cmatkhan commited on
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1 Parent(s): c208867

fixing readme yaml

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  1. README.md +53 -53
README.md CHANGED
@@ -284,59 +284,59 @@ configs:
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  dtype: string
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  description: Additional notes or comments about the experiment
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  - name: condition
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- dtype:
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- class_label:
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- names: [
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- "standard", "rapa", "starvation", "glu_1_gal_1",
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- "del_MET28", "glu_1_gal_2", "del_FKH2", "del_TYE7"
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- ]
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- description: >-
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- Experimental condition of the sample, including standard growth, rapamycin treatment,
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- nutrient starvation, mixed carbon source conditions, and gene deletion strains
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- role: experimental_condition
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- definitions:
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- standard:
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- media:
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- name: synthetic_complete
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- carbon_source:
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- - compound: D-glucose
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- concentration_percent: 2
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- rapa:
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- perturbation_method:
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- type: chemical_treatment
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- compound: rapamycin
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- description: Rapamycin treatment to inhibit TORC1 signaling
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- starvation:
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- description: "Nutrient starvation condition - specific media composition not defined in source"
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- glu_1_gal_1:
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- media:
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- carbon_source:
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- - compound: D-glucose
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- concentration_percent: 1
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- - compound: D-galactose
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- concentration_percent: 1
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- glu_1_gal_2:
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- media:
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- carbon_source:
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- - compound: D-glucose
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- concentration_percent: 1
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- - compound: D-galactose
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- concentration_percent: 2
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- del_MET28:
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- genotype:
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- deletions:
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- - gene: MET28
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- description: MET28 deletion strain
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- del_FKH2:
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- genotype:
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- deletions:
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- - gene: FKH2
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- description: FKH2 deletion strain
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- del_TYE7:
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- genotype:
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- deletions:
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- - gene: TYE7
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- description: TYE7 deletion strain
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  - config_name: annotated_features_orig_reprocess
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  description: >-
 
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  dtype: string
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  description: Additional notes or comments about the experiment
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  - name: condition
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+ dtype:
288
+ class_label:
289
+ names: [
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+ "standard", "rapa", "starvation", "glu_1_gal_1",
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+ "del_MET28", "glu_1_gal_2", "del_FKH2", "del_TYE7"
292
+ ]
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+ description: >-
294
+ Experimental condition of the sample, including standard growth, rapamycin treatment,
295
+ nutrient starvation, mixed carbon source conditions, and gene deletion strains
296
+ role: experimental_condition
297
+ definitions:
298
+ standard:
299
+ media:
300
+ name: synthetic_complete
301
+ carbon_source:
302
+ - compound: D-glucose
303
+ concentration_percent: 2
304
+ rapa:
305
+ perturbation_method:
306
+ type: chemical_treatment
307
+ compound: rapamycin
308
+ description: Rapamycin treatment to inhibit TORC1 signaling
309
+ starvation:
310
+ description: "Nutrient starvation condition - specific media composition not defined in source"
311
+ glu_1_gal_1:
312
+ media:
313
+ carbon_source:
314
+ - compound: D-glucose
315
+ concentration_percent: 1
316
+ - compound: D-galactose
317
+ concentration_percent: 1
318
+ glu_1_gal_2:
319
+ media:
320
+ carbon_source:
321
+ - compound: D-glucose
322
+ concentration_percent: 1
323
+ - compound: D-galactose
324
+ concentration_percent: 2
325
+ del_MET28:
326
+ genotype:
327
+ deletions:
328
+ - gene: MET28
329
+ description: MET28 deletion strain
330
+ del_FKH2:
331
+ genotype:
332
+ deletions:
333
+ - gene: FKH2
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+ description: FKH2 deletion strain
335
+ del_TYE7:
336
+ genotype:
337
+ deletions:
338
+ - gene: TYE7
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+ description: TYE7 deletion strain
340
 
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  - config_name: annotated_features_orig_reprocess
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  description: >-