PROTAC-Bench commited on
Commit
0669fd3
·
verified ·
1 Parent(s): afe7ce5

Update dataset card to use current project name

Browse files
Files changed (1) hide show
  1. README.md +4 -4
README.md CHANGED
@@ -8,16 +8,16 @@ tags:
8
  - protac
9
  - protein-degradation
10
  - benchmark
11
- pretty_name: PROTAC-PLM-Bench
12
  size_categories:
13
  - 10K<n<100K
14
  ---
15
 
16
- # PROTAC-PLM-Bench: A Cold-Target Benchmark for PROTAC Degradation Prediction
17
 
18
  ## Dataset Description
19
 
20
- PROTAC-PLM-Bench is a merged PROTAC degradation dataset containing **10,748 entries** across **173 protein targets** (9,359 unique SMILES). It combines data from PROTAC-DB 3.0, Ribes et al. (2024), and DegradeMaster with deduplication and canonical SMILES standardization. Each entry has a binary activity label (active: DC50 < 1 μM OR Dmax > 50%) along with target UniProt ID and E3 ligase type (VHL/CRBN/Other). The dataset includes pre-computed 7-property ADMET cascade scores for all entries.
21
 
22
  ## Evaluation Protocol
23
 
@@ -97,7 +97,7 @@ This dataset contains no personal or sensitive information. All entries are chem
97
 
98
  ```bibtex
99
  @inproceedings{protacbench2025,
100
- title={PROTAC-PLM-Bench: A Cold-Target Benchmark for PROTAC Degradation Prediction},
101
  author={[Authors TBD]},
102
  booktitle={NeurIPS Datasets and Benchmarks Track},
103
  year={2025}
 
8
  - protac
9
  - protein-degradation
10
  - benchmark
11
+ pretty_name: PROTAC-Bench
12
  size_categories:
13
  - 10K<n<100K
14
  ---
15
 
16
+ # PROTAC-Bench: A Cold-Target Benchmark for PROTAC Degradation Prediction
17
 
18
  ## Dataset Description
19
 
20
+ PROTAC-Bench is a merged PROTAC degradation dataset containing **10,748 entries** across **173 protein targets** (9,359 unique SMILES). It combines data from PROTAC-DB 3.0, Ribes et al. (2024), and DegradeMaster with deduplication and canonical SMILES standardization. Each entry has a binary activity label (active: DC50 < 1 μM OR Dmax > 50%) along with target UniProt ID and E3 ligase type (VHL/CRBN/Other). The dataset includes pre-computed 7-property ADMET cascade scores for all entries.
21
 
22
  ## Evaluation Protocol
23
 
 
97
 
98
  ```bibtex
99
  @inproceedings{protacbench2025,
100
+ title={PROTAC-Bench: A Cold-Target Benchmark for PROTAC Degradation Prediction},
101
  author={[Authors TBD]},
102
  booktitle={NeurIPS Datasets and Benchmarks Track},
103
  year={2025}