Update README.md
Browse files
README.md
CHANGED
@@ -166,6 +166,14 @@ task_categories:
|
|
166 |
|
167 |
![image.png](./OPI_logo.png)
|
168 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
169 |
## Dataset Update
|
170 |
The previous version of OPI dataset is based on the **release 2022_01** of UniProtKB/Swiss-Prot protein knowledgebase. At current, OPI is updated to contain the latest **release 2023_05**, which can be accessed via the dataset file [OPI_updated_160k.json](./OPI_DATA/OPI_updated_160k.json).
|
171 |
|
@@ -181,14 +189,6 @@ Reference:
|
|
181 |
- **Leaderboard:**
|
182 |
- **Point of Contact:** -->
|
183 |
|
184 |
-
## Dataset Overview
|
185 |
-
|
186 |
-
**Dataset size: 1.61M samples in total, covering 9 protein-related tasks.**
|
187 |
-
|
188 |
-
We are excited to announce the release of the **Open Protein Instructions (OPI)** dataset, a curated collection of instructions covering 9 tasks for adapting LLMs to protein biology. The dataset is designed to advance LLM-driven research in the field of protein biology. We welcome contributions and enhancements to this dataset from the community.
|
189 |
-
|
190 |
-
OPI is the initial part of Open Biology Instructions(OBI) project, together with the subsequent Open Molecule Instructions(OMI), Open DNA Instructions(ODI), Open RNA Instructions(ORI) and Open Single-cell Instructions (OSCI). OBI is a project which aims to fully leverage the potential ability of Large Language Models(LLMs), especially the scientific LLMs like Galactica, to facilitate research in AI for Life Science community. While OBI is still in an early stage, we hope to provide a starting point for the community to bridge LLMs and biological domain knowledge.
|
191 |
-
|
192 |
## OPI Dataset Construction Pipeline
|
193 |
The OPI dataset is curated on our own by extracting key information from [Swiss-Prot](https://www.uniprot.org/uniprotkb?facets=reviewed%3Atrue&query=%2A) database. The following figure shows the general construction process.
|
194 |
![image.png](./OPI_data.png)
|
|
|
166 |
|
167 |
![image.png](./OPI_logo.png)
|
168 |
|
169 |
+
# Dataset Overview
|
170 |
+
|
171 |
+
**Dataset size: 1.61M samples in total, covering 9 protein-related tasks.**
|
172 |
+
|
173 |
+
We are excited to announce the release of the **Open Protein Instructions (OPI)** dataset, a curated collection of instructions covering 9 tasks for adapting LLMs to protein biology. The dataset is designed to advance LLM-driven research in the field of protein biology. We welcome contributions and enhancements to this dataset from the community.
|
174 |
+
|
175 |
+
OPI is the initial part of Open Biology Instructions(OBI) project, together with the subsequent Open Molecule Instructions(OMI), Open DNA Instructions(ODI), Open RNA Instructions(ORI) and Open Single-cell Instructions (OSCI). OBI is a project which aims to fully leverage the potential ability of Large Language Models(LLMs), especially the scientific LLMs like Galactica, to facilitate research in AI for Life Science community. While OBI is still in an early stage, we hope to provide a starting point for the community to bridge LLMs and biological domain knowledge.
|
176 |
+
|
177 |
## Dataset Update
|
178 |
The previous version of OPI dataset is based on the **release 2022_01** of UniProtKB/Swiss-Prot protein knowledgebase. At current, OPI is updated to contain the latest **release 2023_05**, which can be accessed via the dataset file [OPI_updated_160k.json](./OPI_DATA/OPI_updated_160k.json).
|
179 |
|
|
|
189 |
- **Leaderboard:**
|
190 |
- **Point of Contact:** -->
|
191 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
192 |
## OPI Dataset Construction Pipeline
|
193 |
The OPI dataset is curated on our own by extracting key information from [Swiss-Prot](https://www.uniprot.org/uniprotkb?facets=reviewed%3Atrue&query=%2A) database. The following figure shows the general construction process.
|
194 |
![image.png](./OPI_data.png)
|