PMCID
string | Sentences
string | ner
list |
|---|---|---|
PMC9429973
|
Within the data, deregulation of several KDM-related ncRNAs was observed, e.g., CTC-482H14.5 (antisense RNA to KDM4B gene, downregulated in AZA responders), hsa_circ_0003889 (circRNA processed from KDM1A, downregulated in AZA responders), and hsa_circ_0001580 (circRNA processed from KDM1B, upregulated in AZA responders).
|
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PMC11047729
|
Telomerase, in particular, has been extensively studied in various cancer types, including leukemias, due to its involvement in carcinogenesis.
|
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PMC10329237
|
The BLM has been used in many studies conducted on the cellular and molecular mechanisms involved in the pathogenesis of IPF and the identification of novel therapies for this disease (19).
|
[
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}
] |
PMC4395774
|
Antigen-specific cytolysis of targets was detected from gene corrected, CTL expressing WT PRF but not CTL expressing PRFmut (Figure 5b).
|
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}
] |
PMC11352311
|
Molecular docking and affinity calculations between esculin and the proteins were then performed using AutoDock 1.2.0 Vina.
|
[
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"O",
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}
] |
PMC2944824
|
Western blots were visualized with the Odyssey.
|
[
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"O",
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}
] |
PMC10976516
|
TME changed with increased systemic NK cells and augmented IL-α, IL1-β, and GCSF.Ahmed et al.Recombinant GLV-1h107, GLV-1h108 GLV-1h109 contains the GLAF-1 gene under the control of the VV SE, SEL, and SL promoters, respectively.
|
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] |
PMC10578720
|
In summary, these findings suggest that the activation of the TCA cycle in vivo plays a role in preventing the HBV particles from inducing M2-like polarization of macrophages.
|
[
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}
] |
PMC11679326
|
C1qDC proteins are unexpectedly widespread molecules among many invertebrates, despite their lack of a classic complement system.
|
[
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] |
PMC9429973
|
All pts received 8 intrathecal doses of MTX alternating with ara-C and mediastinal radiation was considered in pts with balky mediastinal disease.
|
[
{
"tags": [
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"O",
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"O",
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"O",
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] |
PMC11361748
|
Data are shown as mean ± SEM.
|
[
{
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"O",
"O",
"O",
"O",
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"O"
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]
}
] |
PMC9429973
|
27.0%(17/63)occurred large masses(≥7.5cm).
|
[
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"O",
"O",
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"large",
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"cm",
")",
"."
]
}
] |
PMC11119602
|
They were collected by trypsinisation and grew similarly to non-resistant cells, but were less sensitive to the cisplatin; they became resistant (Figure 1B,C).
|
[
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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]
}
] |
PMC11666785
|
It may be noted that, low frequencies are in the centre of FFT image and high frequencies away from the origin.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"origin",
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]
}
] |
PMC4112127
|
The medium containing 5-Aza-dC or DMSO was changed every 24 h. The dose and timing of 5-Aza-dC was based on prior optimization tests .
|
[
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"tags": [
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"O",
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"O",
"O",
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"tests",
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]
}
] |
PMC9429973
|
Patients with bulky disease, nonGCB subtype, and double expressors experienced significantly shorter PFS (p=0.03, P=0.043, and p=0.025, respectively), but these features did not impact OS.
|
[
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]
}
] |
PMC10547921
|
In contrast, tubulin polymerization inhibitors, such as maytansine compounds DM1 and DM4, block the polymerization of tubulin dimers by inhibiting the formation of mature microtubules.
|
[
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"of",
"mature",
"microtubules",
"."
]
}
] |
PMC9621239
|
Genetic distance (D), number of synonymous substitutions per synonymous site (dS) and number of non-synonymous substitutions per non-synonymous site (dN) were calculated using MEGA 7.0 to quantify the diversity of HBV X QS.
|
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"X",
"QS",
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]
}
] |
PMC9429973
|
Neither did single inhibition of MCT1 or MCT4.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"Neither",
"did",
"single",
"inhibition",
"of",
"MCT1",
"or",
"MCT4",
"."
]
}
] |
PMC11640555
|
Based on studies already conducted in in vitro models , and to mimic the increased BBB permeability caused by GBM, cells were stimulated with LPS, disrupting the integrity of the BBB and inducing inflammation.
|
[
{
"tags": [
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"integrity",
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"the",
"BBB",
"and",
"inducing",
"inflammation",
"."
]
}
] |
PMC11543885
|
Z.L. was supported by the China Scholarship Council.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"Z.L.",
"was",
"supported",
"by",
"the",
"China",
"Scholarship",
"Council",
"."
]
}
] |
PMC11352666
|
TC106 EWS cells were obtained from T. Triche (Children’s Hospital Los Angeles, Los Angeles, CA, USA).
|
[
{
"tags": [
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"EWS",
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"Los",
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",",
"Los",
"Angeles",
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"CA",
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"USA",
")",
"."
]
}
] |
PMC10798140
|
Additionally, clinical trials are currently being conducted on the quinoline derivative pelitinib (EKB-569) for the treatment of colorectal and lung cancer.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"for",
"the",
"treatment",
"of",
"colorectal",
"and",
"lung",
"cancer",
"."
]
}
] |
PMC11731161
|
Generally, bone marrow mononuclear cells were separated utilizing Ficoll density gradient sedimentation, followed by the isolation of CD138 cells through microbead separation (Miltenyi, Germany).
|
[
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"tags": [
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"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"microbead",
"separation",
"(",
"Miltenyi",
",",
"Germany",
")",
"."
]
}
] |
PMC11706776
|
Comparison of SKCa (KCNN1, KCNN2, and KCNN3) gene expression in patients suffering from ES was performed by a Brown–Forsythe and Welch ANOVA and a Games–Howell multiple comparisons tests.
|
[
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"O",
"O",
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"O",
"O",
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}
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PMC9429973
|
From cycle 2 onwards, the most frequent AEs included blurred vision (all grade 40%, Gr 3/4 20%), peripheral neuropathy (all grade 30%, Gr 3/4 10%), upper respiratory tract infection (all grade 30%, Gr 3/4 20%), dry eyes (all grade 20%, Gr 3/4 0%), neutropenia (all grade 20%, Gr 3/4 10%) and nausea (all grade 20%, Gr 3/4 0%).
|
[
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"O",
"O",
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] |
PMC11577421
|
For example, we recently showed that the glycocalyx of Chinese hamster ovary (CHO) cells can function as a charge-based barrier against the internalization of anionic polystyrene NPs.
|
[
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"tags": [
"O",
"O",
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"of",
"anionic",
"polystyrene",
"NPs",
"."
]
}
] |
PMC10877303
|
Therefore, the order of the MERS-CoV genome is 5′ UTR-ORF1ab (Open reading frames)-S-ORF3-ORF4a-ORF4b-E-M-N-3′ UTR-poly(A) tail .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
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"frames)-S-ORF3-ORF4a-ORF4b-E-M-N-3′",
"UTR-poly(A",
")",
"tail",
"."
]
}
] |
PMC6600592
|
A series of oxime and oxime ether derivatives of (E)-4-(alkyl-imino)-4-(4-substitute-phenyl) cyclohexylbutanoate were designed for anti-HBV agents according molecular docking conclusions.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"tokens": [
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"and",
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"cyclohexylbutanoate",
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"for",
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"agents",
"according",
"molecular",
"docking",
"conclusions",
"."
]
}
] |
PMC11745600
|
In contrast, low testosterone is known as a risk factor for diabetes.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O"
],
"tokens": [
"In",
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"low",
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"known",
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"a",
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"factor",
"for",
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"."
]
}
] |
PMC11635087
|
Nu and Mt show nuclei and mitochondria, respectively.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"Nu",
"and",
"Mt",
"show",
"nuclei",
"and",
"mitochondria",
",",
"respectively",
"."
]
}
] |
PMC11351758
|
The cells were then cleaned with HEPES and incubated with MTT solutions for 40 min at 37 °C.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"solutions",
"for",
"40",
"min",
"at",
"37",
"°",
"C",
"."
]
}
] |
PMC11682224
|
Data are expressed as mean ± standard deviation; N = 3; **P < 0.01.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"N",
"=",
"3",
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"*",
"*",
"P",
"<",
"0.01",
"."
]
}
] |
PMC11334037
|
IGF2 was highly expressed in OE-IGF2-transfected cells compared with OE-NC cells, while IGF2 expression was low in sh-IGF2-transfected cells (P < 0.001).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"while",
"IGF2",
"expression",
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"low",
"in",
"sh-IGF2-transfected",
"cells",
"(",
"P",
"<",
"0.001",
")",
"."
]
}
] |
PMC9429973
|
The DADA2 tool was used to classify sequences into appropriate taxonomic groups.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"DADA2",
"tool",
"was",
"used",
"to",
"classify",
"sequences",
"into",
"appropriate",
"taxonomic",
"groups",
"."
]
}
] |
PMC9429973
|
After confirmation of relapse, patients may be enrolled in one of the open sub-trials, provided the detailed eligibility criteria are met.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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",",
"provided",
"the",
"detailed",
"eligibility",
"criteria",
"are",
"met",
"."
]
}
] |
PMC11486946
|
Disturbing these processes can affect the signaling activity of the molecule, providing a potential mechanistic target for drug discovery.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"mechanistic",
"target",
"for",
"drug",
"discovery",
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]
}
] |
PMC8540692
|
Briefly, 100,000 cells of A-172 and T98G cell lines, and 150,000 cells of U-138 MG cell line were seeded on 6-well plates and incubated for 24 h. Afterward, the analyzed compounds were added in concentrations based on MTT results, and the cells were further incubated for 48 h. Cells treated with the vehicle (DMSO or PBS) and 100 nM topotecan were used as negative and positive controls, respectively.
|
[
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"O",
"O",
"O",
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"B-CellLine",
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"B-CellLine",
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"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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}
] |
PMC10747139
|
Complex 21 inhibited colony formation and had a potential antimetastatic action, thereby impeding cell migration in the wound-healing experiment.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"in",
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]
}
] |
PMC11489275
|
Table 1Clinical characteristics of MDA5 + DM-ILD patients who died within 1 monthVariablesTotal (n = 263)1 month survivor (n = 185)1 month non-survivor (n = 78)P valueDemographic dataAge, median, years53.0[48.0,62.0]51.0[46.0,58.0]57.0[51.0,63.0] < 0.001Male, n (%)176(66.9)127(68.6)49(62.8)0.359Smoke, n (%)38(14.4)21(11.4)17(21.8)0.028Symptoms and disease statusFever, n (%)138(52.5)82(44.3)56(71.8) < 0.001Duration, median, month2.0[1.0,3.0]2.0[1.0,4.0]1.0[0.7,2.0] < 0.001RP-ILD, n (%)121(46.0)54(29.2)67(85.9) < 0.001Cutaneous featuresMechanic hand,n(%)83(31.6)54(29.2)29(37.2)0.203Heliotrope rash, n (%)114(43.3)87(47.0)27(34.6)0.064Gottron’s sign, n (%)165(62.7)118(63.8)47(60.3)0.589Shawl sign, n (%)32(12.2)26(14.1)6(7.7)0.149Periungual erythema, n (%)33(12.5)27(14.6)6(7.7)0.123Raynaud phenomenon, n (%)14(5.3)10(5.4)4(5.1)0.927Skin ulcers, n (%)35(13.3)26(14.1)9(11.5)0.583V sign, n (%)74(28.1)58(31.4)16(20.5)0.074Musculoskeletal featuresArthritis, n (%)93(35.4)76(41.1)17(21.8)0.003Muscle weakness, n (%)70(26.6)56(30.3)14(17.9)0.039Laboratory findingsLymphocyte, median,10^9/L0.7[0.5,1.1]0.8[0.5,1.2]0.6[0.5,0.9]0.005Lymphocyte class, n (%)1(≥ 1.10 × 10^9/L)67(25.5)55(29.7)12(15.4)0.0462(0.55–1.10 × 10^9/L)126(47.9)85(46.0)41(52.6)3(< 0.55 × 10^9/L)70(26.6)45(24.3)25(32.0)ANA, positive,n(%)110(41.8)79(42.7)31(39.7)0.657RF, positive, n (%)23(8.7)18(9.7)5(6.4)0.384Ro52, positive, n (%)203(77.2)141(76.2)62(79.5)0.564ALB, (mean ± SD), g/L33.0 ± 4.233.9 ± 4.230.9 ± 3.3 < 0.001ALT, median, units/L53.9[30.6,82.7]53.9[29.8,82.7]52.7[33.3,84.6]0.553AST, median, units/L47.3[32.0,73.3]42.9[29.5,69.6]60.9[39.8,80.0]0.002CK, median, units/L55.0[30.0,133.0]56.0[30.0,132.0]51.0[27.0,152.0]0.773LDH, median, units/L378.0[290.0,502.0]343.0[265.0,454.0]466.0[393.0,618.0] < 0.001CRP, median, mg/L6.7[3.2,19.0]5.1[2.7,12.3]19.8[5.0,47.0] < 0.001ESR, median, mm/h39.0[23.0,56.0]33.0[20.0,51.0]44.0[31.0,63.0] < 0.001NLR, median5.9[3.5,10.0]5.0[3.2,8.7]8.7[5.4,13.3] < 0.001WBC, median, 10^9/L5.9[4.3,7.9]5.5[4.2,7.5]6.5[4.8,9.5]0.005 Clinical characteristics of MDA5 + DM-ILD patients who died within 1 month The study analyzed the dynamic changes of peripheral blood lymphocyte count in the 1-month survivor and non-survivor group from the first day to the 14th day after admission and combined the adjacent 2 days into one group, including 7 groups in total.
|
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Table",
"1Clinical",
"characteristics",
"of",
"MDA5",
"+",
"DM-ILD",
"patients",
"who",
"died",
"within",
"1",
"monthVariablesTotal",
"(",
"n",
"=",
"263)1",
"month",
"survivor",
"(",
"n",
"=",
"185)1",
"month",
"non-survivor",
"(",
"n",
"=",
"78)P",
"valueDemographic",
"dataAge",
",",
"median",
",",
"years53.0[48.0,62.0]51.0[46.0,58.0]57.0[51.0,63.0",
"]",
"<",
"0.001Male",
",",
"n",
"(%)176(66.9)127(68.6)49(62.8)0.359Smoke",
",",
"n",
"(%)38(14.4)21(11.4)17(21.8)0.028Symptoms",
"and",
"disease",
"statusFever",
",",
"n",
"(%)138(52.5)82(44.3)56(71.8",
")",
"<",
"0.001Duration",
",",
"median",
",",
"month2.0[1.0,3.0]2.0[1.0,4.0]1.0[0.7,2.0",
"]",
"<",
"0.001RP-ILD",
",",
"n",
"(%)121(46.0)54(29.2)67(85.9",
")",
"<",
"0.001Cutaneous",
"featuresMechanic",
"hand",
",",
"n(%)83(31.6)54(29.2)29(37.2)0.203Heliotrope",
"rash",
",",
"n",
"(%)114(43.3)87(47.0)27(34.6)0.064Gottron",
"’s",
"sign",
",",
"n",
"(%)165(62.7)118(63.8)47(60.3)0.589Shawl",
"sign",
",",
"n",
"(%)32(12.2)26(14.1)6(7.7)0.149Periungual",
"erythema",
",",
"n",
"(%)33(12.5)27(14.6)6(7.7)0.123Raynaud",
"phenomenon",
",",
"n",
"(%)14(5.3)10(5.4)4(5.1)0.927Skin",
"ulcers",
",",
"n",
"(%)35(13.3)26(14.1)9(11.5)0.583V",
"sign",
",",
"n",
"(%)74(28.1)58(31.4)16(20.5)0.074Musculoskeletal",
"featuresArthritis",
",",
"n",
"(%)93(35.4)76(41.1)17(21.8)0.003Muscle",
"weakness",
",",
"n",
"(%)70(26.6)56(30.3)14(17.9)0.039Laboratory",
"findingsLymphocyte",
",",
"median,10",
"^",
"9/L0.7[0.5,1.1]0.8[0.5,1.2]0.6[0.5,0.9]0.005Lymphocyte",
"class",
",",
"n",
"(%)1(≥",
"1.10",
"×",
"10",
"^",
"9/L)67(25.5)55(29.7)12(15.4)0.0462(0.55–1.10",
"×",
"10",
"^",
"9/L)126(47.9)85(46.0)41(52.6)3",
"(",
"<",
"0.55",
"×",
"10",
"^",
"9/L)70(26.6)45(24.3)25(32.0)ANA",
",",
"positive",
",",
"n(%)110(41.8)79(42.7)31(39.7)0.657RF",
",",
"positive",
",",
"n",
"(%)23(8.7)18(9.7)5(6.4)0.384Ro52",
",",
"positive",
",",
"n",
"(%)203(77.2)141(76.2)62(79.5)0.564ALB",
",",
"(",
"mean",
"±",
"SD",
")",
",",
"g/L33.0",
"±",
"4.233.9",
"±",
"4.230.9",
"±",
"3.3",
"<",
"0.001ALT",
",",
"median",
",",
"units/L53.9[30.6,82.7]53.9[29.8,82.7]52.7[33.3,84.6]0.553AST",
",",
"median",
",",
"units/L47.3[32.0,73.3]42.9[29.5,69.6]60.9[39.8,80.0]0.002CK",
",",
"median",
",",
"units/L55.0[30.0,133.0]56.0[30.0,132.0]51.0[27.0,152.0]0.773LDH",
",",
"median",
",",
"units/L378.0[290.0,502.0]343.0[265.0,454.0]466.0[393.0,618.0",
"]",
"<",
"0.001CRP",
",",
"median",
",",
"mg/L6.7[3.2,19.0]5.1[2.7,12.3]19.8[5.0,47.0",
"]",
"<",
"0.001ESR",
",",
"median",
",",
"mm/h39.0[23.0,56.0]33.0[20.0,51.0]44.0[31.0,63.0",
"]",
"<",
"0.001NLR",
",",
"median5.9[3.5,10.0]5.0[3.2,8.7]8.7[5.4,13.3",
"]",
"<",
"0.001WBC",
",",
"median",
",",
"10",
"^",
"9/L5.9[4.3,7.9]5.5[4.2,7.5]6.5[4.8,9.5]0.005",
"Clinical",
"characteristics",
"of",
"MDA5",
"+",
"DM-ILD",
"patients",
"who",
"died",
"within",
"1",
"month",
"The",
"study",
"analyzed",
"the",
"dynamic",
"changes",
"of",
"peripheral",
"blood",
"lymphocyte",
"count",
"in",
"the",
"1-month",
"survivor",
"and",
"non-survivor",
"group",
"from",
"the",
"first",
"day",
"to",
"the",
"14th",
"day",
"after",
"admission",
"and",
"combined",
"the",
"adjacent",
"2",
"days",
"into",
"one",
"group",
",",
"including",
"7",
"groups",
"in",
"total",
"."
]
}
] |
PMC9429973
|
On the other hand, both groups showed an equal need for more information in areas such as psychosocial support and the side effects of treatment.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"On",
"the",
"other",
"hand",
",",
"both",
"groups",
"showed",
"an",
"equal",
"need",
"for",
"more",
"information",
"in",
"areas",
"such",
"as",
"psychosocial",
"support",
"and",
"the",
"side",
"effects",
"of",
"treatment",
"."
]
}
] |
PMC6182045
|
Cell viability was assessed via with trypan blue exclusion and cell counts and viability were monitored using the TC20TM automated cell counter (BioRad, Hercules, CA).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Cell",
"viability",
"was",
"assessed",
"via",
"with",
"trypan",
"blue",
"exclusion",
"and",
"cell",
"counts",
"and",
"viability",
"were",
"monitored",
"using",
"the",
"TC20TM",
"automated",
"cell",
"counter",
"(",
"BioRad",
",",
"Hercules",
",",
"CA",
")",
"."
]
}
] |
PMC11144200
|
It is noteworthy that, in contrast to other control groups, the FC + LPS-RGD-Nb36-DOX group’s ability to kill target cells does not actually diminish considerably as the DOX dose drops.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"It",
"is",
"noteworthy",
"that",
",",
"in",
"contrast",
"to",
"other",
"control",
"groups",
",",
"the",
"FC",
"+",
"LPS-RGD-Nb36-DOX",
"group",
"’s",
"ability",
"to",
"kill",
"target",
"cells",
"does",
"not",
"actually",
"diminish",
"considerably",
"as",
"the",
"DOX",
"dose",
"drops",
"."
]
}
] |
PMC6450504
|
Next, cells were incubated overnight at 4 °C with a 1:20 dilution of primary anti-β-tubulin antibody (mouse monoclonal to β-tubulin, G-8, sc-55529, Santa Cruz Biotechnology, Dallas, TX).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Next",
",",
"cells",
"were",
"incubated",
"overnight",
"at",
"4",
"°",
"C",
"with",
"a",
"1:20",
"dilution",
"of",
"primary",
"anti-β-tubulin",
"antibody",
"(",
"mouse",
"monoclonal",
"to",
"β-tubulin",
",",
"G-8",
",",
"sc-55529",
",",
"Santa",
"Cruz",
"Biotechnology",
",",
"Dallas",
",",
"TX",
")",
"."
]
}
] |
PMC10213179
|
In addition, aptamers are much less immune-stimulating.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"addition",
",",
"aptamers",
"are",
"much",
"less",
"immune-stimulating",
"."
]
}
] |
PMC6133382
|
These studies suggest that the sialic acid–containing hybrid and complex carbohydrates incorporated in normal cell lines in some way interfere with the VRC01 binding site on monomeric gp120.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"These",
"studies",
"suggest",
"that",
"the",
"sialic",
"acid",
"–",
"containing",
"hybrid",
"and",
"complex",
"carbohydrates",
"incorporated",
"in",
"normal",
"cell",
"lines",
"in",
"some",
"way",
"interfere",
"with",
"the",
"VRC01",
"binding",
"site",
"on",
"monomeric",
"gp120",
"."
]
}
] |
PMC9429973
|
Low-SMI was more common in patients with CIRS≥6 (p=0.039).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Low-SMI",
"was",
"more",
"common",
"in",
"patients",
"with",
"CIRS≥6",
"(",
"p=0.039",
")",
"."
]
}
] |
PMC4112127
|
However, survival is substantially better in patients diagnosed with early stage ICC and in those with ECC for whom surgical resection or combined neoadjuvant chemoradiation and liver transplantation are potentially curative [12-15].
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"However",
",",
"survival",
"is",
"substantially",
"better",
"in",
"patients",
"diagnosed",
"with",
"early",
"stage",
"ICC",
"and",
"in",
"those",
"with",
"ECC",
"for",
"whom",
"surgical",
"resection",
"or",
"combined",
"neoadjuvant",
"chemoradiation",
"and",
"liver",
"transplantation",
"are",
"potentially",
"curative",
"[",
"12",
"-",
"15",
"]",
"."
]
}
] |
PMC11310713
|
Our results from hormone measurement in in vitro culture were similar, which means our GTBs act as hormone producers on behalf of the original ovaries.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Our",
"results",
"from",
"hormone",
"measurement",
"in",
"in",
"vitro",
"culture",
"were",
"similar",
",",
"which",
"means",
"our",
"GTBs",
"act",
"as",
"hormone",
"producers",
"on",
"behalf",
"of",
"the",
"original",
"ovaries",
"."
]
}
] |
PMC9429973
|
Corticosteroids were administrated to 81.5% of pts, antiviral agents to 38.3%, IL-6 receptor inhibitor to 11.1%, antiviral monoclonal antibodies to 7.4% and intravenous immunoglobulin to 19.8% of pts.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Corticosteroids",
"were",
"administrated",
"to",
"81.5",
"%",
"of",
"pts",
",",
"antiviral",
"agents",
"to",
"38.3",
"%",
",",
"IL-6",
"receptor",
"inhibitor",
"to",
"11.1",
"%",
",",
"antiviral",
"monoclonal",
"antibodies",
"to",
"7.4",
"%",
"and",
"intravenous",
"immunoglobulin",
"to",
"19.8",
"%",
"of",
"pts",
"."
]
}
] |
PMC11640476
|
The complete medium was used as a control (resazurin treatment = 0).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"complete",
"medium",
"was",
"used",
"as",
"a",
"control",
"(",
"resazurin",
"treatment",
"=",
"0",
")",
"."
]
}
] |
PMC10024132
|
The cells were then stained with fluorochrome-labeled anti-Vδ2 and anti-Vγ9 mAbs and subjected to flow cytometry analysis in order to identify γ9δ2 T cells and evaluate their purity; anti-CD27 and anti-CD45 mAbs were used to assess the differentiation state.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"cells",
"were",
"then",
"stained",
"with",
"fluorochrome-labeled",
"anti-Vδ2",
"and",
"anti-Vγ9",
"mAbs",
"and",
"subjected",
"to",
"flow",
"cytometry",
"analysis",
"in",
"order",
"to",
"identify",
"γ9δ2",
"T",
"cells",
"and",
"evaluate",
"their",
"purity",
";",
"anti-CD27",
"and",
"anti-CD45",
"mAbs",
"were",
"used",
"to",
"assess",
"the",
"differentiation",
"state",
"."
]
}
] |
PMC7039683
|
Functional SNPs that lie in non-coding DNA may alter the activity of tissue-specific enhancers.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Functional",
"SNPs",
"that",
"lie",
"in",
"non-coding",
"DNA",
"may",
"alter",
"the",
"activity",
"of",
"tissue-specific",
"enhancers",
"."
]
}
] |
PMC11772585
|
β-Tubulin was used for the normalization control.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"β-Tubulin",
"was",
"used",
"for",
"the",
"normalization",
"control",
"."
]
}
] |
PMC11607638
|
The number of mosquitoes having completed a full blood meal was recorded every 10 min until all mosquitoes had done so.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"number",
"of",
"mosquitoes",
"having",
"completed",
"a",
"full",
"blood",
"meal",
"was",
"recorded",
"every",
"10",
"min",
"until",
"all",
"mosquitoes",
"had",
"done",
"so",
"."
]
}
] |
PMC11459296
|
PB-MNC humanization, although faster, is associated with high levels of graft-versus-host disease (GvHD) and associated mortality, and often lacks diverse lymphoid–myeloid representation.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"PB-MNC",
"humanization",
",",
"although",
"faster",
",",
"is",
"associated",
"with",
"high",
"levels",
"of",
"graft-versus-host",
"disease",
"(",
"GvHD",
")",
"and",
"associated",
"mortality",
",",
"and",
"often",
"lacks",
"diverse",
"lymphoid",
"–",
"myeloid",
"representation",
"."
]
}
] |
PMC11186948
|
Total RNA was purified and precipitated with chloroform and isopropanol respectively, and RNA pellets were washed two times with 75% ethanol.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Total",
"RNA",
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"purified",
"and",
"precipitated",
"with",
"chloroform",
"and",
"isopropanol",
"respectively",
",",
"and",
"RNA",
"pellets",
"were",
"washed",
"two",
"times",
"with",
"75",
"%",
"ethanol",
"."
]
}
] |
PMC11665584
|
T cell (Icos, St6galnca3), NK cell (Trdc, Xcl1), Macrophage 1 (Ccl8, Cbr2), and Dendritic 1–3 (H2-Ab1, Tmem176b; Cacnb3, Ccl22; Cxcl10, Ifit1, respectively) proportionally decreased while Neutrophil 1 & 2 (Retnlg, G0s2; S100a8, Ccl4, respectively) increased (Figure 7C and Supplemental Figure 13B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"NK",
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"Xcl1",
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",",
"Macrophage",
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"(",
"Ccl8",
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"Cbr2",
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",",
"and",
"Dendritic",
"1–3",
"(",
"H2-Ab1",
",",
"Tmem176b",
";",
"Cacnb3",
",",
"Ccl22",
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"Cxcl10",
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"Ifit1",
",",
"respectively",
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"proportionally",
"decreased",
"while",
"Neutrophil",
"1",
"&",
"2",
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"Retnlg",
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"G0s2",
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"S100a8",
",",
"Ccl4",
",",
"respectively",
")",
"increased",
"(",
"Figure",
"7C",
"and",
"Supplemental",
"Figure",
"13B",
")",
"."
]
}
] |
PMC9429973
|
CMV disease had impact on survival (median OS 6 months vs 40 if no disease; p-value 0.005/HR 0.36 (CI 0.17-0.76)).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"CMV",
"disease",
"had",
"impact",
"on",
"survival",
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"median",
"OS",
"6",
"months",
"vs",
"40",
"if",
"no",
"disease",
";",
"p-value",
"0.005/HR",
"0.36",
"(",
"CI",
"0.17",
"-",
"0.76",
")",
")",
"."
]
}
] |
PMC11721277
|
Methyl alcohol for HPLC “Fisher Chemical”, Taiwan (Cat No. 1923759) was used as a wash solution for the autosampler.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Methyl",
"alcohol",
"for",
"HPLC",
"“",
"Fisher",
"Chemical",
"”",
",",
"Taiwan",
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"Cat",
"No.",
"1923759",
")",
"was",
"used",
"as",
"a",
"wash",
"solution",
"for",
"the",
"autosampler",
"."
]
}
] |
PMC7582629
|
Therefore, polarization-sensitive digital holographic imaging (PSDHI) combined with RS can be used to correlate information on morphology, birefringence and biochemical composition for a complete analysis of the cell sample.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Therefore",
",",
"polarization-sensitive",
"digital",
"holographic",
"imaging",
"(",
"PSDHI",
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"combined",
"with",
"RS",
"can",
"be",
"used",
"to",
"correlate",
"information",
"on",
"morphology",
",",
"birefringence",
"and",
"biochemical",
"composition",
"for",
"a",
"complete",
"analysis",
"of",
"the",
"cell",
"sample",
"."
]
}
] |
PMC9429973
|
Most responders achieved durable long-term hematologic improvement, and the rate of clonal evolution was similar to that seen in our SAA patients treated with rabbit ATG.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Most",
"responders",
"achieved",
"durable",
"long-term",
"hematologic",
"improvement",
",",
"and",
"the",
"rate",
"of",
"clonal",
"evolution",
"was",
"similar",
"to",
"that",
"seen",
"in",
"our",
"SAA",
"patients",
"treated",
"with",
"rabbit",
"ATG",
"."
]
}
] |
PMC9429973
|
The median sample tumor mutational burden (TMB) were 2-hit in treatment-naïve CLL/SLL and 3-hit in RS DLBCL.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"median",
"sample",
"tumor",
"mutational",
"burden",
"(",
"TMB",
")",
"were",
"2-hit",
"in",
"treatment-naïve",
"CLL/SLL",
"and",
"3-hit",
"in",
"RS",
"DLBCL",
"."
]
}
] |
PMC9429973
|
Recurring results in any 90-day period were averaged.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Recurring",
"results",
"in",
"any",
"90-day",
"period",
"were",
"averaged",
"."
]
}
] |
PMC6133382
|
Colonies selected after MGAT1 gene inactivation were transiently transfected with a gene encoding A244-rgp120.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Colonies",
"selected",
"after",
"MGAT1",
"gene",
"inactivation",
"were",
"transiently",
"transfected",
"with",
"a",
"gene",
"encoding",
"A244-rgp120",
"."
]
}
] |
PMC11794588
|
These plates were incubated in a CO2 incubator for 3.5 h at 37 °C.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"These",
"plates",
"were",
"incubated",
"in",
"a",
"CO2",
"incubator",
"for",
"3.5",
"h",
"at",
"37",
"°",
"C",
"."
]
}
] |
PMC7039683
|
Much of this potentially faint conservation overlies the elements conserved in the mammalian enhancer sequences (Supplementary file 2b).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Much",
"of",
"this",
"potentially",
"faint",
"conservation",
"overlies",
"the",
"elements",
"conserved",
"in",
"the",
"mammalian",
"enhancer",
"sequences",
"(",
"Supplementary",
"file",
"2b",
")",
"."
]
}
] |
PMC11413393
|
Further investigation of PRMT1 sensitivity in ccRCC subtypes is warranted and would help facilitate a potential molecular-based stratification for drug responses.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Further",
"investigation",
"of",
"PRMT1",
"sensitivity",
"in",
"ccRCC",
"subtypes",
"is",
"warranted",
"and",
"would",
"help",
"facilitate",
"a",
"potential",
"molecular-based",
"stratification",
"for",
"drug",
"responses",
"."
]
}
] |
PMC11144200
|
Lastly, on day 28, ELISA was used to determine the serum levels of IL-2 and IFN-γ.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Lastly",
",",
"on",
"day",
"28",
",",
"ELISA",
"was",
"used",
"to",
"determine",
"the",
"serum",
"levels",
"of",
"IL-2",
"and",
"IFN-γ",
"."
]
}
] |
PMC11790971
|
The mean total photon counts per cell is 3.17 × 10 (Fig. S11b).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"mean",
"total",
"photon",
"counts",
"per",
"cell",
"is",
"3.17",
"×",
"10",
"(",
"Fig.",
"S11b",
")",
"."
]
}
] |
PMC9429973
|
No treatment-related deaths occurred.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"No",
"treatment-related",
"deaths",
"occurred",
"."
]
}
] |
PMC9429973
|
Aims: The aim of this study is to clarify the role of selected ABC transporters in reduced sensitivity to chemotherapy in AML.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Aims",
":",
"The",
"aim",
"of",
"this",
"study",
"is",
"to",
"clarify",
"the",
"role",
"of",
"selected",
"ABC",
"transporters",
"in",
"reduced",
"sensitivity",
"to",
"chemotherapy",
"in",
"AML",
"."
]
}
] |
PMC9952933
|
At least three independent experiments were performed.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"At",
"least",
"three",
"independent",
"experiments",
"were",
"performed",
"."
]
}
] |
PMC10926885
|
Transfection was performed using Lipofectamine 2000 according to the manufacturer's protocol.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Transfection",
"was",
"performed",
"using",
"Lipofectamine",
"2000",
"according",
"to",
"the",
"manufacturer",
"'s",
"protocol",
"."
]
}
] |
PMC10932641
|
In the cell scratch test, compared with that of the blank control group, the migration distance in the negative control group was not statistically different at 24 and 48 h (P>0.05); compared with that of the negative control group, the migration distance of the siGPRC5D-AS1 group at 24 and 48 h was significantly longer (P<0.05); and compared with that of the negative control group, the oeGPRC5D-AS1 group had significantly shorter migration distances at 24 and 48 h (P<0.05) (Figure 7).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"the",
"cell",
"scratch",
"test",
",",
"compared",
"with",
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"group",
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"distance",
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"48",
"h",
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"that",
"of",
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"negative",
"control",
"group",
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"the",
"migration",
"distance",
"of",
"the",
"siGPRC5D-AS1",
"group",
"at",
"24",
"and",
"48",
"h",
"was",
"significantly",
"longer",
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"P<0.05",
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";",
"and",
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"with",
"that",
"of",
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"control",
"group",
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"the",
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"distances",
"at",
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"and",
"48",
"h",
"(",
"P<0.05",
")",
"(",
"Figure",
"7",
")",
"."
]
}
] |
PMC8978939
|
Our work reinforces the importance of studying specific variants to identify their biological impact.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Our",
"work",
"reinforces",
"the",
"importance",
"of",
"studying",
"specific",
"variants",
"to",
"identify",
"their",
"biological",
"impact",
"."
]
}
] |
PMC7338939
|
Moreover, pre-treated cells with DAPT decreased the sphere number in sphere formation assay in passage 1, but the number and size of spheres significantly increased in the second sphere passages (Figure 2B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Moreover",
",",
"pre-treated",
"cells",
"with",
"DAPT",
"decreased",
"the",
"sphere",
"number",
"in",
"sphere",
"formation",
"assay",
"in",
"passage",
"1",
",",
"but",
"the",
"number",
"and",
"size",
"of",
"spheres",
"significantly",
"increased",
"in",
"the",
"second",
"sphere",
"passages",
"(",
"Figure",
"2B",
")",
"."
]
}
] |
PMC11185260
|
Athymic mice with intracranial BT-12 tumor xenografts were randomized to therapy with scL-SMARCB1 and/or radiation therapy. (
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Athymic",
"mice",
"with",
"intracranial",
"BT-12",
"tumor",
"xenografts",
"were",
"randomized",
"to",
"therapy",
"with",
"scL-SMARCB1",
"and/or",
"radiation",
"therapy",
".",
"("
]
}
] |
PMC11264242
|
Similarly, addition of FK228 induced FYN transcription and protein expression in Yamato-SS cells (Supplementary Figure S10).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Similarly",
",",
"addition",
"of",
"FK228",
"induced",
"FYN",
"transcription",
"and",
"protein",
"expression",
"in",
"Yamato-SS",
"cells",
"(",
"Supplementary",
"Figure",
"S10",
")",
"."
]
}
] |
PMC11757131
|
A BCA protein concentration assay kit was used to determine the cellular protein concentration following the manufacturer’s instructions.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"BCA",
"protein",
"concentration",
"assay",
"kit",
"was",
"used",
"to",
"determine",
"the",
"cellular",
"protein",
"concentration",
"following",
"the",
"manufacturer",
"’s",
"instructions",
"."
]
}
] |
PMC10748106
|
It can be observed that the most cytotoxic glycosylated iridoid (Figure S4f) has a higher electrostatic distribution, principally on the region rich in hydroxyls on the cyclopentane, which are excellent acceptors of hydrogen bonds.
|
[
{
"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
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"O",
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"O",
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"O",
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"O",
"O",
"O",
"O",
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"which",
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"excellent",
"acceptors",
"of",
"hydrogen",
"bonds",
"."
]
}
] |
PMC9429973
|
A quality of life study (SF-36), disease severity score index evaluation (GD-DS3) and compilation of side effects are included.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"GD-DS3",
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"and",
"compilation",
"of",
"side",
"effects",
"are",
"included",
"."
]
}
] |
PMC11216402
|
For the GC cell lines, to generate a more compact set of TFBS motifs, we trained each set of positive ATAC distal peaks versus each other (300 pairs of experiments, n = 2000 differentially active sequences in each of the two cell types, median AUROC = 0.922) (Supplemental Fig. S27) and used the 19 most commonly detected motifs as PWMs to extract TF activity (AP-1, RUNX, AP2, NFKB, ZEB (AREB6), NFI, ONECUT, EBOX, EHF, TCF/LEF, TEAD, GRHL, HNF4A, HNF1B, HOXB13, FOX, KLF, SOX, GATA) (Fig. 1E; Supplemental Fig. S28).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"GC",
"cell",
"lines",
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"a",
"more",
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"positive",
"ATAC",
"distal",
"peaks",
"versus",
"each",
"other",
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"300",
"pairs",
"of",
"experiments",
",",
"n",
"=",
"2000",
"differentially",
"active",
"sequences",
"in",
"each",
"of",
"the",
"two",
"cell",
"types",
",",
"median",
"AUROC",
"=",
"0.922",
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"(",
"Supplemental",
"Fig.",
"S27",
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"and",
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"19",
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"AP-1",
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"RUNX",
",",
"AP2",
",",
"NFKB",
",",
"ZEB",
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"AREB6",
")",
",",
"NFI",
",",
"ONECUT",
",",
"EBOX",
",",
"EHF",
",",
"TCF/LEF",
",",
"TEAD",
",",
"GRHL",
",",
"HNF4A",
",",
"HNF1B",
",",
"HOXB13",
",",
"FOX",
",",
"KLF",
",",
"SOX",
",",
"GATA",
")",
"(",
"Fig.",
"1E",
";",
"Supplemental",
"Fig.",
"S28",
")",
"."
]
}
] |
PMC11585565
|
The cells were washed three times with PBS before incubation with a secondary antibody tagged with Alexa-488 (BioLegend, 1:1,000 in blocking buffer) for 30 min.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"cells",
"were",
"washed",
"three",
"times",
"with",
"PBS",
"before",
"incubation",
"with",
"a",
"secondary",
"antibody",
"tagged",
"with",
"Alexa-488",
"(",
"BioLegend",
",",
"1:1,000",
"in",
"blocking",
"buffer",
")",
"for",
"30",
"min",
"."
]
}
] |
PMC10582828
|
The authors declare no conflicts of interest.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"authors",
"declare",
"no",
"conflicts",
"of",
"interest",
"."
]
}
] |
PMC10165258
|
Of interest, synergistic interactions were found more effective when etoposide was applied first.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Of",
"interest",
",",
"synergistic",
"interactions",
"were",
"found",
"more",
"effective",
"when",
"etoposide",
"was",
"applied",
"first",
"."
]
}
] |
PMC11406030
|
Orange/yellow color indicates the co-localization of the LMTK3 antibody and peptide.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Orange/yellow",
"color",
"indicates",
"the",
"co-localization",
"of",
"the",
"LMTK3",
"antibody",
"and",
"peptide",
"."
]
}
] |
PMC11673902
|
Cancer cells undergo significant changes in their mechanical properties due to alterations in the cytoskeleton.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Cancer",
"cells",
"undergo",
"significant",
"changes",
"in",
"their",
"mechanical",
"properties",
"due",
"to",
"alterations",
"in",
"the",
"cytoskeleton",
"."
]
}
] |
PMC11650848
|
However, participants that had the G/G genotype and were in the FA-supplemented group maintained a higher score that aligned with the other genotypes in the study.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"However",
",",
"participants",
"that",
"had",
"the",
"G/G",
"genotype",
"and",
"were",
"in",
"the",
"FA-supplemented",
"group",
"maintained",
"a",
"higher",
"score",
"that",
"aligned",
"with",
"the",
"other",
"genotypes",
"in",
"the",
"study",
"."
]
}
] |
PMC10362265
|
Fig. 3b shows how the structure of this region in the human complexes evolved over 500 ns.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Fig.",
"3b",
"shows",
"how",
"the",
"structure",
"of",
"this",
"region",
"in",
"the",
"human",
"complexes",
"evolved",
"over",
"500",
"ns",
"."
]
}
] |
PMC11656657
|
A Box plot depicting B4GALNT1 expression across cancers and healthy tissues.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"Box",
"plot",
"depicting",
"B4GALNT1",
"expression",
"across",
"cancers",
"and",
"healthy",
"tissues",
"."
]
}
] |
PMC11788920
|
The DNA construct was prepared by annealing the TS and NTS strand in a 1:1 molar ratio (400 nM) at 95°C for 5–10 min, followed by either slow or fast cooling to room temperature.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"DNA",
"construct",
"was",
"prepared",
"by",
"annealing",
"the",
"TS",
"and",
"NTS",
"strand",
"in",
"a",
"1:1",
"molar",
"ratio",
"(",
"400",
"nM",
")",
"at",
"95",
"°",
"C",
"for",
"5–10",
"min",
",",
"followed",
"by",
"either",
"slow",
"or",
"fast",
"cooling",
"to",
"room",
"temperature",
"."
]
}
] |
PMC11788920
|
The fraction of viable cells was reduced to (18 ± 4)% in case of simultaneous RNP2 + RNP3 treatment after 48 h. On the other hand, cell viability was maintained at (79 ± 3)%, which is slightly less than that of the control when RNP1 and RNP2 were introduced together.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"fraction",
"of",
"viable",
"cells",
"was",
"reduced",
"to",
"(",
"18",
"±",
"4)%",
"in",
"case",
"of",
"simultaneous",
"RNP2",
"+",
"RNP3",
"treatment",
"after",
"48",
"h.",
"On",
"the",
"other",
"hand",
",",
"cell",
"viability",
"was",
"maintained",
"at",
"(",
"79",
"±",
"3)%",
",",
"which",
"is",
"slightly",
"less",
"than",
"that",
"of",
"the",
"control",
"when",
"RNP1",
"and",
"RNP2",
"were",
"introduced",
"together",
"."
]
}
] |
PMC11687167
|
SPIRE-1 and SPIRE-2 2.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"SPIRE-1",
"and",
"SPIRE-2",
"2",
"."
]
}
] |
PMC10158546
|
NeuN expression was also detected in ReN lysate at day 0 StdD. To examine the kinetics of ReN cell differentiation over time, we also tracked protein expression through western blotting of neuronal and astrocytic markers in lysate collected at days 0, 7, 14 and 21 post-differentiation (Figure 1f).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"NeuN",
"expression",
"was",
"also",
"detected",
"in",
"ReN",
"lysate",
"at",
"day",
"0",
"StdD.",
"To",
"examine",
"the",
"kinetics",
"of",
"ReN",
"cell",
"differentiation",
"over",
"time",
",",
"we",
"also",
"tracked",
"protein",
"expression",
"through",
"western",
"blotting",
"of",
"neuronal",
"and",
"astrocytic",
"markers",
"in",
"lysate",
"collected",
"at",
"days",
"0",
",",
"7",
",",
"14",
"and",
"21",
"post-differentiation",
"(",
"Figure",
"1f",
")",
"."
]
}
] |
PMC9429973
|
On the contrary, HS showed increased hepcidin, with less marked increased of ERFE (9.9 ng/mL, P=0.02) and EPO (36.4 IU/L, P=0.005).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"On",
"the",
"contrary",
",",
"HS",
"showed",
"increased",
"hepcidin",
",",
"with",
"less",
"marked",
"increased",
"of",
"ERFE",
"(",
"9.9",
"ng/mL",
",",
"P=0.02",
")",
"and",
"EPO",
"(",
"36.4",
"IU/L",
",",
"P=0.005",
")",
"."
]
}
] |
PMC11574029
|
In mammals, there are four Notch receptors and five Notch ligands .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"mammals",
",",
"there",
"are",
"four",
"Notch",
"receptors",
"and",
"five",
"Notch",
"ligands",
"."
]
}
] |
PMC11718031
|
Figure 4A–H shows the lactate and ammonia concentration changes with culture duration for all basal media-feed combinations.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Figure",
"4A",
"–",
"H",
"shows",
"the",
"lactate",
"and",
"ammonia",
"concentration",
"changes",
"with",
"culture",
"duration",
"for",
"all",
"basal",
"media-feed",
"combinations",
"."
]
}
] |
PMC9964635
|
220.1576; found: 220.1574.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"220.1576",
";",
"found",
":",
"220.1574",
"."
]
}
] |
PMC10812665
|
While AA contain 1-2 nitrogen atoms, many of their metabolites do not.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"While",
"AA",
"contain",
"1",
"-",
"2",
"nitrogen",
"atoms",
",",
"many",
"of",
"their",
"metabolites",
"do",
"not",
"."
]
}
] |
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