Datasets:
Add CodonTranslator dataset audit files
Browse files- _work/cluster_split.parquet +3 -0
- _work/final_representative_counts.json +14 -0
- _work/seq_cluster.parquet +3 -0
- _work/seq_split.parquet +3 -0
- _work/split_report.json +40 -0
_work/cluster_split.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:706b8d015867901c378925b98500906e5b7d19486bd6fce57e17cd86d161cef3
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size 715846397
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_work/final_representative_counts.json
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{
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"representatives_only": true,
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"source": "data_v3_rebuild/train|val|test parquet outputs",
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"split_rows": {
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"test": 331455,
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"train": 36888301,
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"val": 373637
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},
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"split_unique_seq_ids": {
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"test": 331455,
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"train": 36888301,
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"val": 373637
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}
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}
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_work/seq_cluster.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:1b79f6458acfdab33daee06ff33e6382a8b9bdcd2bf035a830bcacf2dd1ff413
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size 3600644384
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_work/seq_split.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:ad10f205750bb27b2c4f4e9a9acd1cde114063c4b4a4c66ec6bdc6caf8c05840
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size 1897554619
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_work/split_report.json
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{
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"audit": {
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"dropped_rows_from_exact_protein_train_overlap": 45,
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"dropped_seen_rows_from_exact_protein_holdout_overlap": 481675,
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"dropped_seen_rows_from_mixed_test_clusters": 5149780,
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"dropped_seen_seqids_from_mixed_test_clusters": 4961925,
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"exact_protein_cross_holdout_seen_groups": 67753,
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"mixed_test_clusters": 132244,
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"same_protein_cross_holdout_species_exact_matches": 67753,
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"same_protein_multi_species_exact_matches": 2194978
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},
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"parameters": {
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"heldout_test_glob": "data_v2/test/*.parquet",
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"input_glob": "data_v2/*/*.parquet",
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"limit_files": 0,
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"seq_cluster_parquet": "data_v3_rebuild/_work/seq_cluster.parquet",
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"seq_space": "protein",
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"seq_split_parquet": "data_v3_rebuild/_work/seq_split.parquet",
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"species_key_mode": "binomial"
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},
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"split_rows": {
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"drop": 5156714,
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"test": 672515,
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"train": 92214972,
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"val": 931418
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},
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"split_seq_ids": {
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"drop": 4968482,
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"test": 665012,
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"train": 89082794,
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"val": 900075
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},
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"verification": {
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"clusters_spanning_splits_excluding_drop": 0,
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"exact_protein_overlap_train_test": 0,
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"exact_protein_overlap_train_val": 0,
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"test_rows_with_seen_species": 0,
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"val_species_not_in_train": 0
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}
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}
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