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--- |
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language: |
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- en |
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bigbio_language: |
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- English |
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license: unknown |
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multilinguality: monolingual |
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bigbio_license_shortname: UNKNOWN |
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pretty_name: GNormPlus |
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homepage: https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/gnormplus/ |
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bigbio_pubmed: True |
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bigbio_public: True |
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bigbio_tasks: |
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- NAMED_ENTITY_RECOGNITION |
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- NAMED_ENTITY_DISAMBIGUATION |
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--- |
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# Dataset Card for GNormPlus |
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## Dataset Description |
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- **Homepage:** https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/gnormplus/ |
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- **Pubmed:** True |
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- **Public:** True |
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- **Tasks:** NER,NED |
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We re-annotated two existing gene corpora. The BioCreative II GN corpus is a widely used data set for benchmarking GN |
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tools and includes document-level annotations for a total of 543 articles (281 in its training set; and 262 in test). |
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The Citation GIA Test Collection was recently created for gene indexing at the NLM and includes 151 PubMed abstracts |
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with both mention-level and document-level annotations. They are selected because both have a focus on human genes. |
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For both corpora, we added annotations of gene families and protein domains. For the BioCreative GN corpus, we also |
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added mention-level gene annotations. As a result, in our new corpus, there are a total of 694 PubMed articles. |
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PubTator was used as our annotation tool along with BioC formats. |
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## Citation Information |
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``` |
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@Article{Wei2015, |
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author={Wei, Chih-Hsuan and Kao, Hung-Yu and Lu, Zhiyong}, |
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title={GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains}, |
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journal={BioMed Research International}, |
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year={2015}, |
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month={Aug}, |
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day={25}, |
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publisher={Hindawi Publishing Corporation}, |
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volume={2015}, |
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pages={918710}, |
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issn={2314-6133}, |
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doi={10.1155/2015/918710}, |
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url={https://doi.org/10.1155/2015/918710} |
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} |
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``` |
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