|
--- |
|
license: cc-by-3.0 |
|
language: |
|
- en |
|
size_categories: |
|
- 1M<n<10M |
|
pretty_name: BIOSCAN-5M |
|
--- |
|
# Dataset Card for BIOSCAN-5M |
|
|
|
 |
|
|
|
### Overview |
|
As part of an ongoing worldwide effort to comprehend and monitor insect biodiversity, we present the BIOSCAN-5M Insect dataset to the machine learning community. BIOSCAN-5M is a comprehensive dataset containing multi-modal information for over 5 million insect specimens, |
|
and it significantly expands existing image-based biological datasets by including taxonomic labels, raw nucleotide barcode sequences, assigned barcode index numbers, geographical information, and specimen size. |
|
|
|
Every record has **both image and DNA** data. Each record of the BIOSCAN-5M dataset contains six primary attributes: |
|
|
|
- RGB image |
|
- DNA barcode sequence |
|
- Barcode Index Number (BIN) |
|
- Biological taxonomic classification |
|
- Geographical information |
|
- Specimen size |
|
|
|
|
|
### Copyright and License |
|
The images included in the BIOSCAN-5M dataset available through this repository are subject to copyright |
|
and licensing restrictions shown in the following: |
|
|
|
- **Copyright Holder:** CBG Photography Group |
|
- **Copyright Institution:** Centre for Biodiversity Genomics (email:CBGImaging@gmail.com) |
|
- **Photographer:** CBG Robotic Imager |
|
- **Copyright License:** Creative Commons Attribution 3.0 Unported ([CC BY 3.0](https://creativecommons.org/licenses/by/3.0/)) |
|
- **Copyright Contact:** collectionsBIO@gmail.com |
|
- **Copyright Year:** 2021 |
|
|
|
### Dataset Sources |
|
|
|
<!-- Provide the basic links for the dataset. --> |
|
|
|
- **Dataset website:** https://biodiversitygenomics.net/5M-insects/ |
|
- **Google Drive:** https://drive.google.com/drive/u/1/folders/1Jc57eKkeiYrnUBc9WlIp-ZS_L1bVlT-0 |
|
- **GitHub repository:** https://github.com/zahrag/BIOSCAN-5M |
|
- **Zenodo:** https://zenodo.org/records/11973457 |
|
- **Kaggle:** https://www.kaggle.com/datasets/zahragharaee/bioscan-5m/data |
|
- **Paper:** https://arxiv.org/abs/2406.12723 |
|
|
|
|
|
|
|
### Citation |
|
|
|
``` |
|
@misc{gharaee2024bioscan5m, |
|
title={{BIOSCAN-5M}: A Multimodal Dataset for Insect Biodiversity}, |
|
author={Zahra Gharaee and Scott C. Lowe and ZeMing Gong and Pablo Millan Arias |
|
and Nicholas Pellegrino and Austin T. Wang and Joakim Bruslund Haurum |
|
and Iuliia Zarubiieva and Lila Kari and Dirk Steinke and Graham W. Taylor |
|
and Paul Fieguth and Angel X. Chang |
|
}, |
|
year={2024}, |
|
eprint={2406.12723}, |
|
archivePrefix={arXiv}, |
|
primaryClass={cs.LG}, |
|
doi={10.48550/arxiv.2406.12723}, |
|
} |
|
``` |
|
|
|
|
|
 |
|
|
|
|
