Datasets:
fixing readme yaml
Browse files
README.md
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@@ -284,59 +284,59 @@ configs:
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dtype: string
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description: Additional notes or comments about the experiment
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- name: condition
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- config_name: annotated_features_orig_reprocess
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description: >-
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dtype: string
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description: Additional notes or comments about the experiment
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- name: condition
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dtype:
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class_label:
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names: [
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"standard", "rapa", "starvation", "glu_1_gal_1",
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"del_MET28", "glu_1_gal_2", "del_FKH2", "del_TYE7"
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]
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description: >-
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Experimental condition of the sample, including standard growth, rapamycin treatment,
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nutrient starvation, mixed carbon source conditions, and gene deletion strains
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role: experimental_condition
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definitions:
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standard:
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media:
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name: synthetic_complete
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carbon_source:
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- compound: D-glucose
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concentration_percent: 2
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rapa:
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perturbation_method:
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type: chemical_treatment
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compound: rapamycin
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description: Rapamycin treatment to inhibit TORC1 signaling
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starvation:
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description: "Nutrient starvation condition - specific media composition not defined in source"
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glu_1_gal_1:
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media:
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carbon_source:
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- compound: D-glucose
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concentration_percent: 1
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- compound: D-galactose
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concentration_percent: 1
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glu_1_gal_2:
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media:
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carbon_source:
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- compound: D-glucose
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concentration_percent: 1
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- compound: D-galactose
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concentration_percent: 2
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del_MET28:
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genotype:
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deletions:
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- gene: MET28
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description: MET28 deletion strain
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del_FKH2:
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genotype:
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deletions:
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- gene: FKH2
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description: FKH2 deletion strain
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del_TYE7:
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genotype:
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deletions:
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- gene: TYE7
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description: TYE7 deletion strain
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- config_name: annotated_features_orig_reprocess
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description: >-
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