convert a '
'pipeline to API pipeline: Pipeline '
'namespace cannot be empty'},
'namespace': None,
'pipeline_id': '68de8376-d386-409d-8e81-cf3cfc1a6366'},
{'created_at': None,
'description': None,
'display_name': None,
'error': {'code': 13,
'details': [{'type_url': None, 'value': None}],
'message': 'InternalServerError: Failed to convert a '
'pipeline to API pipeline: Pipeline '
'namespace cannot be empty'},
'namespace': None,
'pipeline_id': '39aabd86-627a-4616-a8e0-b90c8862e57d'}],
'total_size': 4}
```
### Expected result
expect no error
### Materials and Reference
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8837 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8837/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8837/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8837/events | https://github.com/kubeflow/pipelines/issues/8837 | 1,578,696,616 | I_kwDOB-71UM5eGP-o | 8,837 | [frontend] Cannot GET /apis/v2beta1/healthz | {
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"avatar_url": "https://avatars.githubusercontent.com/u/2043310?v=4",
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"repos_url": "https://api.github.com/users/chensun/repos",
"events_url": "https://api.github.com/users/chensun/events{/privacy}",
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"site_admin": false
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] | null | [
"I was confused, the healthz response I saw was served by the frontend. So missing v2beta1/healthz is expected, as we haven't migrate frontend to connect to v2 APIs yet.\r\n\r\nhttps://github.com/kubeflow/pipelines/blob/508b6a133ab7a0d8abefe7ac95a4de824461e30b/frontend/server/app.ts#L109-L116",
"This is resolved as per @chensun's comment and our discussion."
] | "2023-02-09T22:19:09" | "2023-02-10T22:18:56" | "2023-02-10T22:18:56" | COLLABORATOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)? KFP standalone deployment
<!-- For more information, see an overview of KFP installation options: https://www.kubeflow.org/docs/pipelines/installation/overview/. -->
* KFP version: 2.0.0-beta.0
* KFP SDK version: N/A
### Steps to reproduce
Hit healthz endpoint, e.g.: https://\<kfp endpoint\>/apis/v2beta1/healthz
### Expected result
Expect to get the same result for `v1beta1/healthz`, whic is something like
```
{"buildDate":"Tue Feb 7 23:42:37 UTC 2023","frontendCommitHash":"438b16597d4fcad18b7562cea5760c2b8374d6ef","frontendTagName":"2.0.0-beta.0","apiServerReady":true,"apiServerCommitHash":"438b16597d4fcad18b7562cea5760c2b8374d6ef","apiServerTagName":"2.0.0-beta.0","apiServerMultiUser":false,"multi_user":false}
```
Instead, for `v2beta1/healthz`, I got
```
404: Cannot GET /apis/v2beta1/healthz
```
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8833 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8833/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8833/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8833/events | https://github.com/kubeflow/pipelines/issues/8833 | 1,578,456,021 | I_kwDOB-71UM5eFVPV | 8,833 | feature(backend): Update healthz service in KFP v2 | {
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-09T19:20:38" | "2023-08-26T07:42:29" | null | MEMBER | null | Current state:
KFP v2 inherited HealthzSerivce from KFP v1:
```
service HealthzService {
// Get healthz data.
rpc GetHealthz(google.protobuf.Empty) returns (GetHealthzResponse) {
option (google.api.http) = {
get: "/apis/v2beta1/healthz"
};
}
}
message GetHealthzResponse {
// TODO(gkcalat): redesign this service to return status
// and move server configuration into a separate service
// TODO(gkcalat): rename or deprecate v1beta1 HealthzService
//
// Returns if KFP in multi-user mode
bool multi_user = 3;
}
```
We need to:
1. Make the service consistent with its purpose and compliant with AIP
2. Move `multi_user` and other server configuration-related information to a separate service
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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https://api.github.com/repos/kubeflow/pipelines/issues/8832 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8832/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8832/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8832/events | https://github.com/kubeflow/pipelines/issues/8832 | 1,578,449,945 | I_kwDOB-71UM5eFTwZ | 8,832 | chore(backend): Migrate backend API reference docs from kuberflow.org | {
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] | null | [] | "2023-02-09T19:15:05" | "2023-08-15T17:03:57" | "2023-08-15T17:03:57" | MEMBER | null | Problem:
We have separate [v1](https://www.kubeflow.org/docs/components/pipelines/v1/reference/api/kubeflow-pipeline-api-spec/) and [v2](https://www.kubeflow.org/docs/components/pipelines/v2/reference/api/kubeflow-pipeline-api-spec/) API references on kubeflow.org. As kubeflow.org is versioned by full-fledged kubeflow releases, users can assume that the reference docs are pinned to Kubeflow version. Given that kubeflow.org is deployed from master branch, we can't store the latest API reference docs there before kubeflow makes a new release and include the latest KFP version.
Solution:
Host KFP API reference docs on an external website similar to [SDK reference docs](https://kubeflow-pipelines.readthedocs.io/).
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https://api.github.com/repos/kubeflow/pipelines/issues/8830 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8830/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8830/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8830/events | https://github.com/kubeflow/pipelines/issues/8830 | 1,577,582,214 | I_kwDOB-71UM5eB_6G | 8,830 | [backend] Argo workflow validation fails for kfp v2 pipeline with downstream tasks depending on tasks in `dsl.ParallelFor` (using `dsl.Collected`) | {
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"Not sure what was the reason adding a `-iterations` suffix to the loop task name [here](https://github.com/kubeflow/pipelines/blob/2.0.0-beta.0/backend/src/v2/compiler/argocompiler/dag.go#L297), but tested in my Kubeflow deployment, simply removing the suffix would make the compiled Argo workflow passing validation.",
"Tested with beta.2, still happening.",
"I've encountered the issue in 2.0.0-rc.2 as well"
] | "2023-02-09T09:59:36" | "2023-06-20T17:14:05" | null | NONE | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
Full Kubeflow deployment on GKE.
* KFP version:
2.0.0-beta.0
* KFP SDK version:
2.0.0-beta.11
### Steps to reproduce
```
# pipeline.py
from kfp import compiler, dsl
from components import components as test_components
@dsl.pipeline(
name='Churn model prediction pipeline',
description='Churn model prediction pipeline'
)
def bug_repro_pipeline(
loop_items: list = ['1', '2'],
) -> None:
with dsl.ParallelFor(
name='predict-loop',
items=loop_items,
parallelism=2,
) as item:
task_in_loop = test_components.op_in_loop(str_input_p1=item)
test_components.downstream_op(list_input_p1=dsl.Collected(task_in_loop.output))
if __name__ == '__main__':
compiler.Compiler().compile(bug_repro_pipeline, 'bug_repro_pipeline.yaml')
```
```
# components/components.py
from typing import List
from kfp import dsl
BASE_IMAGE = 'python:3.8'
TARGET_IMAGE = 'pipeline-bug-repro:v0.1'
@dsl.component(
base_image=BASE_IMAGE,
target_image=TARGET_IMAGE,
)
def op_in_loop(str_input_p1: str) -> str:
return str_input_p1
@dsl.component(
base_image=BASE_IMAGE,
target_image=TARGET_IMAGE,
)
def downstream_op(list_input_p1: List[str]) -> str:
return ' '.join(list_input_p1)
```
1. Compile the pipeline defined in `pipeline.py`.
2. Upload the compiled pipeline to KFP through the Kubeflow central dashboard.
3. Try to create a run of the uploaded pipeline through the Kubeflow central dashboard.
4. Got the following error message: `{"error":"Failed to create a new v1beta1 run: InternalServerError: Failed to validate workflow for (): templates.entrypoint.tasks.root templates.root sorting failed: invalid dependency for-loop-1","code":13,"message":"Failed to create a new v1beta1 run: InternalServerError: Failed to validate workflow for (): templates.entrypoint.tasks.root templates.root sorting failed: invalid dependency for-loop-1","details":[{"@type":"type.googleapis.com/google.rpc.Status","code":13,"message":"Internal Server Error"}]}`
### Expected result
Can start a run of the specified pipeline.
### Materials and Reference
---
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https://api.github.com/repos/kubeflow/pipelines/issues/8827 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8827/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8827/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8827/events | https://github.com/kubeflow/pipelines/issues/8827 | 1,576,902,141 | I_kwDOB-71UM5d_Z39 | 8,827 | [sdk] Imports from kfp.dsl cause error AttributeError: module 'kfp_server_api' has no attribute 'ApiPipelineSpec | {
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"I've got the same error",
"In my environment, upgrading kfp to 2.0.0b12 resolved this issue.",
"I will close this issue. Feel free to reopen the issue if there's any more problems.",
"> In my environment, upgrading kfp to 2.0.0b12 resolved this issue.\r\n\r\nI tried upgrading to 2.0.0b12, but I have CSV files as input output of the components in my code. So, it gives an error : \"typeerror: artifacts must have both a schema_title and a schema_version, separated by `@`. got: csv\" . Can you suggest something for this?"
] | "2023-02-08T22:46:08" | "2023-06-05T19:58:13" | "2023-02-09T23:40:42" | NONE | null | ### Environment
* KFP version:
kfp==2.0.0b1
* All dependencies version:
kfp-pipeline-spec==0.1.16
kfp-server-api==2.0.0b0
### Steps to reproduce
1. `from kfp import dsl`
2. Use any part of dsl, such as pipeline or component decorators
```
from kfp import dsl, compiler
@dsl.pipeline(
name="test"
)
def pipeline_fn(
location: str,
project_id: str,
):
print("hello world")
compiler.Compiler().compile(
pipeline_func=pipeline_fn,
package_path='hello_world_pipeline.yaml')
```
4. Attempt to build component
5. Error results:
`Traceback (most recent call last):
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/Users/viktorgarba/klover/attain-ai-ml/src/pipelines/bert_v1.py", line 1, in <module>
from kfp import dsl, compiler
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/site-packages/kfp/__init__.py", line 23, in <module>
from kfp.client import Client # pylint: disable=wrong-import-position
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/site-packages/kfp/client/__init__.py", line 15, in <module>
from kfp.client.client import Client
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/site-packages/kfp/client/client.py", line 56, in <module>
class JobConfig:
File "/Users/viktorgarba/miniconda/envs/ml-env/lib/python3.9/site-packages/kfp/client/client.py", line 59, in JobConfig
self, spec: kfp_server_api.ApiPipelineSpec,
AttributeError: module 'kfp_server_api' has no attribute 'ApiPipelineSpec'`
### Expected result
No error should occur. component yaml should be outout
### Materials and Reference
When downgrading `kfp-server-api` from `2.0.0b0` (which was deployed 4 hours ago) to `2.0.0a6` things work as expected
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https://api.github.com/repos/kubeflow/pipelines/issues/8826 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8826/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8826/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8826/events | https://github.com/kubeflow/pipelines/issues/8826 | 1,576,817,906 | I_kwDOB-71UM5d_FTy | 8,826 | [sdk] Types for kfp and kfp.dsl are not found by mypy | {
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"@JakeSummers, please see my comment here: https://github.com/kubeflow/pipelines/pull/7451#issuecomment-1423310652",
"The issue is lack of py.typed (+ setup.py to preserve py.typed in wheel). kfp uses types internally, but types are not exposed to users because of [pep 560](https://peps.python.org/pep-0560/). An empty place marker file of py.typed at root of package (kfp/ folder) + setup.py include_package_data is needed to resolve this.\r\n\r\nI can confirm using kfp 2.0.1 that this issue still applies and looking at master should be present even if new release was done now."
] | "2023-02-08T21:22:43" | "2023-07-28T08:16:49" | null | NONE | null | ### Environment
All dependencies version:
* kfp 1.8.12 and 1.8.18
* mypy 1.0.0
I am managing my dependencies with poetry.
### Steps to reproduce
```
import kfp.dsl as dsl
```
Run `mypy`
Produces error:
```
file.py:1: error: Skipping analyzing "kfp.dsl": module is installed, but missing library stubs or py.typed marker [import]
```
### Expected result
Type stubs are included in project.
### Materials and Reference
It looks like this issue was addressed in #7451 but it doesn't seem to work for me.
---
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https://api.github.com/repos/kubeflow/pipelines/issues/8825 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8825/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8825/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8825/events | https://github.com/kubeflow/pipelines/issues/8825 | 1,576,702,821 | I_kwDOB-71UM5d-pNl | 8,825 | [bug] Vertex AI and kfp v2 'ApiPipelineSpec' | {
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"I do not know if I should report this to the vertex-ai team, but I do not know how.",
"I think now with the last release of kfp `v2.0.12.0b` are now running fine."
] | "2023-02-08T19:42:10" | "2023-02-08T21:38:21" | "2023-02-08T21:38:21" | MEMBER | null | ### Environment
I am using Vertex AI from GCP
* How do you deploy Kubeflow Pipelines (KFP)?
Vertex
* KFP version:
Vertex
* KFP SDK version:
v2.0.12b and v2.0.11b
### Steps to reproduce
Any pipeline that was compiled to run with either of the last two versions are now failing as:
![image](https://user-images.githubusercontent.com/3343006/217634438-b088a9b6-6ef0-4441-9cb2-ef5f7f5c4274.png)
### Expected result
Kubeflow pipeline should finish sucessfully
### Labels
<!-- Please include labels below by uncommenting them to help us better triage issues -->
<!-- /area backend -->
<!-- /area sdk -->
---
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] | null | [] | "2023-02-07T16:17:32" | "2023-03-10T00:55:41" | "2023-02-07T21:57:42" | MEMBER | null | We need to update one of the release scripts due to the changes in API generator script:
- Add `API_VERSION` variable
- Add proto compilation for v1 and v2
---
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"I came across the same issue when tried to convert an existing v1 pipeline implementation to v2, which had a downstream task depending on upstream tasks in a `ParallelFor` group. Then I came across this new [commit](https://github.com/kubeflow/pipelines/pull/8631) in kfp pre-release `2.0.0b12`. At least using `dsl.Collected` the compiler was able to build the DAG as expected. But would like to confirm if that was the intended way to achieve this dependency pattern in v2, if so, what was the logics behind it?",
"@kakaxilyp \r\nthanks for sharing this. In the previous release `dsl.Collected` was not yet available.\r\nhow do I get around the problem that my parallel for might not have an output but a side effect that I want to wait for? ",
"Yeah I had the same question actually, probably better to ask @connor-mccarthy to enlighten us about the thoughts behind this new pattern.\r\n\r\nJust a general workaround I can think of, would be letting the downstream task explicitly retry-check-loop to verify the side effect I guess, though this really should be achieved by DAG dependencies.",
"@kakaxilyp @MaxGrtz, the original reason for blocking use of `task_a.after(task_b)` where `task_b` is defined in a loop is that it introduces some runtime behavior ambiguity: should `task_b` run after all `task_a` instances finish? Just one `task_a` finishes? Something else?\r\n\r\nThat being said, this issue has been discussed a few times and I think it's worth revisiting this choice. It seems reasonable to me to just agree on what the `.after` means and support it.\r\n\r\nI will look into this and follow up on this thread. Thank you for bringing this up.",
"@connor-mccarthy Thanks for the clarification.\r\nWhat do you think about support of after for task groups? Is is something that might be feasible long term?",
"BTW:\r\nI solved this for now basically as @kakaxilyp suggested. I added a dummy output for the inner task (e.g. 0) and created a task for printing a List of int and used `dsl.Collected` to collect the inner task results. \r\nThen the next task can be made dependent on to the print task with `.after` again.",
"> What do you think about support of after for task groups? Is is something that might be feasible long term?\r\n\r\nThis definitely is something worth considering, though there are some syntactical challenges with referring to the `TasksGroup` object, particularly with the `dsl.ParallelFor` case. For example, this reads a bit strange:\r\n\r\n```python\r\nwith dsl.ParallelFor([1, 2, 3]) as x:\r\n comp_1(num=x)\r\n\r\ncomp_2(text='hi').after(x)\r\n```\r\n\r\nWhen using the context manager, the `dsl.ParallelFor` instance \"becomes\" the int variable `x`. Referring to it as the `TasksGroup` afterward is slightly abusing it's meaning as an int variable. These little changes in meaning are where some of the complexity in the authoring experience starts to creep in.\r\n\r\n@MaxGrtz and @kakaxilyp, I think maybe the best option here is to wrap the `ParallelFor` sub-DAG in a pipeline, nest the pipeline, and call `.after()` on the inner pipeline. This is fully supported in the current 2.x.x release.\r\n\r\n```python\r\n@dsl.pipeline\r\ndef inner():\r\n with dsl.ParallelFor([1, 2, 3]) as x:\r\n comp(num=x)\r\n\r\n@dsl.pipeline\r\ndef outer():\r\n inner_task = inner()\r\n comp().after(inner_task)\r\n```\r\n\r\n(untested, but this should be approximately correct)",
"> though there are some syntactical challenges with referring to the TasksGroup object, particularly with the dsl.ParallelFor case. \r\n\r\n@connor-mccarthy I see. Thats really ambiguous. \r\n\r\nI like the nested pipeline approach you proposed. I tried it and it works like a charm. Thanks!",
"BTW we can avoid defining a separate pipeline by assigning the `ParallelFor` to a variable before using it as a context manager.\r\n\r\n```py\r\ninner_task = dsl.ParallelFor([1, 2, 3])\r\nwith inner_task as x:\r\n comp_1(num=x)\r\ncomp_2(text='hi').after(inner_task)\r\n```",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-07T14:29:56" | "2023-08-26T07:42:31" | null | NONE | null | ### Environment
* KFP SDK version: 2.0.0b11
* All dependencies version:
kfp 2.0.0b11
kfp-pipeline-spec 0.2.0
kfp-server-api 2.0.0a6
### Steps to reproduce
The following example fails to even create the graph component from the pipeline function with:
"RuntimeError: Tasks cannot depend on an upstream task inside a ParallelFor that is not a common ancestor of both tasks. Task outer-op depends on upstream task inner-op."
```python
@dsl.component
def inner_op(x: str):
print(x)
@dsl.component
def outer_op():
print("outer task")
@dsl.pipeline(name="test-pipeline")
def pipeline():
with dsl.ParallelFor(items=[{"a": "1"}, {"a": "2"}]) as x:
inner_task = inner_op(x=x.a)
outer_task = outer_op().after(inner_task)
```
### Expected result
should work, including compilation.
<!-- What should the correct behavior be? -->
I want to be able to wait for the loop to complete before executing a following task.
I would expect this example to work or have another way of referencing the loop task group in the "after" call.
---
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"Thanks, @b4sus. I'd be happy to review your contribution if you'd like to work on this!"
] | "2023-02-07T08:36:16" | "2023-03-01T17:33:03" | "2023-03-01T17:33:03" | CONTRIBUTOR | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
<!-- /area samples -->
/area components
### What feature would you like to see?
So far the argument `pip_index_urls` is used only for lightweight python component. But when `target_image` is provided and therefore containerized python component can be generated with `kfp component build`, the argument is not considered - it is not a part of generated Dockerfile.
This is something that could be relatively easily (I think) implemented and I'd be happy to give it a try if there's interest.
### What is the use case or pain point?
Similarly as with lightweight python component, one might be using internal pypi index for internal libraries to be used in containerized components.
### Is there a workaround currently?
Yes. After running `kfp component build` modify generated Dockerfile (add --extra-index-url to the pip line), run docker build directly from commandline (not using `kfp` anymore) and then push the image.
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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"This is a beta release blocker. \r\n\r\n@gkcalat for awareness."
] | "2023-02-07T05:50:06" | "2023-03-10T00:55:51" | "2023-02-07T21:57:32" | COLLABORATOR | null | null | {
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"This has been resolved together with #8703 "
] | "2023-02-06T17:27:43" | "2023-04-11T18:33:23" | "2023-04-11T18:33:23" | MEMBER | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
<!-- For more information, see an overview of KFP installation options: https://www.kubeflow.org/docs/pipelines/installation/overview/. -->
KFP standalone
* KFP version:
<!-- Specify the version of Kubeflow Pipelines that you are using. The version number appears in the left side navigation of user interface.
To find the version number, See version number shows on bottom of KFP UI left sidenav. -->
KFP from master HEAD.
### Steps to reproduce
<!--
Specify how to reproduce the problem.
This may include information such as: a description of the process, code snippets, log output, or screenshots.
-->
1. Deploy KFP
2. Create an experiment
3. Try to archive
4. Archived experiments are still listed as active
5. Archived experiment are missing from "Archived"
### Expected result
<!-- What should the correct behavior be? -->
4. Missing the archived experiments among the active ones
5. Showing archived experiments in "Achived"
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
This is caused by the latest change in API and how the values in backend:
[Old values](https://github.com/kubeflow/pipelines/blob/master/backend/api/v1beta1/experiment.proto#L177-L181):
```
STORAGESTATE_UNSPECIFIED = 0;
STORAGESTATE_AVAILABLE = 1;
STORAGESTATE_ARCHIVED = 2;
```
[New values](https://github.com/kubeflow/pipelines/blob/master/backend/api/v2beta1/experiment.proto#L89-L98):
```
STORAGE_STATE_UNSPECIFIED = 0;
AVAILABLE = 1;
ARCHIVED = 2;
```
As the old values are non-compliant to [AIP-216](https://google.aip.dev/216), I propose to update the frontend query.
---
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] | null | [] | "2023-02-06T17:21:18" | "2023-02-07T00:21:33" | "2023-02-07T00:21:33" | MEMBER | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
<!-- For more information, see an overview of KFP installation options: https://www.kubeflow.org/docs/pipelines/installation/overview/. -->
KFP standalone
* KFP version:
<!-- Specify the version of Kubeflow Pipelines that you are using. The version number appears in the left side navigation of user interface.
KFP from master branch
### Steps to reproduce
<!--
Specify how to reproduce the problem.
This may include information such as: a description of the process, code snippets, log output, or screenshots.
-->
1. Deploy KFP.
2. Try to create a run from the sample pipelines.
3. Error message dialog will show the error validating the manifests.
### Expected result
<!-- What should the correct behavior be? -->
A run.
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
We need to handle the case with PipelineSpec field is empty in the backend.
**Note**: a fix is in progress.
---
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"Thanks for raising this, @Roymprog. The Vertex AI Pipelines team is aware of this.\r\n\r\nFor posterity, here is a minimal reproducible example:\r\n\r\n```python\r\nfrom kfp import dsl\r\n\r\n@dsl.component\r\ndef c(a: dsl.Input[dsl.Artifact], b: dsl.Input[dsl.Artifact]):\r\n print(a)\r\n print(b)\r\n\r\n@dsl.pipeline\r\ndef p():\r\n i = dsl.importer(\r\n artifact_uri='gs://ml-pipeline-playground/shakespeare1.txt',\r\n artifact_class=dsl.Dataset)\r\n t = c(a=i.output, b=i.output)\r\n```",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-06T10:09:13" | "2023-08-26T07:42:33" | null | NONE | null | ### Environment
* KFP version:
Running KFP (v2 pipelines) on Vertex AI.
* KFP SDK version:
1.8.18
* All dependencies version:
- kfp 1.8.18
- kfp-pipeline-spec 0.1.16
- kfp-server-api 1.8.5
### Steps to reproduce
```python
from kfp.v2.dsl import component, pipeline, Input, Output, Dataset
@component(base_image=TRAIN_IMAGE)
def output_step(
output_data: Output[Dataset],
):
import pandas as pd
train_df = pd.DataFrame(
[
{
"id": "A",
"value": 10
},
{
"id": "B",
"value": 5
}
]
)
output_data.path = f"{output_data.path}.csv"
train_df.to_csv(output_data.path, index=False)
@component(base_image=TRAIN_IMAGE)
def train_and_forecast_prophet(
train_data: Input[Dataset],
article_data: Input[Dataset],
output_data: Output[Dataset],
other_output_data: Output[Dataset]
):
import pandas as pd
df_train = pd.read_csv(train_data.path)
articles = pd.read_csv(article_data.path)
output_data.path = f"{output_data.path}.csv"
df_train.to_csv(output_data.path, index=False)
other_output_data.path = f"{other_output_data.path}.csv"
articles.to_csv(other_output_data.path, index=False)
@pipeline(name="test-pipeline")
def pipeline():
output = output_step()
train_and_forecast_prophet(
output.outputs["output_data"],
output.outputs["output_data"]
)
```
### Expected result
Expected the pipeline to run successfully, but it fails with:
```
articles = pd.read_csv(article_data.path)
AttributeError: 'NoneType' object has no attribute 'path'
```
It appears one can only pass an output parameter once to the same pipeline component. Not sure if this is intentional or a bug.
In my case, I have a component I reuse multiple times in a pipeline, once with the inputs mapping to the same output, another time they are different outputs.
### Materials and Reference
---
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"@zijianjoy Hello, I would like to hear your thoughts on this feature request, do you think it would be feasible in KFP v2?. \r\nThanks ",
"I think this feature is already supported for ROC curve, confusion matrix, and scalar metrics. Can you check if the followings match your need?\r\n\r\nCompare pipeline runs: https://www.kubeflow.org/docs/components/pipelines/v1/sdk-v2/run-comparison/\r\n\r\nHow to create V2 metrics: https://www.kubeflow.org/docs/components/pipelines/v1/sdk/output-viewer/#v2-sdk-use-sdk-visualization-apis",
"@zijianjoy thank you for your feedback. \r\nTo the best of my knowledge, I do not think this feature is already supported given the currently available output types. \r\nLet me try to explain why it is not the case for each of them : \r\n- A ROC Curve is meant to be used to asses the trade-off between the true positive rate and false positive rate for a model using tresholds. \r\n - If we take the use case described by this feature request, if we wanted to plot the `train_loss` vs the `val_loss` metrics (which under the hood is just two list of floats), we would not be able to since there is no concept of true positive and false positive in this case.\r\n![image](https://user-images.githubusercontent.com/26939775/217280295-10c3a7c5-f405-46f9-bbe4-5494de988325.png)\r\n - The use case described by the feature request is to be able to plot a list of floats regardless of its underlying semantic, so a list of `train_loss` or `val_loss` is one example, a list of accuracy values (floats) is another example.\r\n![image](https://user-images.githubusercontent.com/26939775/217280619-c17c81ae-d47d-4904-9b88-344ac204a537.png) \r\nExample: \r\n```python\r\naccuracy_values: list[float] = [] \r\n\r\nfor epoch in range(number_of_epochs):\r\n ...\r\n epoch_accuracy: float = ...\r\n accuracy_values.append(epoch_accuracy) \r\n \r\nmetrics.log_metric(y=accuracy_values)\r\n```\r\n - We could have KFP set the X axis to numeric values from 1 to N by default where N is the number of elements in the list we are asking to plot or the sdk could allow to set the custom X axis values if the default does not suit us eg: `metrics.log_metric(y=accuracy_values, x=numpy.arange(start=1, stop=len(accuracy_values), step=1)` \r\n would be the same as : `metrics.log_metric(y=accuracy_values)` by default. \r\n\r\n- A confusion matrix is meant to be used to represent the performance of a model for various categories of labels. For instance, It can display if a model predicted cat 7/10 times when the true value was cat and 3/10 times when the true value was dog etc.\r\n - It is not meant to display a list of values (eg: list of floats like for `train_loss`, `val_loss`, accuracy value**s** list etc). \r\n - The feature request suggests an approach that can plot arbitrary list of values regardless of the model type (classification, regression etc). We could also extend this to support multiple list of values like matplotlib plot can. For instance if we want to plot the predicted stock price values vs the actual prices, we could do so by calling the `metrics.log_metric` method twice, once with the predicted y and another time with the actual y. \r\nExample : \r\n`my_metrics.log_metric(y=actual_y)`, `my_metrics.log_metric(y=predicted_y)`\r\nThat's just one example, if this would be possible, then by extension this would allow to plot the actual values vs predicted values of various methods/models (multiple predicted y), same principe, we would call the `metrics.log_metric` for the actual values and once for each predicted values list. \r\nExample: \r\n```python \r\nactual_y: list[float] = ...\r\nmy_metrics.log_metric(y=actual_y) \r\n\r\nfor model_index in range(number_of_models):\r\n predicted_y = models[model_index](X)\r\n my_metrics.log_metric(y=predicted_y)\r\n```\r\nHere is an example I have already done in the past, here we have 3 list of floats, one for the actual values (the yellow curve), one for the predicted values of a model without bagging (red curve) and one for a model with bagging (blue curve) : \r\n![image](https://user-images.githubusercontent.com/26939775/217279403-c9d2fa8f-408f-4a62-a9f4-7b358e05f0f5.png)\r\n- As for the scalar metrics, it is what was described in this feature request as being one approach that is currently possible but does not hit home.\r\n - This approach would not plot the values but rather only show one value or the list of values but would not be presented in a plot making it impossible to reason about. \r\n![image](https://user-images.githubusercontent.com/26939775/217281733-cd8bd300-3601-4469-8d85-3fd9eead9a1c.png)\r\n - If this output metric type would plot a list of values instead of showing the raw values it would be a first step in the right direction but considering the other usages (like multiple list of values on the same plot), the KFP sdk should check if creating a new output metric type would be easier (I do not know if creating a new type or adapting this one would be easier to implement in the sdk so feel free to correct me).\r\n \r\nHopefully this clarifies the intent of the feature requested here. \r\n \r\nLet me know what you think :) \r\n",
"@chensun @connor-mccarthy @Linchin @gkcalat\r\nFeel free to give your feedback as well , curious to know if you guys think it would be possible to implement in the future for KFP v2.",
"Thank you for the explanation, if I understand correctly, there is a need for plot drawing metrics, which is generic enough that users can specify the `name of metrics`, `number of metrics`, `Name of x/y axis`, `upper bound and lower bound of x/y axis`, `x/y axis value for each numerical metrics`. \r\n\r\nPlease confirm if this understanding is correct, and whether you think it is valuable to compare two or more of such numerical metrics on UI?",
"If you are interested in making contribution, will you be able to start a design doc for this feature? I feel that there can be multiple options to implement this.",
"> if I understand correctly, there is a need for plot drawing metrics, which is generic enough that users can specify the name of metrics, number of metrics, Name of x/y axis, upper bound and lower bound of x/y axis, x/y axis value for each numerical metrics.\r\nPlease confirm if this understanding is correct \r\n\r\n@zijianjoy Yes, your understanding is correct this is exactly it. \r\nI think that there are some interesting decisions to make as to what must be provided by the sdk user and what can be inferred and used as default values. \r\n\r\n> whether you think it is valuable to compare two or more of such numerical metrics on UI? \r\n\r\nI think it would be extremely valuable to be able to compare at least two of such numerical metrics on the UI (eg: one from run A and one from run B). Ideally we would have the option to have the two plots merged together when comparing 2 runs. We should also be able to view plot A from run A side-by-side to the plot A' from run A'. For instance, when comparing model accuracies during training we would have 1 list of numerical value per run, in this case the merge view makes more sense, but when comparing the train loss and val loss of one run vs the train loss and val loss of another run, we would end up with 2x2 = 4 lines on the same plot. This is still ok for most cases in the merged view, but if we have 5 runs that's 10 lines on the same plot, it could become hard to visualize all of those lines so in this case, perhaps the user would decide that the side-by-side make more sense now. There could be a toggle button in the UI so that user can decide if it's better to \"merge\" the plots for comparison or to see them \"side-by-side\" for their use case. \r\nFor ease of comparison, we could also make the range of the x and y axis be the min and max of the x and y axis for all logged metrics. \r\nA clear use case of this (but use cases are not limited to this example) would be to compare the same numerical metrics for two models, this is fairly common in experiment tracking solutions : \r\n<img src=\"https://user-images.githubusercontent.com/26939775/217971306-2c2d45a1-1f97-4e46-83f2-9db3a7241ceb.png\" height=\"300\"/> \r\n \r\n> If you are interested in making contribution, will you be able to start a design doc for this feature? I feel that there can be multiple options to implement this. \r\n \r\nYes I am willing to create such document. \r\nI think you are right, there are a lot of options each with their pros and cons. \r\nThis will allow the community to weigh in on some of these options and implementation details that might affect KFP users experience. \r\n\r\n",
"@zijianjoy Here is the link to the [design doc](https://bit.ly/3HSK5i9) so far. \r\nI tried adding in some thoughts about SDK design and possible APIs and default values etc. \r\nLet me know what you think and feel free to request access to it so I can grant you editor access. \r\nThis is my first design doc for Kubeflow so please don't hesitate to let me know if I got the structure completely wrong. ",
"Hello @zijianjoy , would it be possible to get an update on my latest replies https://docs.google.com/document/d/1mVsV4C02stBlamhQm0bPeBsFDBsXdQXD7gyMJ4l-A6s/edit?usp=drivesdk\r\nIf my understanding of your proposal is correct, it seems like your proposal would greatly reduce the scope and therefore simplify the implementation of the feature.\r\nWhat do you think? Is that right?",
"Thank you @AlexandreBrown for the design doc! \r\n\r\nTo answer your question: Yes you captured my suggestion correctly and thanks for adding this point to the design doc.\r\n\r\nAlso, I have brought this to the KFP team for discussion. \r\nWe think that the generic numerical values metrics can be useful, but it might not be able to cover all use cases because:\r\n- The data format for numerical values metrics is an additional workload for users to learn and adopt.\r\n- If users need a different visualization approach, it is hard to adjust existing data format to adopt new requirements.\r\n- We have existing functionality in KFPv1 like Tensorboard which can provide same and more advanced support: https://www.kubeflow.org/docs/components/pipelines/v1/sdk/output-viewer/#tensorboard. \r\n\r\nWould you like to evaluate whether Tensorboard can fulfill your need? If yes, this feature request will be about supporting Tensorboard in KFPv2. And we welcome contributions for this feature.",
"@zijianjoy Thanks for the reply and bringing this to the KFP team. \r\nYes I believe Tensorboard would be more than suitable for this as it is a pretty well-rounded solution for metrics comparison, model preview, data preview and more. \r\n \r\nTherefore I will rename this issue to better reflect this realization so that we can track Tensorboard support for KFPv2.",
"@zijianjoy \r\nBeing able to have the Tensorboard data for a run and see the run metrics is important and useful as a core feature. \r\n\r\nIn addition to what was possible with v1, I think a nice feature that could be added once Tensorboard support is aded would be to add a way to aggregate the Tensorboard logs of multiple runs to then offer a Tensorboard view with data from multiple runs.\r\n\r\nUnder the hood it could be as straightforward as downloading the data from S3 of multiple runs then create a folder with all runs data. Then once all the data is in one folder we can ask Tensorboard to display logs under this root folder. \r\nTo the best of my knowledge this would be an easy way to compare tensorboard data of multiple runs.\r\n \r\nCurrently we would need to create a notebook, download the Tensorboard logs of multiple runs and then launch Tensorboard on this folder that includes all runs tensorboard data. \r\nThis is possible but a bit tedious, adding this as part of Kubeflow Pipeline compare view would make comparing tensorboard metrics much faster and effective in my opinion. \r\n \r\nLet me know if you think about this, if Kubeflow Pipelines could easily add such feature or not (roughly speaking).",
"It would be nice to have Tensorboard gaining direct access to a KFP artifact, which maybe kind of model training log files that Tensorboard can deal with, and the Tensorboard can be tight integrated into visualization section of the KFP components. \r\n\r\nI had also issue to use an on-prem s3 bucket with ssl certificate validation turned off for current Tensorboard, while writing logs to s3 bucket from KFP component is also a lot of template coding. These all may be benefited from an additional `Output[TFLog]` in V2.\r\n\r\nPlease let me know your thoughts on this matter. If you like the idea please give a thumbs up! ",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-03T21:01:53" | "2023-08-26T07:42:35" | null | NONE | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
/area frontend
/area backend
/area sdk
<!-- /area samples -->
<!-- /area components -->
### What feature would you like to see?
As a Kubeflow Pipelines user, I would like to be able to use the SDK to log a list of numerical values and to be able to view it in Kubeflow UI and compare multiple runs to see how they compare.
It is very common when performing ML trainings to want to log some metrics over time eg: log a list of accuracy values over the epochs during training to get a learning curve or simply the `train_loss` and `val_loss` for instance.
This can also be used to compare how 2 models differ (eg: accuracy over time of model 1 vs accuracy over time of model 2).
Example:
<img src="https://user-images.githubusercontent.com/26939775/216708839-ad8a9135-af31-43fc-8ad9-6b66b48fc36f.png" height="300"/>
<img src="https://user-images.githubusercontent.com/26939775/216712850-9658c74b-f976-41c7-a7db-cfde32dc15a7.png" height="300"/>
### What is the use case or pain point?
The use case is to be able to easily compare runs for metrics that are more meaningful when represented as a list of numerical values instead of a single value.
Currently we can use `Output[Metrics]` to store a single key value pair metric (eg: using key=`train_accuracy` and value=`123`) or we can log a `dict`, the first approach does not allow to get all the values and the second approach is not suitable because it is super hard to reason about.
Here is an example of the two approaches (with random values just to illustrate the point):
<img src="https://user-images.githubusercontent.com/26939775/216711722-e789df50-59ed-4fcb-84c4-3df5f1281f67.png" height="100"/>
<img src="https://user-images.githubusercontent.com/26939775/216711611-9b86e58d-edde-4b2c-87a7-51702a34d3f1.png" height="300"/>
Adding this feature could allow the possibility to offer an option to overlap the 2 scatter plots of 2 runs for easier comparison (should remain an optional button because in some case it's easier to view the 2 plots separately).
### Is there a workaround currently?
Right now the workaround is to plot the values (eg: using matplotlib) during a pipeline step then to convert the matplotlib figure to an image (eg: jpg or png) then to convert the image to a base64 string that can be used in an `<img>` HTML tag that we can then log by using `Output[Markdown]` or `Output[HTML]`.
This is works but it has downsides :
- Does not support to dynamically scrub the values when viewing the visualisations after the execution of the pipeline
- Cannot be used to overlap 2+ runs and see how they compare for the same metric
- Requires some boilerplate code (plotting, converting to an image, image to base64, html etc)
Adding this feature would also keep Kubeflow competitive with other solutions which offer this kind of feature (eg: w&b, dvc pipelines, MLFlow etc)
---
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https://api.github.com/repos/kubeflow/pipelines/issues/8792 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8792/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8792/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8792/events | https://github.com/kubeflow/pipelines/issues/8792 | 1,570,147,074 | I_kwDOB-71UM5dlosC | 8,792 | Cannot Import functions written in the same file | {
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"@vikashg, I suspect you are describing a component runtime error for a [Lightweight Python Component](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#1-lighweight-python-function-based-components).\r\n\r\nThis is expected behavior; the Lightweight Python Component function only has access to the code/symbols defined within its scope [[ref](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#1-lighweight-python-function-based-components:~:text=A%20standalone%20Python%20function%20is%20a%20function%20that%20does%20not%20reference%20any%20symbols%20defined%20outside%20of%20its%20scope.)]. Consider trying [Containerized Python Components](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#2-containerized-python-components) to use non-hermetic component functions.",
"Thanks @connor-mccarthy "
] | "2023-02-03T16:57:44" | "2023-02-24T03:45:16" | "2023-02-23T23:52:03" | NONE | null | Hello all,
I am trying to build a pipeline, the structure of which is like the following
`some_function.py`: This file contains 2 functions `func1` and `func2`. `func2` uses `func1` and gives an output
in my pipeline I will import the func2 as
`from some_function import func2`
due to this I get the following error
`NameError: name `func1` is not defined`
But if I copy the contents of `func1` inside `func2`, this works. Can someone shed some light on this? I am not able to figure this out.
Thanks in advance
![image](https://user-images.githubusercontent.com/3863212/216661909-b47211b1-0e10-48e1-b2fd-3ceb642924b3.png)
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"I've managed to find a workaround for this. The point is that the @component decorator is necessary for `kfp component build ...` and later when compiling/running the pipeline. But the target image and the code in it should not have it (at least not with current sdk version). Steps:\r\n1. run `kfp component build ...` - this will generate few files (ini, Dockerfile, yaml, requirements.txt), build the image and push it. This is the image which contains the decorator and will fail with missing __annotations__\r\n2. comment out the decorator\r\n3. build & push the image directly with docker (Dockerfile and other meta files are already there from step 1) - now image with non-decorated function will be pushed\r\n4. uncomment the decorator\r\n5. compile/run the pipeline using the component",
"I'm experiencing the same issue. Is this something that would be easy to fix for the next release?\r\n",
"The workaround described by @b4sus worked for me though (https://github.com/kubeflow/pipelines/issues/8791#issuecomment-1419168779)",
"Thanks for raising this, @b4sus and @micmarty-deepsense. I am working on a fix.",
"Huge thanks @connor-mccarthy! ๐ \r\nI'm gonna try it.",
"@micmarty-deepsense, [2.0.0-beta.13](https://pypi.org/project/kfp/2.0.0b13/) contains this fix, so you should be able to try from this version."
] | "2023-02-03T14:34:19" | "2023-02-28T00:57:12" | "2023-02-28T00:42:52" | CONTRIBUTOR | null | ### Environment
* KFP version:
2.0.0-alpha.5
* KFP SDK version:
2.0.0b9
* All dependencies version:
kfp 2.0.0b9
kfp-pipeline-spec 0.1.16
kfp-server-api 2.0.0a6
### Steps to reproduce
I am following these [instructions](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#2-containerized-python-components) to create containerized python component. I am able to build the component and push the image using kfp cli.
I am not quite sure how to use the component in pipeline, this is what I am doing:
Component file (components/mycomp.py):
```python
@component(
base_image='python:3.11-slim',
target_image='...',
packages_to_install=['pandas >=1.5.3']
)
def do_stuff(some_id: str, output_df: Output[Artifact]):
print(f'Hello {some_id} from containerized component')
df = pd.DataFrame(np.random.default_rng().random((4, 3)))
with open(output_df.path, 'w') as fp:
df.to_csv(fp, index=False)
```
Pipeline definition file
```python
import components.mycomp
@dsl.pipeline(name='cont-pipeline')
def cont_pipelinesome_id: str):
task1 = components.mycomp.do_stuff(some_id=some_id)
```
Then I can either run the pipeline or compile, upload and run. During run the image is downloaded and executed, but fails with following error:
```
[KFP Executor 2023-02-03 13:41:08,810 INFO]: --component_module_path is not specified. Looking for component `do_stuff` in config file `kfp_config.ini` instead
[KFP Executor 2023-02-03 13:41:08,810 INFO]: Loading KFP component "do_stuff" from mycomp.py (directory "." and module name "mycomp")
[KFP Executor 2023-02-03 13:41:09,067 INFO]: Got executor_input:
{
"inputs": {
"parameterValues": {
"some_id": "asd"
}
},
"outputs": {
"artifacts": {
"output_df": {
"artifacts": [
{
"type": {
"schemaTitle": "system.Artifact",
"schemaVersion": "0.0.1"
},
"uri": "minio://mlpipeline/v2/artifacts/pipeline/cont-pipeline/88d0c5ea-b5c0-4fc2-b461-6aa2d4233c5c/do_stuff/output_df"
}
]
}
},
"outputFile": "/tmp/kfp_outputs/output_metadata.json"
}
}
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "/usr/local/lib/python3.11/site-packages/kfp/components/executor_main.py", line 105, in <module>
executor_main()
File "/usr/local/lib/python3.11/site-packages/kfp/components/executor_main.py", line 98, in executor_main
executor = component_executor.Executor(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/kfp/components/executor.py", line 63, in __init__
output_artifact = self.make_artifact(
^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/kfp/components/executor.py", line 81, in make_artifact
annotation = func.__annotations__.get(name)
^^^^^^^^^^^^^^^^^^^^
AttributeError: 'PythonComponent' object has no attribute '__annotations__'
F0203 13:41:09.239538 36 main.go:49] failed to execute component: exit status 1
Error: exit status 1
```
Why I think it is an sdk problem - looking at executor_main.py, this is how the function is loaded:
```
function_to_execute = getattr(module, func_name)
```
and later in [Executor.__init__](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/components/executor.py#L81) the __annotations__ are accessed and the error is raised.
The `func` (or `function_to_execute` above) is not the actual function `do_stuff` (as the code seems to expect), but it is the PythonComponent because `do_stuff `is decorated with @component, that's why the annotations are not there.
Am I creating the pipeline incorrectly (and what would be the correct way?) perhaps or is it a bug?
### Expected result
Pipeline runs successfully.
---
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"@jayaprasadt Thanks for reaching out. Would you mind sharing what type of issue you're trying to fix? If the change is related to pipeline template, it won't start from the failed step by design.\r\n\r\nAt the meantime, we suggest you to try the KFP v2 to see whether the problem exists.",
"@jlyaoyuli Thanks for confirming the pipeline won't start from the failed step if the change is related to pipeline template. I'll try KFP v2 and let you know. ",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-03T10:41:41" | "2023-08-26T07:42:37" | null | NONE | null | ### Environment
<!-- Please fill in those that seem relevant. -->
* How can I restart the Kubeflow pipeline after fixing error in a failed step, retaining the data/model in previous steps?
* I'm running a pipeline that has 4 steps/components
1. Download Data
2. Load data as frame
3. Train and save model
4. Predict
If the 'Predict' step/component fails because of a syntax error, is there a way to restart the run only for the 'Predict' step after fixing the error?
This should retain the data and model info till the 'Train and save model' step, and rerun only the modified 'Predict' component.
<!-- For more information, see an overview of KFP installation options: https://www.kubeflow.org/docs/pipelines/installation/overview/. -->
* KFP version: 1.6.3
<!-- Specify the output of the following shell command: $pip list | grep kfp -->
> kfp 1.6.3
> kfp-pipeline-spec 0.1.16
> kfp-server-api 1.6.0
### Steps to reproduce
Create a pipeline with more than one component / step.
Run the pipeline with a syntax error in any step other than the first step.
Fix the error in the failed step/component and retry the pipeline.
Pipeline starts from the first step onward losing all the data and models from previous run.
<!--
Specify how to reproduce the problem.
This may include information such as: a description of the process, code snippets, log output, or screenshots.
-->
### Expected result
The pipeline should retain the data and model info from previous run and start rerunning from the failed step.
<!-- What should the correct behavior be? -->
### Materials and reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
### Labels
<!-- Please include labels below by uncommenting them to help us better triage issues -->
<!-- /area frontend -->
<!-- /area backend -->
<!-- /area sdk -->
<!-- /area testing -->
<!-- /area samples -->
<!-- /area components -->
---
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https://api.github.com/repos/kubeflow/pipelines/issues/8788 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8788/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8788/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8788/events | https://github.com/kubeflow/pipelines/issues/8788 | 1,568,977,209 | I_kwDOB-71UM5dhLE5 | 8,788 | which version of gcr.io/ml-pipeline/api-server has driver task in argo workflow? | {
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"anyone knows this issue?",
"@elim19 Thanks for reaching out! The driver task is supported in KFP v2 SDK. https://www.kubeflow.org/docs/components/pipelines/v2/run-a-pipeline/"
] | "2023-02-03T00:29:57" | "2023-02-17T00:00:50" | "2023-02-17T00:00:50" | NONE | null | I see in the pipeline code(tag 1.8.5), when pipeline is transformed to argo workflow, it will create a driver task to make podSpecPatch to the pod, but when I deployed 1.8.5 gcr.io/ml-pipeline/api-server, I don't see this feature, which version have this driver task? | {
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"We've upgraded golang to 1.20: https://github.com/kubeflow/pipelines/blob/c0640d7a033b6fa2133b92c2a459d9eb3dabee32/backend/Dockerfile#L16\r\n\r\nAlso I can confirm we no longer see this CVE in our latest api-server image (2.0.0-rc.1)"
] | "2023-02-02T18:45:15" | "2023-06-07T20:08:26" | "2023-06-07T20:08:25" | NONE | null | ### Environment
* How do you deploy Kubeflow Pipelines (KFP)?
KFP is deployed via a 'full kubeflow deployment' on GKE
* KFP version:
Kubeflow v1.5.0
### Steps to reproduce
A security scanning tool running against our kubeflow cluster (Orca Security) detected that the ml-pipeline-api-server pod is vulnerable to denial of service attacks "because an HTTP/2 connection can hang during closing if shutdown were preempted by a fatal error" (https://nvd.nist.gov/vuln/detail/CVE-2022-27664). This vulnerability has been patched in Go versions 1.19.1 and beyond.
Is this a known issue? If so, do plans exist to upgrade the version of Go used to build the image for this service, or are there any recommended steps for intermediate remediation?
### Expected result
If necessary, patching the CVE-2022-27664 security vulnerability
### Materials and reference
https://nvd.nist.gov/vuln/detail/CVE-2022-27664
### Labels
<!-- Please include labels below by uncommenting them to help us better triage issues -->
<!-- /area frontend -->
<!-- /area backend -->
<!-- /area sdk -->
<!-- /area testing -->
<!-- /area samples -->
/area components
---
<!-- Don't delete message below to encourage users to support your issue! -->
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"Does it work for 1.8.5 but not for 1.8.9? Not sure which local deployment methods are you using, and did you get any specific error? \r\nMaybe you've already seen this, but here's our local deployment instruction: https://www.kubeflow.org/docs/components/pipelines/v1/installation/localcluster-deployment/",
"Yes It works for 1.8.5 but not for 1.8.9. I am using the same docuemntation for installation => \r\nhttps://www.kubeflow.org/docs/components/pipelines/v1/installation/localcluster-deployment/\r\n",
"Sorry, I followed the reported message without checking the facts. We don't have a release tag for 1.8.9. \r\nThe latest is 1.8.5 for deployment.\r\nYou might have been confused by the KFP SDK version?"
] | "2023-02-02T17:19:07" | "2023-02-17T00:05:02" | "2023-02-17T00:05:01" | NONE | null | Changing pipeline version doesn't work during local deployment
The following commands does not work for PIPELINE_VERSION=1.8.9
```
export PIPELINE_VERSION=1.8.5
kubectl apply -k "github.com/kubeflow/pipelines/manifests/kustomize/cluster-scoped-resources?ref=$PIPELINE_VERSION"
kubectl wait --for condition=established --timeout=60s crd/applications.app.k8s.io
kubectl apply -k "github.com/kubeflow/pipelines/manifests/kustomize/env/platform-agnostic-pns?ref=$PIPELINE_VERSION"
``` | {
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"Hi, @AlbertCintas. If you're using KFP v2 (BE nearly in beta), the following example should demonstrate the usage you're looking for:\r\n\r\n```python\r\nfrom kfp import compiler\r\nfrom kfp import dsl\r\nfrom kfp.dsl import component\r\n\r\n\r\n@component\r\ndef print_op(message: str):\r\n \"\"\"Prints a message.\"\"\"\r\n print(message)\r\n\r\n\r\n@component\r\ndef fail_op(message: str):\r\n \"\"\"Fails.\"\"\"\r\n import sys\r\n print(message)\r\n sys.exit(1)\r\n\r\n\r\n@component\r\ndef get_run_state(status: dict) -> str:\r\n print('Pipeline status: ', status)\r\n return status['state']\r\n\r\n\r\n@dsl.pipeline\r\ndef exit_op():\r\n print_op(message='notify task failure.')\r\n\r\n\r\n@dsl.pipeline\r\ndef my_pipeline():\r\n exit_task = exit_op()\r\n\r\n with dsl.ExitHandler(exit_task):\r\n print_op(message='message')\r\n fail_op(message='Task failed.')\r\n```",
"Thank you for your answer!\r\n\r\nTried this method, but couldn't compile it with two components (loaded from a file) called from inside the exit_op. ",
"@AlbertCintas, could you share a minimal reproducible example, as well as the SDK version?",
"Hello, sorry for the late answer, I've been on vacation. I think I might have not been clear with my request, sorry for that.\r\n\r\nWhat I need are two components as part of the exit handler component (one performs cleanup, the other sends a notification). Unfortunately, we're still running KFP v1, even though I've been compiling some pipelines to be V2_compatible. I've tried so many ways of doing it, but none compiles (if using v1) or works in KFP v1 (if compiled using v2).\r\n\r\nFollowing your example, what I would need is something like this:\r\n```\r\n@component\r\ndef cleanup_op():\r\n print(\"This component performs cleanup\")\r\n\r\n@component\r\ndef notification_op():\r\n print(\"This component sends a notification\")\r\n\r\n@component\r\ndef print_op(message: str):\r\n \"\"\"Prints a message.\"\"\"\r\n print(message)\r\n\r\n@dsl.pipeline\r\ndef exit_op():\r\n cleanup_op()\r\n notification_op()\r\n\r\n@dsl.pipeline\r\ndef my_pipeline():\r\n exit_task = exit_op()\r\n\r\n with dsl.ExitHandler(exit_task):\r\n print_op(message='message')\r\n```\r\n\r\nIs it possible to do this in KFP v1? I was reading Argo documentation and it is possible to have multiple exit handlers running and even choose which one to run depending on a condition, but I've found nothing related for Kubeflow.",
"I see, @AlbertCintas. This is not possible in v1.\r\n\r\nIn v2, you can use a pipeline as your exit task to accomplish this: https://github.com/kubeflow/pipelines/blob/9926f31a3a0f5c250a8b31ce474f16bb72520ab5/sdk/python/test_data/pipelines/pipeline_as_exit_task.py#L51",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-02T15:38:42" | "2023-08-26T07:42:39" | null | NONE | null | Hello!
Is it possible to run two steps with two components in the Exit Handler? Maybe some workaround to perform a similar task?
I've been trying to do it in many different ways but all attempts have been unsuccessful.
Thank you! | {
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"Hi @MatthewRalston , you need to create parent directories for the output path, before you can write the data. See example: https://github.com/kubeflow/pipelines/blob/61a6172e7d88e21ee90af8b3ecf63b0224b8172c/sdk/python/test_data/pipelines/pipeline_with_outputs.py#L36",
"@chensun that's a nice example, and thank you so much, but it doesn't alone solve this issue for users!\r\n\r\nSpecifically, the developer should suggest documentation pages! Examples of this behavior elsewhere! Where in the documentation does it connect the filename, the component's OutputPath returned, how that name gets acquired, and why/where the user needs to specify, instead of Kubeflow, the output directory path and then the user has to make it themselves????\r\n\r\n\r\nThis isn't solved! @vanpelt can you suggest something more direct? This is very much a documentation smell, a code smell, possibly a versioning confilct (v1.8 kfp standards vs v2.0 migration), and actually a *ghost* feature: specifically because *after reading Google's Kubeflow documentation for production Kubernetes environments* there is no mention of explicit artifact or directory creation as recommended. How to save artifacts on my v1.6.1 Manifest standard installation?\r\n\r\nAlso, the issue seems to be *tagged* incorrectly as well. This *might* not even be a 'kfp' issue per-se, but something related to artifact saving, kubeflow instance configuration, etc.\r\n\r\nEveryone (but not just the very attentive and helpful @chensun ) keeps recommending I modify *syntax* to address the problem.\r\n\r\n\r\nThis problem emerges from lack of documentation and implicit conventions, instead of completed version-specific docs, detailing how artifact saving process may be in flux, and the conventions at play (\"/tmp/data/Outputs\" needs to be created, are you sure @chensun ?)",
"Still really confused about this. This seems confusing that Kubeflow doesn't manage files on its own. Is this a syntax issue, or is my Kubeflow instance malformed?\r\n\r\n@chensun can you maybe tag someone from the Manifests group to review this configuration?\r\n\r\n\r\nMinikube, kustomize, minio\r\n\r\n minikube 1.28.0\r\n kustomize 3.2.0\r\n kubernetes/kubectl 1.22.2\r\n docker 20.10.21\r\n containerd v1.6.10\r\n\r\n\r\n```bash\r\n>kustomize version\r\nVersion: {KustomizeVersion:3.2.0 GitCommit:a3103f1e62ddb5b696daa3fd359bb6f2e8333b49 BuildDate:2019-09-18T16:26:36Z GoOs:linux GoArch:amd64}\r\n>minio --version\r\nminio version RELEASE.2023-01-20T02-05-44Z (commit-id=0f591d245d3a1810b0e6aebbf3f32937227f68f8)\r\nRuntime: go1.19.5 linux/amd64\r\nLicense: GNU AGPLv3 <https://www.gnu.org/licenses/agpl-3.0.html>\r\nCopyright: 2015-0000 MinIO, Inc.\r\n>minikube addons enable istio\r\n>istioctl install --set revision=canary\r\n>minikube kubectl -- create -f config/profile.yaml\r\n```\r\n\r\n* `config/profile.yaml`\r\n\r\n```yaml\r\n\r\n resourceQuotaSpec: # resource quota can be set optionally\r\n hard:\r\napiVersion: kubeflow.org/v1beta1\r\nkind: Profile\r\nmetadata:\r\n name: user\r\nspec:\r\n owner:\r\n kind: User\r\n name: email@example.org\r\n recourceQuotaSpec:\r\n hard:\r\n cpu: \"3000m\"\r\n memory: 100Gi\r\n pods: \"24\"\r\n requests.nvidia.com/gpu: \"1\"\r\n persistentvolumeclaims: \"1\"\r\n requests.storage: \"200Gi\"\r\n \r\n```\r\n\r\n\r\nThen, I do various obvious port-forwarding routines locally to expose the Kubeflow dashboard.\r\n\r\n\r\nAfter starting vanilla minikube, I apply the 1.6.1 Kubeflow/manifests to the cluster as per instructions.\r\n\r\nDo I need to adjust something in my configuration, or is this, as @chensun suggests, simply a v1.8 syntax issue requiring me to create directories for output files to somehow be managed by kubeflow?"
] | "2023-02-02T14:33:55" | "2023-02-10T01:12:03" | "2023-02-02T23:56:28" | NONE | null | @chensun I spun off this new issue related to `/tmp/outputs/Output/data: no such file or directory`
![image](https://user-images.githubusercontent.com/4308024/214195224-97f16a56-0f6d-4034-bc56-b656da247507.png)
_Originally posted by @MatthewRalston in https://github.com/kubeflow/pipelines/issues/8683#issuecomment-1401289909_
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https://api.github.com/repos/kubeflow/pipelines/issues/8778 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8778/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8778/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8778/events | https://github.com/kubeflow/pipelines/issues/8778 | 1,566,446,654 | I_kwDOB-71UM5dXhQ- | 8,778 | [feature] Add dataclass for filter | {
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"@JakeSummers, I think this is a good idea. If you're interested in contributing this (including the [docs](https://github.com/kubeflow/website) fix) I would happy to review your PR.",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-01T16:42:34" | "2023-08-26T07:42:41" | null | NONE | null | ### Feature Area
/area sdk
/area samples
### What feature would you like to see?
#6748 added support for filters.
The suggested workflow, is to build the predicates like this ([doc](https://www.kubeflow.org/docs/components/pipelines/v1/tutorials/sdk-examples/#example-2-listing-pipelines-with-a-filter)).:
```
filter = json.dumps(
{
'predicates': [
{
'key': 'name',
'op': 1, # <-- NOTE: 1 means "EQUALS" - very hard to read.
'string_value': '{}'.format(pipeline_name)
}
]
})
```
It would be much nicer, if the sdk provided a dataclass that would help to build these predicates. Something like this:
```
from dataclasses import dataclass
from enum import Enum
from typing import List
# https://www.kubeflow.org/docs/components/pipelines/v1/tutorials/sdk-examples/#example-2-listing-pipelines-with-a-filter
# https://github.com/kubeflow/pipelines/blob/64bf95333ccc3a0411793c4a11325b71595ab150/backend/api/filter.proto#L25-L63
class Operation(Enum):
# Operators on scalar values. Only applies to one of |int_value|,
# |long_value|, |string_value| or |timestamp_value|.
EQUALS = 1
NOT_EQUALS = 2
GREATER_THAN = 3
GREATER_THAN_EQUALS = 5
LESS_THAN = 6
LESS_THAN_EQUALS = 7
# Checks if the value is a member of a given array, which should be one of
# |int_values|, |long_values| or |string_values|.
IN = 8
# Checks if the value contains |string_value| as a substring match. Only
# applies to |string_value|.
IS_SUBSTRING = 9
@dataclass()
class Predicate:
key: str
op: Operation
string_value: str
@dataclass
class Filter:
predicates: List[Predicate]
```
This could then be used like this:
```
my_filter = Filter([
Predicate(
key="name",
op=Operation.EQUALS,
string_value="my-experiment"
)
])
```
As an aside, the inline doc is currently, broken:
![image](https://user-images.githubusercontent.com/5657503/216106309-2b0f3e02-32f1-4fa8-a88a-b9f2eceb8a05.png)
### What is the use case or pain point?
Needing to build json, particularly json that uses `'op': 1` where `1` means `Equals` is not very user friendly.
### Is there a workaround currently?
Yes.
---
<!-- Don't delete message below to encourage users to support your feature request! -->
Love this idea? Give it a ๐.
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"Looking at this a bit further, it seems like it is not asking for the `namespace` but for the `experiment`. \r\n\r\nChanging this: \r\n\r\n```\r\n current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None)\r\n```\r\n\r\nTo this: \r\n\r\n```\r\n current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None, experiment_id=123)\r\n```\r\n\r\nFixed the issue. ",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-02-01T16:11:57" | "2023-08-26T07:42:43" | null | NONE | null | ### Environment
* KFP version: kubeflow 1.6 and kubeflow pipelines 1.8.3
* KFP SDK version: 1.8.12
### Steps to reproduce
```
# Create a kfp client with a namespace
client = kfp.Client(kubeflow_host.host,
namespace="NamespaceJake", # NOTE: Namespace is provided here!
existing_token=token,
)
# List recurring runs:
current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None)
```
I get the following error:
```
Traceback (most recent call last):
...
File "code.py", line 66, in _find_recurring_run
current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None)
File "/.../site-packages/kfp/_client.py", line 1200, in list_recurring_runs
response = self._job_api.list_jobs(
File "/.../site-packages/kfp_server_api/api/job_service_api.py", line 689, in list_jobs
return self.list_jobs_with_http_info(**kwargs) # noqa: E501
File "/.../site-packages/kfp_server_api/api/job_service_api.py", line 790, in list_jobs_with_http_info
return self.api_client.call_api(
File "/.../site-packages/kfp_server_api/api_client.py", line 364, in call_api
return self.__call_api(resource_path, method,
File "/.../site-packages/kfp_server_api/api_client.py", line 188, in __call_api
raise e
File "/.../site-packages/kfp_server_api/api_client.py", line 181, in __call_api
response_data = self.request(
File "/.../site-packages/kfp_server_api/api_client.py", line 389, in request
return self.rest_client.GET(url,
File "/.../site-packages/kfp_server_api/rest.py", line 230, in GET
return self.request("GET", url,
File "/.../site-packages/kfp_server_api/rest.py", line 224, in request
raise ApiException(http_resp=r)
kfp_server_api.exceptions.ApiException: (400)
Reason: Bad Request
HTTP response headers: HTTPHeaderDict({'x-powered-by': 'Express', 'content-type': 'application/json', 'date': 'Wed, 01 Feb 2023 15:52:17 GMT', 'content-length': '437', ...)
HTTP response body: {"error":"Invalid input error: ListJobs must filter by resource reference in multi-user mode.","code":3,"message":"Invalid input error: ListJobs must filter by resource reference in multi-user mode.","details":[{"@type":"type.googleapis.com/api.Error","error_message":"ListJobs must filter by resource reference in multi-user mode.","error_details":"Invalid input error: ListJobs must filter by resource reference in multi-user mode."}]}
```
### Expected result
When I instantiated the kfp client, I provided my namespace. I should not need to provide the namespace to the `list_recurring_runs`.
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8776 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8776/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8776/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8776/events | https://github.com/kubeflow/pipelines/issues/8776 | 1,566,381,082 | I_kwDOB-71UM5dXRQa | 8,776 | `list_recurring_runs` needs a namespace filter even-though the kfpClient was instantiated with a namespace | {
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"I logged this under the wrong area. Relogging as #8777"
] | "2023-02-01T16:02:25" | "2023-02-01T16:13:11" | "2023-02-01T16:13:10" | NONE | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)? _Not sure - hosted by another team_
* KFP version: kubeflow 1.6 and kubeflow pipelines 1.8.3
* KFP Client version: 1.8.12
### Steps to reproduce
```
# Create a kfp client with a namespace
client = kfp.Client(kubeflow_host.host,
namespace="NamespaceJake", # NOTE: Namespace is provided here!
existing_token=token,
)
# List recurring runs:
current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None)
```
I get the following error:
```
Traceback (most recent call last):
...
File "code.py", line 66, in _find_recurring_run
current_recurring_runs: ApiListJobsResponse = client.list_recurring_runs(page_token=None)
File "/.../site-packages/kfp/_client.py", line 1200, in list_recurring_runs
response = self._job_api.list_jobs(
File "/.../site-packages/kfp_server_api/api/job_service_api.py", line 689, in list_jobs
return self.list_jobs_with_http_info(**kwargs) # noqa: E501
File "/.../site-packages/kfp_server_api/api/job_service_api.py", line 790, in list_jobs_with_http_info
return self.api_client.call_api(
File "/.../site-packages/kfp_server_api/api_client.py", line 364, in call_api
return self.__call_api(resource_path, method,
File "/.../site-packages/kfp_server_api/api_client.py", line 188, in __call_api
raise e
File "/.../site-packages/kfp_server_api/api_client.py", line 181, in __call_api
response_data = self.request(
File "/.../site-packages/kfp_server_api/api_client.py", line 389, in request
return self.rest_client.GET(url,
File "/.../site-packages/kfp_server_api/rest.py", line 230, in GET
return self.request("GET", url,
File "/.../site-packages/kfp_server_api/rest.py", line 224, in request
raise ApiException(http_resp=r)
kfp_server_api.exceptions.ApiException: (400)
Reason: Bad Request
HTTP response headers: HTTPHeaderDict({'x-powered-by': 'Express', 'content-type': 'application/json', 'date': 'Wed, 01 Feb 2023 15:52:17 GMT', 'content-length': '437', ...)
HTTP response body: {"error":"Invalid input error: ListJobs must filter by resource reference in multi-user mode.","code":3,"message":"Invalid input error: ListJobs must filter by resource reference in multi-user mode.","details":[{"@type":"type.googleapis.com/api.Error","error_message":"ListJobs must filter by resource reference in multi-user mode.","error_details":"Invalid input error: ListJobs must filter by resource reference in multi-user mode."}]}
```
### Expected result
When I instantiated the kfp client, I provided my namespace. I should not need to provide the namespace to the `list_recurring_runs`.
Impacted by this bug? Give it a ๐. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8775 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8775/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8775/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8775/events | https://github.com/kubeflow/pipelines/issues/8775 | 1,565,729,846 | I_kwDOB-71UM5dUyQ2 | 8,775 | Use a custom python function in two different components of kubeflow pipelines | {
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"name": "kind/feature",
"color": "2515fc",
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] | closed | false | null | [] | null | [
"Hi @Rstar1998 , you can achieve that using \"Containerized Python components\": https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#2-containerized-python-components"
] | "2023-02-01T09:14:21" | "2023-02-02T23:50:56" | "2023-02-02T23:50:55" | NONE | null | For example I have a custom function
```
def do_something(a,b):
//doing something
return something
@component(
packages_to_install=["xyz"],
base_image="python:3.9",
output_component_file="component_1.yaml"
)
def component_1(
query: str,
df_path: Output[Dataset]
):
import xyz
do_something(a,b);
@component(
packages_to_install=["xyz"],
base_image="python:3.9",
output_component_file="component_2.yaml"
)
def component_2(
query: str,
df_path: Output[Dataset]
):
import mnc
do_something(m,c);
```
How Use a custom python function in two different components of kubeflow pipelines ? | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8768 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8768/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8768/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8768/events | https://github.com/kubeflow/pipelines/issues/8768 | 1,563,993,479 | I_kwDOB-71UM5dOKWH | 8,768 | is there any doc about kfp-launcher, I just upgrade to pipeline v2, found kfp use this binary to start the pod command | {
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"Hi @elim19, you may find more info about launcher in the design doc we shared with the community: [bit.ly/kfp-v2](https://bit.ly/kfp-v2)\r\nTo gain access to the doc, please join https://groups.google.com/g/kubeflow-discuss google group.\r\n"
] | "2023-01-31T09:57:17" | "2023-02-03T00:28:56" | "2023-02-02T23:46:35" | NONE | null | is there any doc about kfp-launcher, I just upgrade to pipeline v2, found kfp use this binary to start the pod command | {
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"/assign @chensun ",
"We also experience the very same issue, once our cluster Auto-Scales. All logs are gone and NOT read from our mirror in MINIO (interface of KFP to access S3) / AWS S3 (physical location).",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-26T06:52:18" | "2023-08-26T07:42:45" | null | NONE | null | I have set up logging.info () at various places in my code and the UI Log console is retrieving only a few of them. I have also noticed that it stops logging in the middle and the last log I see is Tearing down program. Although my pipeline doesn't seem to fail anywhere, I can see this happening across most of them.
I have used this as to set up my logs.
# Set up logging
root = logging.getLogger()
root.setLevel(logging.INFO)
handler = logging.StreamHandler(sys.stdout)
handler.setLevel(logging.INFO)
This has worked well previously and hasn't been working fine since last 4-5 days.
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"/assign @gkcalat ",
"Hi @deepk2u!\r\nIt may be due to insufficient resource provisioning or the lack of etc maintenance (see [here](https://etcd.io/docs/v3.3/op-guide/maintenance/)). How longs did it take for you to reach these numbers?",
"It's an eks cluster. We connected with AWS support and they are maintaining the cluster and running defragmentation and doing all kinds of maintenance for etcd.\r\n\r\n\r\nthe oldest object I have on the list is from 14th July 2022.\r\n",
"Can check how large are your pipeline manifests used in these recurring runs?",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-25T04:25:41" | "2023-08-26T07:42:47" | null | CONTRIBUTOR | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
Full Kuebflow deployment using manifests
* KFP version: 2.0.0b6
* KFP SDK version: 2.0.0b6
### Steps to reproduce
We have around 125 recurring runs within a single namespace. After a few months of historical runs, we have started seeing performance issues in the k8s cluster.
After digging deeper, we found that we are seeing timeouts in the calls to etcd. When we checked the etcd database for objects we found that one particular namespace which has 125 recurring runs is taking 996MB of etcd space
some data to look at:
```
Entries by 'KEY GROUP' (total 1.6 GB):
+----------------------------------------------------------------------------------------------------------+--------------------------------+--------+
| KEY GROUP | KIND | SIZE |
+----------------------------------------------------------------------------------------------------------+--------------------------------+--------+
| /registry/kubeflow.org/scheduledworkflows/<namespace1> | ScheduledWorkflow | 996 MB |
| /registry/kubeflow.org/scheduledworkflows/<namespace2> | ScheduledWorkflow | 211 MB |
| /registry/kubeflow.org/scheduledworkflows/<namespace3> | ScheduledWorkflow | 118 MB |
.....
```
namespace1 has 123 recurring runs
namespace2 has 40 recurring runs
namespace3 has 63 recurring runs
### Expected result
Looks like we are storing a lot of unnecessary information in the ScheduledWorkflow object, which eventually is taking space in etcd database resulting in all the performance issues
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"/assign @chensun ",
"I'm seeing something similar when trying to test with a local k3s install. I installed kfp 2.0.0b12 backend and sdk, and then used the example [from the new 2.0.0b12 docs](https://kubeflow-pipelines.readthedocs.io/en/2.0.0b12/#getting-started), but I get errors. Oddly enough, I was able to run v1-compiled pipelines, but I couldn't get the example from the docs, or anything v2 to work.",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-24T15:55:20" | "2023-08-26T07:42:49" | null | NONE | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
/area backend
### What feature would you like to see?
<!-- Provide a description of this feature and the user experience. -->
We would like to run a KFP v2 pipeline in a multi-user environment.
### What is the use case or pain point?
<!-- It helps us understand the benefit of this feature for your use case. -->
We deployed KF in a multi user environment with `kfp==2.0.0b5`, which supports KPF v2. We tried to run a simple KFP v2 [pipeline](https://www.kubeflow.org/docs/components/pipelines/v2/compile-a-pipeline/#compile-a-pipeline) and a [pipeline](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#special-case-importer-components) with an importer component. Running the first example resulted in this error:
```
F1014 10:08:22.858076 19 main.go:49] failed to execute component: failed to pre-publish Pod info to ML Metadata:
get execution ID=169: rpc error: code = Unavailable desc = connection error: desc = "transport: Error while dialing
dial tcp: address tcp/$(METADATA_GRPC_SERVICE_PORT): unknown port"
```
while running the second one in this error:
```
F0118 11:29:01.454870 16 main.go:49] failed to execute importer component: Failed
GetContextByTypeAndName(type="system.Pipeline", name="pipeline-with-importer")
```
The pain point in our use case is that the MLMD server `address` and `port`, are passed in the launcher via environment variables
```
--mlmd_server_address
$(METADATA_GRPC_SERVICE_HOST)
--mlmd_server_port
$(METADATA_GRPC_SERVICE_PORT)
```
set either in the `podSpecPatch` the driver creates ([source](https://github.com/kubeflow/pipelines/blob/78d31dc8a3600a0907d1a7604552e9f8197809d0/backend/src/v2/driver/driver.go#L334)), or in the importer code ([source](https://github.com/kubeflow/pipelines/blob/master/backend/src/v2/compiler/argocompiler/importer.go#L79)). Taking into consideration that in our use case, the KFP v2 pipelines will run on a multi-user deployment, these environment variables are not set by the kubelet on the pipeline steps' pods, because the service is in a different namespace.
In our deployment, the MLMD service is in the `kubeflow` namespace, so the pods created in the user's namespace (e.g., `kubeflow-user`) don't get the service's `port` and `address` environment variables.
We've thought of the following: since the driver speaks to a certain MLMD client, registers the step in MLMD (context, execution, etc.), and creates the `podSpecPatch` for the launcher, it should forward this MLMD endpoint to the launcher, so that they don't end up speaking to different MLMD services. What do you think?
/cc @chensun @zijianjoy @Linchin @elikatsis @StefanoFioravanzo
### Is there a workaround currently?
<!-- Without this feature, how do you accomplish your task today? -->
Unfortunately, there isn't any at the moment. Everything is hardcoded.
---
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https://api.github.com/repos/kubeflow/pipelines/issues/8747 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8747/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8747/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8747/events | https://github.com/kubeflow/pipelines/issues/8747 | 1,552,184,183 | I_kwDOB-71UM5chHN3 | 8,747 | KFP building component with local custom utils.py throws "No module named 'utils'" | {
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"@samcaetano, I recommend you try KFP SDK v2 (`pip install kfp --pre`). It is in beta phase, but stable.",
"Any update on this?",
"@LuigiCerone, no fix for this yet. This is captured by https://github.com/kubeflow/pipelines/issues/8385. Let's treat that one as the canonical bug and close this one, since the other has more discussion."
] | "2023-01-22T16:26:21" | "2023-03-17T20:37:45" | "2023-03-17T20:37:45" | NONE | null | https://github.com/kubeflow/pipelines/blob/8f472d98723b446a1eecca2db48664fc08cfcde7/sdk/python/kfp/components/utils.py#L47
I have found this issue while trying to build a component from my main.py script, which imports my local custom utils1.py script. But when I run `kfp components build my_component/ `, all I get is:
```
INFO: Building component using KFP package path: kfp==1.8.18
main
No module named 'utils1'
```
I have follow the kfp components source script, while debugging, till I found this line (which throws the above error). It appears that kubeflow will try to import the main.py as a module for the environment, but it fails to recognize local import since those files are not mapped yet.
My main.py is a component that imports utils1.py in the preamble of the file. And my dir is structured as follows:
my_component/
|- main.py
|- utils1.py | {
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"/assign @chensun",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-20T15:18:50" | "2023-08-26T07:42:51" | null | NONE | null | ### Feature Area
/area backend
### What feature would you like to see?
<!-- Provide a description of this feature and the user experience. -->
Make the driver and launcher images configurable, at deployment time via environment variables, or a kustomize overlay.
### What is the use case or pain point?
<!-- It helps us understand the benefit of this feature for your use case. -->
There are two use cases that suggest the images to be configurable.
1. Testing the deployment end-to-end
2. Special deployments/distributions
**Testing the deployment end-to-end**
Right now, the driver and launcher images are strictly tied to the apiserver image. This means that if the admin changes the code of either the driver or the launcher, they will have to:
1. build the driver and launcher images
4. modify the apiserver code to change the hardcoded images
5. build the apiserver image
6. use the new apiserver image to the deployment
7. test the new image
8. repeat this process for every bug found in the driver or launcher code
This takes more time and effort, since the admin has to build the apiserver image, although they have only changed the hardcoded values of the driver and launcher images.
**Special deployments/distributions**
A use case we've seen in production is airgapped clusters. Airgapped environments have no access to the internet, which means that they cannot pull images from GCR. Changing the apiserver code should be avoided when someone wants to deploy a KFP release. Otherwise, the admin would have to maintain a fork of the KFP project in order to use a private image registry to pull the driver and launcher images.
### Is there a workaround currently?
<!-- Without this feature, how do you accomplish your task today? -->
As regards to testing, unfortunately, only modifying the corresponding images in the apiserver code and rebuilding the apiserver image. This is not an ideal scenario. It needs extra effort and time to maintain it.
For the airgapped environment on the other hand, there is not a workaround at the moment.
/cc @chensun @zijianjoy @Linchin @elikatsis @StefanoFioravanzo
---
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"/assign @chensun ",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-20T05:45:14" | "2023-08-27T07:41:43" | null | NONE | null | ### Environment
<!-- Please fill in those that seem relevant. -->
* How do you deploy Kubeflow Pipelines (KFP)?
I deployed Kubeflow by docker driver on minikube
```
minikube start --driver=docker --kubernetes-version=1.23.14 --memory=12g --cpus=4
```
* KFP version:
1.6.0
* KFP SDK version:
2.0.0b2
### Steps to reproduce
<img width="573" alt="image" src="https://user-images.githubusercontent.com/63439911/213625117-2e7e4d32-6f92-4cbd-8982-ac4e3b5a98ef.png">
### Expected result
There should not be error because there is a model.h5 in the directory.
<img width="1097" alt="image" src="https://user-images.githubusercontent.com/63439911/213625626-1ce3758a-7a0e-43cd-a41c-5656eab1ba49.png">
Since no model outputs detected, the further task cannot be completed like this.
<img width="630" alt="image" src="https://user-images.githubusercontent.com/63439911/213625932-62c91689-0744-43b1-b167-8a9fa3d09d5c.png">
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"`kfp==2.0.0b10` and `kfp-pipeline==0.1.17` are yanked. This is no longer be an issue."
] | "2023-01-20T00:35:32" | "2023-01-20T21:46:19" | "2023-01-20T21:46:19" | MEMBER | null | If you are getting `kfp_server_api.exceptions.ApiException: (400)` errors when trying to run a pipeline and have `kfp-pipeline-spec==0.1.17` installed in your environment, you must `pip install kfp<=2.0.0b9 kfp-pipeline-spec==0.1.16` and pin these dependencies in your KFP SDK environment. | {
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https://api.github.com/repos/kubeflow/pipelines/issues/8736 | https://api.github.com/repos/kubeflow/pipelines | https://api.github.com/repos/kubeflow/pipelines/issues/8736/labels{/name} | https://api.github.com/repos/kubeflow/pipelines/issues/8736/comments | https://api.github.com/repos/kubeflow/pipelines/issues/8736/events | https://github.com/kubeflow/pipelines/issues/8736 | 1,550,051,687 | I_kwDOB-71UM5cY-ln | 8,736 | feat(backend): migrate v1 data to v2 storage format | {
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"/cc @gkcalat ",
"This has been fixed in #8633"
] | "2023-01-19T22:38:17" | "2023-03-10T00:54:43" | "2023-02-07T00:27:12" | COLLABORATOR | null | null | {
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"Hi @fstetic!\r\nThank you for reporting this. Could you please share more details on this: error message, logs, yaml pipeline spec?",
"@fstetic, if you `pip install kfp-pipeline-spec==0.1.16` is the error resolved?",
"@gkcalat sure!\r\n\r\nHere is the full error message:\r\n`{\"error_message\":\"Error creating pipeline: Create pipeline failed: InvalidInputError: unknown template format: pipeline spec is invalid\",\"error_details\":\"Error creating pipeline: Create pipeline failed: InvalidInputError: unknown template format: pipeline spec is invalid\"}`\r\nand here is the YAML spec:\r\n```\r\n# PIPELINE DEFINITION\r\n# Name: addition-pipeline\r\n# Inputs:\r\n# a: int\r\n# b: int\r\n# c: int [Default: 10.0]\r\ncomponents:\r\n comp-addition-component:\r\n executorLabel: exec-addition-component\r\n inputDefinitions:\r\n parameters:\r\n num1:\r\n parameterType: NUMBER_INTEGER\r\n num2:\r\n parameterType: NUMBER_INTEGER\r\n outputDefinitions:\r\n parameters:\r\n Output:\r\n parameterType: NUMBER_INTEGER\r\n comp-addition-component-2:\r\n executorLabel: exec-addition-component-2\r\n inputDefinitions:\r\n parameters:\r\n num1:\r\n parameterType: NUMBER_INTEGER\r\n num2:\r\n parameterType: NUMBER_INTEGER\r\n outputDefinitions:\r\n parameters:\r\n Output:\r\n parameterType: NUMBER_INTEGER\r\ndeploymentSpec:\r\n executors:\r\n exec-addition-component:\r\n container:\r\n args:\r\n - --executor_input\r\n - '{{$}}'\r\n - --function_to_execute\r\n - addition_component\r\n command:\r\n - sh\r\n - -c\r\n - \"\\nif ! [ -x \\\"$(command -v pip)\\\" ]; then\\n python3 -m ensurepip ||\\\r\n \\ python3 -m ensurepip --user || apt-get install python3-pip\\nfi\\n\\nPIP_DISABLE_PIP_VERSION_CHECK=1\\\r\n \\ python3 -m pip install --quiet --no-warn-script-location 'kfp==2.0.0-beta.10'\\\r\n \\ && \\\"$0\\\" \\\"$@\\\"\\n\"\r\n - sh\r\n - -ec\r\n - 'program_path=$(mktemp -d)\r\n\r\n printf \"%s\" \"$0\" > \"$program_path/ephemeral_component.py\"\r\n\r\n python3 -m kfp.components.executor_main --component_module_path \"$program_path/ephemeral_component.py\" \"$@\"\r\n\r\n '\r\n - \"\\nimport kfp\\nfrom kfp import dsl\\nfrom kfp.dsl import *\\nfrom typing import\\\r\n \\ *\\n\\ndef addition_component(num1: int, num2: int) -> int:\\n return\\\r\n \\ num1 + num2\\n\\n\"\r\n image: python:3.7\r\n exec-addition-component-2:\r\n container:\r\n args:\r\n - --executor_input\r\n - '{{$}}'\r\n - --function_to_execute\r\n - addition_component\r\n command:\r\n - sh\r\n - -c\r\n - \"\\nif ! [ -x \\\"$(command -v pip)\\\" ]; then\\n python3 -m ensurepip ||\\\r\n \\ python3 -m ensurepip --user || apt-get install python3-pip\\nfi\\n\\nPIP_DISABLE_PIP_VERSION_CHECK=1\\\r\n \\ python3 -m pip install --quiet --no-warn-script-location 'kfp==2.0.0-beta.10'\\\r\n \\ && \\\"$0\\\" \\\"$@\\\"\\n\"\r\n - sh\r\n - -ec\r\n - 'program_path=$(mktemp -d)\r\n\r\n printf \"%s\" \"$0\" > \"$program_path/ephemeral_component.py\"\r\n\r\n python3 -m kfp.components.executor_main --component_module_path \"$program_path/ephemeral_component.py\" \"$@\"\r\n\r\n '\r\n - \"\\nimport kfp\\nfrom kfp import dsl\\nfrom kfp.dsl import *\\nfrom typing import\\\r\n \\ *\\n\\ndef addition_component(num1: int, num2: int) -> int:\\n return\\\r\n \\ num1 + num2\\n\\n\"\r\n image: python:3.7\r\npipelineInfo:\r\n name: addition-pipeline\r\nroot:\r\n dag:\r\n tasks:\r\n addition-component:\r\n cachingOptions:\r\n enableCache: true\r\n componentRef:\r\n name: comp-addition-component\r\n inputs:\r\n parameters:\r\n num1:\r\n componentInputParameter: a\r\n num2:\r\n componentInputParameter: b\r\n taskInfo:\r\n name: addition-component\r\n addition-component-2:\r\n cachingOptions:\r\n enableCache: true\r\n componentRef:\r\n name: comp-addition-component-2\r\n dependentTasks:\r\n - addition-component\r\n inputs:\r\n parameters:\r\n num1:\r\n taskOutputParameter:\r\n outputParameterKey: Output\r\n producerTask: addition-component\r\n num2:\r\n componentInputParameter: c\r\n taskInfo:\r\n name: addition-component-2\r\n inputDefinitions:\r\n parameters:\r\n a:\r\n parameterType: NUMBER_INTEGER\r\n b:\r\n parameterType: NUMBER_INTEGER\r\n c:\r\n defaultValue: 10.0\r\n isOptional: true\r\n parameterType: NUMBER_INTEGER\r\nschemaVersion: 2.1.0\r\nsdkVersion: kfp-2.0.0-beta.10\r\n```\r\nYou made me try uploading it now without `defaultValue: 10.0` and `isOptional: true` and the problem isn't `defaultValue`, it's `isOptional`.\r\n\r\n---\r\n\r\nHi @connor-mccarthy! The error isn't resolved, the YAML spec looks identical. Also, pip throws a dependency error when installing `kfp-pipeline-spec 0.1.16`: `kfp 2.0.0b10 requires kfp-pipeline-spec<0.2.0,>=0.1.17, but you have kfp-pipeline-spec 0.1.16 which is incompatible`\r\n",
"+1 Got exactly the same issue (same version but our Kubeflow is on EKS).",
"**SOLUTION**\r\nIn the short term, this is resolved by downgrading to `kfp==2.0.0b9` (and recompiling your pipeline with this version). In the long term, this will be resolved for `kfp>=2.0.0b10` by the upcoming KFP BE beta release.\r\n\r\ncc @chensun @gkcalat @Linchin "
] | "2023-01-19T10:45:25" | "2023-06-06T07:20:38" | "2023-06-06T07:20:38" | NONE | null | ### Environment
* KFP version:
<!-- For more information, see an overview of KFP installation options: https://www.kubeflow.org/docs/pipelines/installation/overview/. -->
Local Canonical Kubeflow using [this guide](https://charmed-kubeflow.io/docs/quickstart)
* KFP SDK version:
<!-- Specify the version of Kubeflow Pipelines that you are using. The version number appears in the left side navigation of user interface.
To find the version number, See version number shows on bottom of KFP UI left sidenav. -->
Bottom of KFP UI left sidenav says build version dev_local and the guide states 1.6
* All dependencies version:
<!-- Specify the output of the following shell command: $pip list | grep kfp -->
kfp 2.0.0b10
kfp-pipeline-spec 0.1.17
kfp-server-api 2.0.0a6
### Steps to reproduce
<!--
Specify how to reproduce the problem.
This may include information such as: a description of the process, code snippets, log output, or screenshots.
-->
Try to upload a pipeline with default values in pipeline function definition.
E.g.
```
@dsl.pipeline(name='addition-pipeline')
def my_pipeline(a: int, b: int, c: int = 10):
```
### Expected result
<!-- What should the correct behavior be? -->
Pipeline should be uploaded or, if this is the expected behaviour because there exist the option `pipeline_parameters` in compiling, then the [documentation](https://www.kubeflow.org/docs/components/pipelines/v2/compile-a-pipeline/#compile-a-pipeline) should be updated.
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"Hi @fstetic!\r\nThank you for reporting this. Could you confirm whether the problem is persistent or if it goes away after the run completes?",
"Hi @gkcalat! Thanks for the quick response.\r\n\r\nThe run doesn't complete. That error happens at the start of the run.\r\n\r\nI tried a tutorial pipeline with v1 YAML spec and that one behaves as expected. I inspected MinIO bucket and found out that v1 pipelines make a dir named `<workflow name>` in `mlpipelines/artifacts`, but v2 don't. \"contextName\" in the error message stated in the issue corresponds to the RunID of the pipeline, not workflow name.\r\n\r\nI also noticed in network requests, when a run is opened in UI, a POST request to `/ml_metadata.MetadataStoreService/GetContextByTypeAndName` where v1 and v2 pipelines differ. V1 pipelines send `pipeline_run` in request body and v2 pipelines send `system.PipelineRun`. Don't know if that means anything because in both cases the request fails with `400` error and message `Cannot POST /ml_metadata.MetadataStoreService/GetContextByTypeAndName`\r\n\r\nI also raised this issue in Slack and a person responded that it might be related to a namespace/profile instantiation issue so I'll look into that next.",
"Hello @fstetic \r\n\r\nI am also having the same problem.\r\nHave you figured out what is wrong?\r\n\r\nTesting on 2.0.0-beta.1 for both API Server and UI, and kfp==2.0.0beta14",
"Hi @tleewongjaro-agoda. Unfortunately no, I gave up and downgraded to v1 pipelines.",
"/cc @chensun ",
"> Hello @fstetic\r\n> \r\n> I am also having the same problem. Have you figured out what is wrong?\r\n> \r\n> Testing on 2.0.0-beta.1 for both API Server and UI, and kfp==2.0.0beta14\r\n\r\nHave u fighred out now? Or any ideas?",
"I have the same problem reported above, I tried to downgrade to v1 pipelines but not a compatible version of the sdk anymore\r\n\r\nThe version below does not install\r\n`!pip install kfp==1.8.21`\r\n\r\nOutput:\r\n\r\nCollecting PyYAML<6,>=5.3\r\n Using cached PyYAML-5.4.1.tar.gz (175 kB)\r\n Installing build dependencies ... Getting requirements to build wheel ... error: subprocess-exited-with-error\r\n \r\n ร Getting requirements to build wheel did not run successfully.\r\n โ exit code: 1\r\n โฐโ> [62 lines of output]\r\n /tmp/pip-build-env-l8mhrdoz/overlay/lib/python3.10/site-packages/setuptools/config/setupcfg.py:293: _DeprecatedConfig: Deprecated config in `setup.cfg`\r\n !!\r\n ********************************************************************************\r\n The license_file parameter is deprecated, use license_files instead.\r\n By 2023-Oct-30, you need to update your project and remove deprecated calls\r\n or your builds will no longer be supported.\r\n See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.\r\n ********************************************************************************\r\n !!\r\n parsed = self.parsers.get(option_name, lambda x: x)(value)\r\n running egg_info\r\n writing lib3/PyYAML.egg-info/PKG-INFO\r\n writing dependency_links to lib3/PyYAML.egg-info/dependency_links.txt",
"The use of v1 pipelines is still viable?, I have the same problem reported above\r\n\r\nBut the proxy-agent pod is on CrashLoopBack, I searched the pod logs and the result is below\r\n\r\nIn the ui, I keep coming across this error without being able to use it\r\nError: failed to retrieve list of pipelines. Click Details for more information.\r\n\r\n+++ dirname /opt/proxy/attempt-register-vm-on-proxy.sh\r\n++ cd /opt/proxy\r\n++ pwd\r\n+ DIR=/opt/proxy\r\n++ jq -r '.data.Hostname // empty'\r\n++ kubectl get configmap inverse-proxy-config -o json\r\n+ HOSTNAME=\r\n+ [[ -n '' ]]\r\n+ [[ ! -z '' ]]\r\n++ curl http://metadata.google.internal/computeMetadata/v1/instance/zone -H 'Metadata-Flavor: Google'\r\n % Total % Received % Xferd Average Speed Time Time Time Current\r\n Dload Upload Total Spent Left Speed\r\n 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0curl: (6) Could not resolve host: metadata.google.internal\r\n+ INSTANCE_ZONE=/",
"Sorry๏ผI'm still using Pipeline v2. Can't help u. \r\n\r\n\r\n \r\n\r\n\r\n?????Enoch?????\r\n***@***.***\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n------------------ ๅๅง้ฎไปถ ------------------\r\nๅไปถไบบ: ***@***.***>; \r\nๅ้ๆถ้ด: 2023ๅนด9ๆ5ๆฅ(ๆๆไบ) ๆไธ6:56\r\nๆถไปถไบบ: ***@***.***>; \r\nๆ้: ***@***.***>; ***@***.***>; \r\nไธป้ข: Re: [kubeflow/pipelines] [backend] Cannot get MLMD objects from Metadata store when running v2 pipeline (Issue #8733)\r\n\r\n\r\n\r\n\r\n\r\n \r\nThe use of v1 pipelines is still viable?, I have the same problem reported above\r\n \r\nBut the proxy-agent pod is on CrashLoopBack, I searched the pod logs and the result is below\r\n \r\nIn the ui, I keep coming across this error without being able to use it\r\n Error: failed to retrieve list of pipelines. Click Details for more information.\r\n \r\n+++ dirname /opt/proxy/attempt-register-vm-on-proxy.sh\r\n ++ cd /opt/proxy\r\n ++ pwd\r\n \r\nDIR=/opt/proxy\r\n ++ jq -r '.data.Hostname // empty'\r\n ++ kubectl get configmap inverse-proxy-config -o json\r\n \r\nHOSTNAME=\r\n \r\n[[ -n '' ]]\r\n \r\n[[ ! -z '' ]]\r\n ++ curl http://metadata.google.internal/computeMetadata/v1/instance/zone -H 'Metadata-Flavor: Google'\r\n % Total % Received % Xferd Average Speed Time Time Time Current\r\n Dload Upload Total Spent Left Speed\r\n 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0curl: (6) Could not resolve host: metadata.google.internal\r\n \r\nINSTANCE_ZONE=/\r\n \r\nโ\r\nReply to this email directly, view it on GitHub, or unsubscribe.\r\nYou are receiving this because you commented.Message ID: ***@***.***>"
] | "2023-01-19T10:30:18" | "2023-09-06T02:12:32" | null | NONE | null | ### Environment
* How did you deploy Kubeflow Pipelines (KFP)?
Local Canonical Kubeflow using [this guide](https://charmed-kubeflow.io/docs/quickstart)
* KFP version:
Bottom of KFP UI left sidenav says `build version dev_local` and the guide states 1.6
* KFP SDK version:
kfp 2.0.0b10
kfp-pipeline-spec 0.1.17
kfp-server-api 2.0.0a6
### Steps to reproduce
Install Kubeflow using aforementioned guide. Copy addition pipeline and compile it and either run it after uploading through UI or run it from code. Both doesn't work.
### Expected result
Pipeline shouldn't fail.
### Materials and Reference
<!-- Help us debug this issue by providing resources such as: sample code, background context, or links to references. -->
In details it says `Cannot find context with {"typeName":"system.PipelineRun","contextName":"a5e7085e-ef10-48b2-a0a5-1ced3b93e2e5"}: Unknown Content-type received.`
Addition pipeline [from documentation](https://www.kubeflow.org/docs/components/pipelines/v2/compile-a-pipeline/#compile-a-pipeline)
```
from kfp import compiler
from kfp import dsl
@dsl.component
def addition_component(num1: int, num2: int) -> int:
return num1 + num2
@dsl.pipeline(name="addition-pipeline")
def my_pipeline(a: int, b: int, c: int):
add_task_1 = addition_component(num1=a, num2=b)
add_task_2 = addition_component(num1=add_task_1.output, num2=c)
cmplr = compiler.Compiler()
cmplr.compile(my_pipeline, package_path="my_pipeline.yaml")
```
---
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"Hi @HumairAK!\r\nThank you for reporting thins. Could you please share if you encounter this problem with `MySQL` DB?",
"@gkcalat Percona xtradb is a drop in replacement for mysql db so I expect the same queries are made against mysql db, they may not show up in stdout logs though, you may need to check the query logs for it. I'll try to dig up some time to test it out with mysql proper. I did try it with mariadb and I could find these drop queries in the query log.",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-19T04:52:31" | "2023-08-28T20:58:38" | null | NONE | null | When running a fresh deployment of pipelines (from kfp-tekton repo) using Percona Xtradb as a replacement db, I noticed some errors during start up in the logs where apiserver attempts to drop indexes named `Name` that don't exist.
```
{"log":"2023-01-18T19:01:09.808652Z 1 [ERROR] [MY-010584] [Repl] Slave SQL: Error 'Can't DROP 'Name'; check that column/key exists' on query. Default database: 'mlpipeline'. Query: 'DROP INDEX Name ON `experiments`', Error_code: MY-001091\n","file":"/var/lib/mysql/mysqld-error.log"}
```
I checked these tables out, and indeed it seems like no such index exists, though indexes on the columns "Name,Namespace" exist, but is called "name_namespace_index":
```
show indexes from pipelines;
+-----------+------------+----------------------+--------------+-------------+-----------+-------------+----------+--------+------+------------+---------+---------------+
| Table | Non_unique | Key_name | Seq_in_index | Column_name | Collation | Cardinality | Sub_part | Packed | Null | Index_type | Comment | Index_comment |
+-----------+------------+----------------------+--------------+-------------+-----------+-------------+----------+--------+------+------------+---------+---------------+
| pipelines | 0 | PRIMARY | 1 | UUID | A | 0 | NULL | NULL | | BTREE | | |
| pipelines | 0 | name_namespace_index | 1 | Name | A | 0 | NULL | NULL | | BTREE | | |
| pipelines | 0 | name_namespace_index | 2 | Namespace | A | 0 | NULL | NULL | YES | BTREE | | |
+-----------+------------+----------------------+--------------+-------------+-----------+-------------+----------+--------+------+------------+---------+---------------+
```
Seems to originate from [here](https://github.com/kubeflow/pipelines/blob/master/backend/src/apiserver/client_manager.go#L256-L264).
I'm guessing this may be a leftover from some migration procedure, but it seems strange to see these errors in my logs, maybe a check to see if these indexes exist before attempting to remove them would make more sense?
### Environment
Deploying kfp-tekton in OCP, but this seems like a general pipelines concern.
### Steps to reproduce
Any fresh deployment of kubeflow pipelines should result in these queries against the mlpipelines databse. Though some mysql/mysql-like db's may not display these errors in the console, you can find these queries being made in the query logs.
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"issue also present in kfp 2.0.0b11",
"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-19T03:11:55" | "2023-08-27T07:41:47" | null | NONE | null | ### Environment
Python version 3.8.6 Local Jupyter Notebook
MacBook Pro 2019
* KFP version: kfp 2.0.0b10
* KFP SDK version: kfp 2.0.0b10
* All dependencies version:
kfp 2.0.0b10
kfp-pipeline-spec 0.1.17
kfp-server-api 2.0.0a6
### Steps to reproduce
1. Create a repository in Artifact Registry in Google Cloud with kubeflow pipelines format. Replace the host with the repository created and upload a test component yaml file(i.e. pipeline with one component) to this repository. Example code as below:
```
from kfp.registry import RegistryClient
client = RegistryClient(host="https://us-east1-kfp.pkg.dev/<project_id>/component-test")
component_name, version = client.upload_pipeline("compoent.yaml", tags=["0.0.1"])
```
2. Use a **registryClient** and **component_name, version** variables from the previous step and run the code below
```
client.delete_version(component_name,version)
client.delete_package(component_name)
```
The given version is successfully deleted in Artifact Registry in GCP but raises the following error:
<img width="1025" alt="image" src="https://user-images.githubusercontent.com/105866640/213487957-fae2d435-63b6-40bf-aee0-31083bfaa3ee.png">
When no such version exists in the artifact registry repository, **delete_version** function will return True instead shown as below:
<img width="613" alt="image" src="https://user-images.githubusercontent.com/105866640/213488636-1401ff53-0c16-46f5-888e-5761fb4ada2a.png">
delete_package function raises the error regardless of the existence of the package.
<img width="1021" alt="image" src="https://user-images.githubusercontent.com/105866640/213486899-981040e9-dd49-4777-a3e0-7f9f0f354bef.png">
### Expected result
The given version is successfully deleted without raising any errors. The given package is deleted from Artifact Registry repository without any errors.
### Materials and Reference
<!-- Don't delete message below to encourage users to support your issue! -->
Impacted by this bug? Give it a ๐. | {
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"After another look, this is already supported."
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"I was able to reproduce it. A possible root cause for this behavior is a failed MLMD update at runtime. As UI calls MLMD to get states of individual node (tasks) in a DAG, we can observe inconsistent states between run' state and its underlying tasks' states. This is already implemented in the backend in #8850.\r\n\r\nTo fix, UI needs to switch to reading states of the nodes from the v2 API's [run details](https://github.com/kubeflow/pipelines/blob/2.0.0-beta.1/backend/api/v2beta1/run.proto#L200), which carries states for each task coming from the KFP DB.\r\n\r\nKFP DB (correct state):![mysql_updated](https://user-images.githubusercontent.com/35157096/236270780-ce61947f-09f0-4ad8-b98e-6d17456b1ec0.png)\r\n\r\nMLMD (stale):\r\n![MLMD_stale](https://user-images.githubusercontent.com/35157096/236270835-c01b472c-59c2-486d-be64-41f18120a563.png)\r\n\r\nUI integration is a post-GA work item: #8966 \r\n\r\n/cc @jlyaoyuli "
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"Is there a workaround for this issue in the meantime?"
] | "2023-01-18T21:28:10" | "2023-05-03T00:58:16" | "2023-05-03T00:58:15" | COLLABORATOR | null | Importer no longer works
```
F0118 21:12:37.782413 14 main.go:49] failed to execute importer component: failed to create MLMD artifact from ImporterSpec: failed to get or insert artifact type with schema title: system.Dataset: getOrInsertArtifactType(schema="title: system.Dataset") failed: rpc error: code = NotFound desc = No type found for query, name: `system.Dataset`, version: `nullopt`
Error: exit status 1
```
Likely due to it expects instanceSchema ([ref](https://github.com/kubeflow/pipelines/blob/88a9a31d86d34e61ac0cce9ed22f3455d91c5427/backend/src/v2/component/importer_launcher.go#L140)), while we only pass schemaTitle. | {
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* [x] #8729
* [x] #8728
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* [x] #8700
* [x] #8701
* [x] #8702
* [x] #8735 | {
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"2.0.0-beta.0 is released: https://github.com/kubeflow/pipelines/releases/tag/2.0.0-beta.0"
] | "2023-01-18T09:29:36" | "2023-02-15T19:28:05" | "2023-02-08T18:25:08" | COLLABORATOR | null | null | {
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] | "2023-01-18T08:33:14" | "2023-08-27T07:41:59" | null | COLLABORATOR | null | Up to debate/design on whether volume should be included in caching key.
(Open the issue to track an earlier thought). | {
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T23:58:28" | "2023-08-27T07:42:00" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
<!-- /area samples -->
<!-- /area components -->
### What feature would you like to see?
Migrate KFP SDK tests to use [`pytest`](https://docs.pytest.org/en/7.2.x/) only.
Currently we use [`absl.testing`](https://abseil.io/docs/python/guides/testing), [`unittest`](https://docs.python.org/3/library/unittest.html), and [`pytest`](https://docs.pytest.org/en/7.2.x/) together.
This includes at least the following steps:
* Convert unittest assertions to [pytest assertions](https://docs.pytest.org/en/7.1.x/how-to/assert.html)
* Drop remove subclassing (unittest.TestCase, absl.testing.parameterized.TestCase)
* Convert absl parameterization to pytest.mark.parametrize
* Possibly need to modify a small number of mocks?
* Move setup/teardown code into fixtures
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T22:28:11" | "2023-08-27T07:42:02" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
<!-- /area samples -->
<!-- /area components -->
Refactor [kfp.components.type_utils](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/components/types/type_utils.py) and [kfp.components.type_annotations](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/components/types/type_annotations.py)
Currently:
* Naming is inconsistent (particularly for mappings in `kfp.components.type_utils`)
* `type_utils` functions are confusing
* Unclear what the delineation is between `type_utils` and `type_annotations`. (Presumably everything that isnโt an annotation should go in `type_utils`.)
---
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T22:24:17" | "2023-08-27T07:42:03" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
<!-- /area samples -->
<!-- /area components -->
### What feature would you like to see?
Comprehensive test support for [Custom Container Components](https://www.kubeflow.org/docs/components/pipelines/v2/author-a-pipeline/components/#3-custom-container-components). Specifically, testing the behavior when you run the `kfp component build` command.
This [code](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/cli/component.py) handles `kfp component build`. Some existing relevant tests are [here](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/cli/component_test.py).
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T22:17:59" | "2023-08-27T07:42:05" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
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/area sdk
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### What feature would you like to see?
Provide better error messages (i.e., not an "internal" error) to users, possibly with correct suggestions. Specifically, it can be hard to known how users should change their code in response to unknown/incorrect component interface annotations discovered in [kfp.components.component_factory.extract_component_interface](https://github.com/kubeflow/pipelines/blob/master/sdk/python/kfp/components/component_factory.py#L146).
---
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T22:13:47" | "2023-08-27T07:42:07" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
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Per [Python docs](https://docs.python.org/3/howto/logging.html#when-to-use-logging), use `warnings.warn` when warning is avoidable via user code changes. There are some instances of `warnings.warn` that should probably be `logging.warning`.
This work item is ensure the warnings in the KFP SDK are used correctly.
---
<!-- Don't delete message below to encourage users to support your feature request! -->
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"This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions."
] | "2023-01-17T22:08:05" | "2023-08-27T07:42:08" | null | MEMBER | null | ### Feature Area
<!-- Uncomment the labels below which are relevant to this feature: -->
<!-- /area frontend -->
<!-- /area backend -->
/area sdk
<!-- /area samples -->
<!-- /area components -->
### What feature would you like to see?
Support Python 3.11.
Unit tests for 3.11 are set up, but [failing](https://oss.gprow.dev/job-history/gs/oss-prow/pr-logs/directory/kubeflow-pipelines-sdk-python311). There may be code changes necessary to make the SDK work on 3.11. Tests can be [run](https://github.com/kubeflow/pipelines/blob/master/sdk/CONTRIBUTING.md#testing) locally in a 3.11 environment to reproduce failures.
In the PR that implements 3.11 support, we should upper bound the Python version in [setup.py](https://github.com/kubeflow/pipelines/blob/master/sdk/python/setup.py#L96).
Once tests are passing in CI/CD, we should remove the `optional` and `skip_report` fields in the [presubmit configuration](https://github.com/GoogleCloudPlatform/oss-test-infra/blob/c3fd9605af955e34c00647d1ef1f8e78c8a922aa/prow/prowjobs/kubeflow/pipelines/kubeflow-pipelines-presubmits.yaml#L117-L118).
---
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