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license: mit |
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This dataset is obtained from a [UniProt search](https://www.uniprot.org/uniprotkb?facets=proteins_with%3A9%2Cannotation_score%3A4&fields=accession%2Cprotein_families%2Cft_binding%2Cft_act_site%2Csequence%2Ccc_similarity&query=%28ft_binding%3A*%29+AND+%28family%3A*%29&view=table) |
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for protein sequences with family and binding site annotations. The dataset includes unreviewed (TrEMBL) protein sequences as well as |
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reviewed sequences. We refined the dataset by only including sequences with an annotation score of 4. We sorted and split by family, where |
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random families were selected for the test dataset until approximately 20% of the protein sequences were separated out for test data. |
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We excluded any sequences with `<`, `>`, or `?` in the binding site annotations. We furthermore included any active sites that were not |
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listed as binding sites in the labels. We split any sequence longer than 1000 residues into non-overlapping sections of 1000 amino acids or |
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less after the train test split. |
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