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license: gpl-3.0 |
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This repository contains the dataset used in our [work](https://github.com/HemaxiN/3DVesselSegmentation). |
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* masks: contains the 2D segmentation masks; |
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* stl: contains the 3D masks obtained using [PolNet](https://github.com/mobernabeu/polnet); |
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* **Dataset 1**: |
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| **Image** | **Size (X×Y×Z)** | **Train/Test** <br> **Split** | |
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| :--------------: | :--------------: | :-----------------------------: | |
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| PBS_ret1 | 5409×2979×31 | Train | |
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| PBS_ret2 | 3375×4599×56 | Test | |
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| PBS_ret3 | 6237×3384×38 | Test | |
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| PBS_ret4 | 5013×2979×43 | Test | |
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| PBS_ret5 | 4838×5561×39 | Test | |
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| PBS_ret6 | 4864×4864×88 | Test | |
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| PBS_ret7 | 6144×8192×20 | Test | |
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| sFLT1_ret1 | 4617×5418×35 | Train | |
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| sFLT1_ret2 | 4365×3978×73 | Test | |
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| sFLT1_ret3 | 4365×3600×66 | Test | |
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| VEGF_ret1 | 2979×4599×42 | Train | |
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| VEGF_ret2 | 5319×4878×61 | Test | |
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| VEGF_ret3 | 5427×4194×46 | Test | |
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| VEGF_ret4 | 5013×4194×38 | Test | |
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| VEGF_ret5 | 4365×3978×40 | Test | |
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| VEGF_ret6 | 4743×4365×61 | Test | |
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| VEGF_ret7 | 4365×4743×42 | Test | |
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| AngII_ret1 | 6273×3780×33 | Train | |
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| AngII_ret2 | 4851×5571×42 | Test | |
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| AngII_ret3 | 4864×3584×48 | Test | |
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| AngII_ret4 | 4864×5120×40 | Test | |
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* **Datasets 2, 3 and 4**: |
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| | **Image** | **Size (X×Y×Z)** | |
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| :------------- | :------------------------------ | :--------------- | |
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| **Dataset 2** | Captopril_ret1 | 4212×5427×35 | |
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| | Captopril_ret2 | 4194×5013×34 | |
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| | Captopril_ret3 | 4599×3789×36 | |
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| | Captopril_ret4 | 3206×3972×37 | |
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| | Captopril_ret5 | 3204×4365×54 | |
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| | Captopril_ret6 | 3600×4365×60 | |
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| | RGDS_ret1 | 3553×4000×67 | |
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| | RGDS_ret2 | 2258×3997×42 | |
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| | RGDS_ret3 | 3555×4428×48 | |
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| **Dataset 3** | FLIJ7_TG_stiching_1 | 4590×2160×27 | |
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| | FLIJ7_TG_stiching_2ndExp_1 | 3384×5427×35 | |
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| | FLIJ8_WT_stiching_2ndExp_1 | 4617×5427×35 | |
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| | FLIJ9_TG_stiching_1 | 2709×5733×41 | |
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| | FLIJ9_TG_stiching_2ndExp_1 | 3402×5445×35 | |
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| | FLIO1a_TG_stiching_2ndExp_2 | 3388×2969×32 | |
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| | FLIO1b_TG_stiching_2ndExp_1 | 3783×3375×43 | |
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| | FLIO4_TG_stiching_2ndExp_1 | 3378×3787×28 | |
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| | FLIO5_TG_stiching_2ndExp_1 | 5004×3798×27 | |
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| | FLIO6_TG_stiching_1 | 4428×2700×40 | |
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| | FLIO6_TG_stiching_2 | 4203×4212×31 | |
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| | FLIO6_TG_stiching_3 | 4608×5022×44 | |
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| | FLIO8_TG_stiching_1 | 5004×3798×38 | |
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| | FLIP1_TG_stiching_1 | 4203×1764×23 | |
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| | FLIP1_TG_stiching_1Exp_1 | 1954×4094×41 | |
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| | FLIP1_TG_stiching_1Exp_2 | 3384×4815×34 | |
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| | FLIP1_TG_stiching_1Exp_3 | 4815×3033×30 | |
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| | FLIP1_TG_stiching_2 | 4608×5022×40 | |
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| | FLIP5_WT_stiching_2ndExp_1 | 2565×4608×30 | |
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| **Dataset 4** | YES_retinas_h_KO4_C1 | 5632×6656×36 | |
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| | YES_retinas_b_WT2_C1 | 4608×4608×24 | |
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| | YES_retinas_a_WT1_C1 | 4608×5632×20 | |
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| | YES_retinas_f_KO2_C1 | 4608×5632×36 | |
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| | YES_retinas_c_WT3_C1 | 4608×5632×24 | |
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| | YES_retinas_g_KO3_C1 | 4608×4608×28 | |
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| | YES_retinas_e_KO1_C1 | 4608×4608×32 | |
