metadata

language:
  - en
bigbio_language:
  - English
license: cc-by-2.0
multilinguality: monolingual
bigbio_license_shortname: CC_BY_2p0
pretty_name: BioInfer
homepage: https://github.com/metalrt/ppi-dataset
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
  - RELATION_EXTRACTION
  - NAMED_ENTITY_RECOGNITION

Dataset Card for BioInfer

Dataset Description

Homepage: https://github.com/metalrt/ppi-dataset
Pubmed: True
Public: True
Tasks: RE,NER

A corpus targeted at protein, gene, and RNA relationships which serves as a resource for the development of information extraction systems and their components such as parsers and domain analyzers. Currently, the corpus contains 1100 sentences from abstracts of biomedical research articles annotated for relationships, named entities, as well as syntactic dependencies.

Citation Information

@article{pyysalo2007bioinfer,
  title        = {BioInfer: a corpus for information extraction in the biomedical domain},
  author       = {
    Pyysalo, Sampo and Ginter, Filip and Heimonen, Juho and Bj{"o}rne, Jari
    and Boberg, Jorma and J{"a}rvinen, Jouni and Salakoski, Tapio
  },
  year         = 2007,
  journal      = {BMC bioinformatics},
  publisher    = {BioMed Central},
  volume       = 8,
  number       = 1,
  pages        = {1--24}
}