Update constants.py - adding biosses

constants.py

@@ -72,6 +72,17 @@ CITATIONS = {
           url = "https://aclanthology.org/W04-1213",
           pages = "73--78",
           }""",
+          
+   "BIOSSES": """@article{souganciouglu2017biosses,
+                    title={BIOSSES: a semantic sentence similarity estimation system for the biomedical domain},
+                    author={So{\u{g}}anc{\i}o{\u{g}}lu, Gizem and {\"O}zt{\"u}rk, Hakime and {\"O}zg{\"u}r, Arzucan},
+                    journal={Bioinformatics},
+                    volume={33},
+                    number={14},
+                    pages={i49--i58},
+                    year={2017},
+                    publisher={Oxford University Press}
+                  }"""
 
 }
 
@@ -135,6 +146,15 @@ DESCRIPTIONS = {
                     Corpus format: The JNLPBA corpus is distributed in IOB format, with each line 
                     containing a single token and its tag, separated by a tab character. 
                     Sentences are separated by blank lines.""",
+                    
+  "BIOSSES": """BIOSSES is a benchmark dataset for biomedical sentence similarity estimation. The dataset comprises 100 sentence pairs, in which each sentence was selected from the [TAC (Text Analysis Conference) Biomedical Summarization Track Training Dataset](https://tac.nist.gov/2014/BiomedSumm/) containing articles from the biomedical domain. The sentence pairs in BIOSSES were selected from citing sentences, i.e. sentences that have a citation to a reference article. 
+The sentence pairs were evaluated by five different human experts that judged their similarity and gave scores ranging from 0 (no relation) to 4 (equivalent). In the original paper the mean of the scores assigned by the five human annotators was taken as the gold standard. The Pearson correlation between the gold standard scores and the scores estimated by the models was used as the evaluation metric. The strength of correlation can be assessed by the general guideline proposed by Evans (1996) as follows:
+- very strong: 0.80–1.00
+- strong: 0.60–0.79
+- moderate: 0.40–0.59
+- weak: 0.20–0.39
+- very weak: 0.00–0.19
+"""
 }
 
 HOMEPAGES = {
@@ -144,6 +164,7 @@ HOMEPAGES = {
   "BC2GM-IOB": "https://biocreative.bioinformatics.udel.edu/tasks/biocreative-ii/task-1a-gene-mention-tagging/",
   "NCBI-disease-IOB":"https://www.ncbi.nlm.nih.gov/CBBresearch/Dogan/DISEASE/",
   "JNLPBA":"http://www.geniaproject.org/shared-tasks/bionlp-jnlpba-shared-task-2004",
+  "BIOSSES":"https://tabilab.cmpe.boun.edu.tr/BIOSSES/DataSet.html",
 
 }
 
@@ -154,5 +175,5 @@ DATA_URL = {
   "BC5CDR-disease-IOB": "https://github.com/cambridgeltl/MTL-Bioinformatics-2016/raw/master/data/",
   "BC2GM-IOB": "https://github.com/cambridgeltl/MTL-Bioinformatics-2016/raw/master/data/",
   "NCBI-disease-IOB": "https://github.com/cambridgeltl/MTL-Bioinformatics-2016/raw/master/data/",
-  "JNLPBA": "https://github.com/cambridgeltl/MTL-Bioinformatics-2016/raw/master/data/",
+  "BIOSSES": "https://github.com/gizemsogancioglu/biosses",
 }