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Geneformer

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Geneformer / geneformer

13 contributors

History: 82 commits

hchen725's picture

Update geneformer/emb_extractor.py

4c0377b verified about 2 months ago

__init__.py

656 Bytes

fix cell state gene embeddings bug (#345) about 2 months ago
classifier.py

60.7 kB

patch datasets save_to_disk 2 months ago
classifier_utils.py

16.7 kB

Update for gene classification (#330) 4 months ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification about 1 year ago
emb_extractor.py

29.3 kB

Update geneformer/emb_extractor.py about 2 months ago
evaluation_utils.py

9.76 kB

update examples for predict_eval and handle roc for 2 cell classes 5 months ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card almost 2 years ago
gene_name_id_dict.pkl

1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) about 1 year ago
in_silico_perturber.py

38.9 kB

fix cell state gene embeddings bug (#345) about 2 months ago
in_silico_perturber_stats.py

43.5 kB

Upload in_silico_perturber_stats.py (#313) about 2 months ago
perturber_utils.py

26.9 kB

fix cell state gene embeddings bug (#345) about 2 months ago
pretrainer.py

37.1 kB

update kwargs for pretrainer 3 months ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
tokenizer.py

16.5 kB

fix cell state gene embeddings bug (#345) about 2 months ago