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README.md

@@ -13,15 +13,14 @@ pretty_name: Hackett, 2020 Overexpression
 size_categories:
 - 1M<n<10M
 experimental_conditions:
-  environmental_conditions:
-    temperature_celsius: 30
-    cultivation_method: chemostat
-    media:
-      name: minimal
-      carbon_source:
-        - compound: D-glucose
-          # Saldanha et al 2004: 10 g/l
-          concentration_percent: 1
+  temperature_celsius: 30
+  cultivation_method: chemostat
+  media:
+    name: minimal
+    carbon_source:
+      - compound: D-glucose
+        # Saldanha et al 2004: 10 g/l
+        concentration_percent: 1
 configs:
   - config_name: hackett_2020
     description: TF overexpression data from Hackett 2020
@@ -102,23 +101,21 @@ configs:
           role: experimental_condition
           definitions:
             P:
-              environmental_conditions:
-                media:
-                  nitrogen_source:
-                    - compound: ammonium_sulfate
-                      # Saldanha et al 2004: 5 g/l
-                      concentration_percent: 0.5
-                  phosphate_source:
-                    - compound: potassium_phosphate_monobasic
-                      # Hackett et al 2020: 20 mg/l
-                      concentration_percent: 0.002
+              media:
+                nitrogen_source:
+                  - compound: ammonium_sulfate
+                    # Saldanha et al 2004: 5 g/l
+                    concentration_percent: 0.5
+                phosphate_source:
+                  - compound: potassium_phosphate_monobasic
+                    # Hackett et al 2020: 20 mg/l
+                    concentration_percent: 0.002
             N:
-              environmental_conditions:
-                media:
-                  nitrogen_source:
-                    - compound: ammonium_sulfate
-                      # Hackett et al 2020: 40 mg/l
-                      concentration_percent: 0.004
+              media:
+                nitrogen_source:
+                  - compound: ammonium_sulfate
+                    # Hackett et al 2020: 40 mg/l
+                    concentration_percent: 0.004
             M:
               description: "Not defined in the paper or on the Calico website"
         - name: date