Delete results/archaea_plasmid_annotation_details.csv

results/archaea_plasmid_annotation_details.csv

@@ -1,91 +0,0 @@
-species_name,cds_number,cds_bp,metric,GENERanno,GeneLM,GeneMarkS2,MetaGeneMark2,Prodigal,MetaProdigal,Glimmer3,best_model,second_best_model
-Halobacterium_salinarum_plasmid_1,95,109026,Exact_Match_Rate,0.6210526315789474,0.5157894736842106,0.6526315789473685,0.6421052631578947,0.7263157894736842,0.6842105263157895,0.5684210526315789,Prodigal,MetaProdigal
-Halobacterium_salinarum_plasmid_1,95,109026,End_Accuracy,0.8631578947368421,0.7684210526315789,0.8736842105263158,0.8210526315789474,0.8631578947368421,0.8210526315789474,0.7684210526315789,GeneMarkS2,GENERanno
-Halobacterium_salinarum_plasmid_1,95,109026,Start_Accuracy,0.7052631578947368,0.6736842105263158,0.7157894736842105,0.7789473684210526,0.8105263157894737,0.8,0.7368421052631579,Prodigal,MetaProdigal
-Halobacterium_salinarum_plasmid_1,95,109026,Boundary_Accuracy,0.631578947368421,0.5157894736842106,0.6526315789473685,0.6421052631578947,0.7263157894736842,0.6842105263157895,0.5789473684210527,Prodigal,MetaProdigal
-Halobacterium_salinarum_plasmid_1,95,109026,BP_Precision,0.8638473102817178,0.8565393433826041,0.859594396350212,0.8511475409836066,0.8436133206649339,0.8424416871892205,0.8436715158982135,GENERanno,GeneMarkS2
-Halobacterium_salinarum_plasmid_1,95,109026,BP_Sensitivity,0.9697503347825288,0.805229945150698,0.9781428283161816,0.9762441986315192,0.9854071505879332,0.9852053638581624,0.979802982774751,Prodigal,MetaProdigal
-Halobacterium_salinarum_plasmid_2,55,63643,Exact_Match_Rate,0.6,0.509090909090909,0.5818181818181818,0.6727272727272727,0.6,0.6,0.6181818181818182,MetaGeneMark2,Glimmer3
-Halobacterium_salinarum_plasmid_2,55,63643,End_Accuracy,0.7636363636363637,0.7272727272727273,0.7818181818181819,0.7818181818181819,0.7272727272727273,0.7272727272727273,0.7454545454545455,GeneMarkS2,MetaGeneMark2
-Halobacterium_salinarum_plasmid_2,55,63643,Start_Accuracy,0.7272727272727273,0.6363636363636364,0.6909090909090909,0.8,0.7818181818181819,0.7636363636363637,0.7090909090909091,MetaGeneMark2,Prodigal
-Halobacterium_salinarum_plasmid_2,55,63643,Boundary_Accuracy,0.6,0.509090909090909,0.5818181818181818,0.6727272727272727,0.6,0.6,0.6181818181818182,MetaGeneMark2,Glimmer3
-Halobacterium_salinarum_plasmid_2,55,63643,BP_Precision,0.7468433886192994,0.7462665226232842,0.7359323849770847,0.7361198869800546,0.7187204610951009,0.7161778074404797,0.717208487892542,GENERanno,GeneLM
-Halobacterium_salinarum_plasmid_2,55,63643,BP_Sensitivity,0.9721414766745754,0.7380701726819917,0.9713872696133118,0.970177395785868,0.9796678346401018,0.9779237308109298,0.9782379837531228,Prodigal,Glimmer3
-Haloferax_volcanii_plasmid_1,38,46760,Exact_Match_Rate,0.6052631578947368,0.4736842105263157,0.5789473684210527,0.5789473684210527,0.631578947368421,0.631578947368421,0.5526315789473685,Prodigal,MetaProdigal
-Haloferax_volcanii_plasmid_1,38,46760,End_Accuracy,0.6842105263157895,0.6842105263157895,0.7105263157894737,0.7368421052631579,0.7105263157894737,0.7105263157894737,0.6842105263157895,MetaGeneMark2,GeneMarkS2
-Haloferax_volcanii_plasmid_1,38,46760,Start_Accuracy,0.8157894736842105,0.7105263157894737,0.7894736842105263,0.7631578947368421,0.8157894736842105,0.8157894736842105,0.7368421052631579,GENERanno,Prodigal
-Haloferax_volcanii_plasmid_1,38,46760,Boundary_Accuracy,0.6578947368421053,0.5,0.6052631578947368,0.6052631578947368,0.6578947368421053,0.6578947368421053,0.5789473684210527,GENERanno,Prodigal
-Haloferax_volcanii_plasmid_1,38,46760,BP_Precision,0.6861062656168969,0.6787300857843137,0.6808878728432629,0.6834724898308714,0.6659401421842545,0.6722056168802344,0.6494836550103269,GENERanno,MetaGeneMark2
-Haloferax_volcanii_plasmid_1,38,46760,BP_Sensitivity,0.9336826347305388,0.7580410607356716,0.9426860564585116,0.9558383233532934,0.9735885372112916,0.971535500427716,0.9751283147989734,Glimmer3,Prodigal
-Haloferax_volcanii_plasmid_2,1,2646,Exact_Match_Rate,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
-Haloferax_volcanii_plasmid_2,1,2646,End_Accuracy,1.0,1.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneLM
-Haloferax_volcanii_plasmid_2,1,2646,Start_Accuracy,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
-Haloferax_volcanii_plasmid_2,1,2646,Boundary_Accuracy,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
-Haloferax_volcanii_plasmid_2,1,2646,BP_Precision,0.5205587251623057,0.4343232438606511,0.5065084226646248,0.5076745970836531,0.4999055356130739,0.4999055356130739,0.5354107648725213,Glimmer3,GENERanno
-Haloferax_volcanii_plasmid_2,1,2646,BP_Sensitivity,1.0,0.5748299319727891,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
-Haloferax_volcanii_plasmid_3,266,351049,Exact_Match_Rate,0.7857142857142857,0.6428571428571429,0.7706766917293233,0.793233082706767,0.7819548872180451,0.7593984962406015,0.7218045112781954,MetaGeneMark2,GENERanno
-Haloferax_volcanii_plasmid_3,266,351049,End_Accuracy,0.8759398496240601,0.7969924812030075,0.8834586466165414,0.9022556390977444,0.8872180451127819,0.8834586466165414,0.849624060150376,MetaGeneMark2,Prodigal
-Haloferax_volcanii_plasmid_3,266,351049,Start_Accuracy,0.8984962406015038,0.7969924812030075,0.8796992481203008,0.8834586466165414,0.8759398496240601,0.8609022556390977,0.8533834586466166,GENERanno,MetaGeneMark2
-Haloferax_volcanii_plasmid_3,266,351049,Boundary_Accuracy,0.7857142857142857,0.6428571428571429,0.7781954887218046,0.8007518796992481,0.7857142857142857,0.7631578947368421,0.7330827067669173,MetaGeneMark2,GENERanno
-Haloferax_volcanii_plasmid_3,266,351049,BP_Precision,0.9292415752043082,0.9263966344918916,0.9264218843370294,0.9238375172121596,0.9212689679933262,0.9207623424994056,0.9121087591701176,GENERanno,GeneMarkS2
-Haloferax_volcanii_plasmid_3,266,351049,BP_Sensitivity,0.993411176217565,0.9246259069246744,0.9936533076579052,0.9938156781531924,0.9940862956453372,0.992946853573148,0.9888477107184468,Prodigal,MetaGeneMark2
-Haloferax_volcanii_plasmid_4,385,445574,Exact_Match_Rate,0.7272727272727273,0.5506493506493506,0.6779220779220779,0.7220779220779221,0.7220779220779221,0.7246753246753247,0.6207792207792208,GENERanno,MetaProdigal
-Haloferax_volcanii_plasmid_4,385,445574,End_Accuracy,0.825974025974026,0.7272727272727273,0.8077922077922078,0.825974025974026,0.8181818181818182,0.8207792207792208,0.7688311688311689,GENERanno,MetaGeneMark2
-Haloferax_volcanii_plasmid_4,385,445574,Start_Accuracy,0.8623376623376623,0.7532467532467533,0.8155844155844156,0.8493506493506493,0.8675324675324675,0.8597402597402597,0.8077922077922078,Prodigal,GENERanno
-Haloferax_volcanii_plasmid_4,385,445574,Boundary_Accuracy,0.7350649350649351,0.5584415584415584,0.6831168831168831,0.7298701298701299,0.7272727272727273,0.7324675324675325,0.6233766233766234,GENERanno,MetaProdigal
-Haloferax_volcanii_plasmid_4,385,445574,BP_Precision,0.8404391032517086,0.8226453209871727,0.8332582494790458,0.8340969766594214,0.8281055343328567,0.8235089230538754,0.8080702826697694,GENERanno,MetaGeneMark2
-Haloferax_volcanii_plasmid_4,385,445574,BP_Sensitivity,0.984714099117094,0.8517866841422524,0.9755057521309592,0.9809504145214936,0.98907701077711,0.98695615094238,0.9850799193848834,Prodigal,MetaProdigal
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,Exact_Match_Rate,0.7931034482758621,0.5517241379310345,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.7931034482758621,GeneMarkS2,GENERanno
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,End_Accuracy,0.7931034482758621,0.6896551724137931,0.8620689655172413,0.8275862068965517,0.7931034482758621,0.7931034482758621,0.8275862068965517,GeneMarkS2,MetaGeneMark2
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,Start_Accuracy,0.8620689655172413,0.8275862068965517,0.896551724137931,0.8620689655172413,0.8620689655172413,0.8275862068965517,0.896551724137931,GeneMarkS2,Glimmer3
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,Boundary_Accuracy,0.7931034482758621,0.6551724137931034,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.8275862068965517,GeneMarkS2,Glimmer3
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,BP_Precision,0.7360116408612418,0.7453849785087828,0.7315164717912239,0.7301590818451722,0.7230620495693444,0.7217280534141574,0.7094609129630426,GeneLM,GENERanno
-Methanocaldococcus_jannaschii_plasmid_1,29,33286,BP_Sensitivity,0.972541008231689,0.9013098600012016,0.988643874301508,0.9900558793486752,0.988643874301508,0.9872318692543413,0.9908069458631256,Glimmer3,MetaGeneMark2
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,Exact_Match_Rate,0.5,0.5,0.6666666666666666,0.6666666666666666,0.5,0.5,0.3333333333333333,GeneMarkS2,MetaGeneMark2
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,End_Accuracy,0.6666666666666666,0.5,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.5,GENERanno,GeneMarkS2
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,Start_Accuracy,0.5,0.6666666666666666,0.8333333333333334,0.8333333333333334,0.5,0.6666666666666666,0.3333333333333333,GeneMarkS2,MetaGeneMark2
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,Boundary_Accuracy,0.5,0.5,0.6666666666666666,0.6666666666666666,0.5,0.5,0.3333333333333333,GeneMarkS2,MetaGeneMark2
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,BP_Precision,0.6212283329766745,0.6436174406686115,0.6187127024722933,0.6186314218716692,0.6153465696318802,0.609151973131822,0.5823583743842364,GeneLM,GENERanno
-Methanocaldococcus_jannaschii_plasmid_2,6,8766,BP_Sensitivity,0.9934976043805612,0.931211498973306,0.9934976043805612,0.9931553730321696,0.9934976043805612,0.9931553730321696,0.8631074606433949,GENERanno,GeneMarkS2
-Methanosaeta_concilii_plasmid_1,4,1842,Exact_Match_Rate,0.5,0.5,0.5,0.5,0.5,0.5,0.5,GENERanno,GeneLM
-Methanosaeta_concilii_plasmid_1,4,1842,End_Accuracy,0.75,0.5,0.75,0.75,0.75,0.75,0.75,GENERanno,GeneMarkS2
-Methanosaeta_concilii_plasmid_1,4,1842,Start_Accuracy,0.75,0.75,0.75,0.75,0.75,0.75,0.75,GENERanno,GeneLM
-Methanosaeta_concilii_plasmid_1,4,1842,Boundary_Accuracy,0.5,0.5,0.5,0.5,0.5,0.5,0.5,GENERanno,GeneLM
-Methanosaeta_concilii_plasmid_1,4,1842,BP_Precision,0.1588478785788203,0.1428851047171657,0.1501344852881245,0.1482494969818913,0.1558111994586364,0.1447885552586071,0.1284877232142857,GENERanno,Prodigal
-Methanosaeta_concilii_plasmid_1,4,1842,BP_Sensitivity,1.0,0.7926167209554832,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
-Natronomonas_pharaonis_plasmid_1,3,1614,Exact_Match_Rate,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,End_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,Start_Accuracy,0.3333333333333333,0.6666666666666666,0.6666666666666666,1.0,1.0,1.0,0.3333333333333333,MetaGeneMark2,Prodigal
-Natronomonas_pharaonis_plasmid_1,3,1614,Boundary_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,BP_Precision,0.0552503368922981,0.0689845779669448,0.063712477026751,0.0802567419643745,0.0796879628715315,0.0799603666088679,0.061195836359235,MetaGeneMark2,MetaProdigal
-Natronomonas_pharaonis_plasmid_1,3,1614,BP_Sensitivity,0.6604708798017348,0.7732342007434945,0.7732342007434945,0.9993804213135068,1.0,1.0,0.7831474597273854,Prodigal,MetaProdigal
-Natronomonas_pharaonis_plasmid_2,77,89870,Exact_Match_Rate,0.7012987012987013,0.4415584415584415,0.5454545454545454,0.6753246753246753,0.6883116883116883,0.6883116883116883,0.5844155844155844,GENERanno,Prodigal
-Natronomonas_pharaonis_plasmid_2,77,89870,End_Accuracy,0.8051948051948052,0.6883116883116883,0.7272727272727273,0.8181818181818182,0.8051948051948052,0.8051948051948052,0.7792207792207793,MetaGeneMark2,GENERanno
-Natronomonas_pharaonis_plasmid_2,77,89870,Start_Accuracy,0.8181818181818182,0.6233766233766234,0.7532467532467533,0.7922077922077922,0.8051948051948052,0.8051948051948052,0.7012987012987013,GENERanno,Prodigal
-Natronomonas_pharaonis_plasmid_2,77,89870,Boundary_Accuracy,0.7012987012987013,0.4415584415584415,0.5584415584415584,0.7012987012987013,0.6883116883116883,0.6883116883116883,0.5844155844155844,GENERanno,MetaGeneMark2
-Natronomonas_pharaonis_plasmid_2,77,89870,BP_Precision,0.8441896522022089,0.8206721404443129,0.8453289818754006,0.8408012903102662,0.8114014470712936,0.812648316235607,0.8046610632027071,GeneMarkS2,GENERanno
-Natronomonas_pharaonis_plasmid_2,77,89870,BP_Sensitivity,0.9814843663068876,0.7407143651941693,0.9683987982641592,0.9803048848336486,0.9795593635250918,0.9792923111160564,0.984288416601758,Glimmer3,GENERanno
-Halobacterium_salinarum_plasmid_1,95,109026,Exact_Match_Rate,0.6210526315789474,0.5157894736842106,0.6631578947368421,0.6421052631578947,0.6631578947368421,0.6842105263157895,0.5684210526315789,MetaProdigal,GeneMarkS2
-Halobacterium_salinarum_plasmid_1,95,109026,End_Accuracy,0.8631578947368421,0.7684210526315789,0.8631578947368421,0.8210526315789474,0.7894736842105263,0.8210526315789474,0.7684210526315789,GENERanno,GeneMarkS2
-Halobacterium_salinarum_plasmid_1,95,109026,Start_Accuracy,0.7263157894736842,0.6736842105263158,0.7368421052631579,0.7684210526315789,0.7789473684210526,0.8,0.7368421052631579,MetaProdigal,Prodigal
-Halobacterium_salinarum_plasmid_1,95,109026,Boundary_Accuracy,0.631578947368421,0.5157894736842106,0.6631578947368421,0.6421052631578947,0.6631578947368421,0.6842105263157895,0.5789473684210527,MetaProdigal,GeneMarkS2
-Halobacterium_salinarum_plasmid_1,95,109026,BP_Precision,0.862152338429549,0.8565393433826041,0.8584470838503812,0.8509433962264151,0.8462794458007038,0.8424416871892205,0.8436715158982135,GENERanno,GeneMarkS2
-Halobacterium_salinarum_plasmid_1,95,109026,BP_Sensitivity,0.9811879735109056,0.805229945150698,0.977152238915488,0.9762441986315192,0.9793076880744044,0.9852053638581624,0.979802982774751,MetaProdigal,GENERanno
-Halobacterium_salinarum_plasmid_2,55,63643,Exact_Match_Rate,0.6,0.509090909090909,0.6363636363636364,0.6727272727272727,0.4727272727272727,0.6,0.6181818181818182,MetaGeneMark2,GeneMarkS2
-Halobacterium_salinarum_plasmid_2,55,63643,End_Accuracy,0.7636363636363637,0.7272727272727273,0.8,0.8,0.5818181818181818,0.7272727272727273,0.7454545454545455,GeneMarkS2,MetaGeneMark2
-Halobacterium_salinarum_plasmid_2,55,63643,Start_Accuracy,0.7636363636363637,0.6363636363636364,0.7090909090909091,0.7818181818181819,0.6545454545454545,0.7636363636363637,0.7090909090909091,MetaGeneMark2,GENERanno
-Halobacterium_salinarum_plasmid_2,55,63643,Boundary_Accuracy,0.6,0.509090909090909,0.6363636363636364,0.6727272727272727,0.4727272727272727,0.6,0.6181818181818182,MetaGeneMark2,GeneMarkS2
-Halobacterium_salinarum_plasmid_2,55,63643,BP_Precision,0.7493222181084213,0.7462665226232842,0.7438024466080025,0.7381364738482854,0.710356702978703,0.7161778074404797,0.717208487892542,GENERanno,GeneLM
-Halobacterium_salinarum_plasmid_2,55,63643,BP_Sensitivity,0.9858114796599784,0.7380701726819917,0.9735241896202254,0.9710258787297896,0.933409801549267,0.9779237308109298,0.9782379837531228,GENERanno,Glimmer3
-Natronomonas_pharaonis_plasmid_1,3,1614,Exact_Match_Rate,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,End_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,Start_Accuracy,0.3333333333333333,0.6666666666666666,0.6666666666666666,1.0,0.3333333333333333,1.0,0.3333333333333333,MetaGeneMark2,MetaProdigal
-Natronomonas_pharaonis_plasmid_1,3,1614,Boundary_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
-Natronomonas_pharaonis_plasmid_1,3,1614,BP_Precision,0.0552503368922981,0.0689845779669448,0.0641117846501592,0.0802567419643745,0.064066852367688,0.0799603666088679,0.061195836359235,MetaGeneMark2,MetaProdigal
-Natronomonas_pharaonis_plasmid_1,3,1614,BP_Sensitivity,0.6604708798017348,0.7732342007434945,0.7732342007434945,0.9993804213135068,0.8122676579925651,1.0,0.7831474597273854,MetaProdigal,MetaGeneMark2
-Natronomonas_pharaonis_plasmid_2,77,89870,Exact_Match_Rate,0.6883116883116883,0.4415584415584415,0.5844155844155844,0.6883116883116883,0.6233766233766234,0.6883116883116883,0.5844155844155844,GENERanno,MetaGeneMark2
-Natronomonas_pharaonis_plasmid_2,77,89870,End_Accuracy,0.8051948051948052,0.6883116883116883,0.7272727272727273,0.8181818181818182,0.7532467532467533,0.8051948051948052,0.7792207792207793,MetaGeneMark2,GENERanno
-Natronomonas_pharaonis_plasmid_2,77,89870,Start_Accuracy,0.8051948051948052,0.6233766233766234,0.7922077922077922,0.8051948051948052,0.7922077922077922,0.8051948051948052,0.7012987012987013,GENERanno,MetaGeneMark2
-Natronomonas_pharaonis_plasmid_2,77,89870,Boundary_Accuracy,0.6883116883116883,0.4415584415584415,0.5974025974025974,0.7142857142857143,0.6363636363636364,0.6883116883116883,0.5844155844155844,MetaGeneMark2,GENERanno
-Natronomonas_pharaonis_plasmid_2,77,89870,BP_Precision,0.8417770849571318,0.8206721404443129,0.8455223303971565,0.8408514129791822,0.8053632507867013,0.812648316235607,0.8046610632027071,GeneMarkS2,GENERanno
-Natronomonas_pharaonis_plasmid_2,77,89870,BP_Sensitivity,0.985423389340158,0.7407143651941693,0.9740959163235784,0.980672081896072,0.98248581284077,0.9792923111160564,0.984288416601758,GENERanno,Glimmer3