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ctheodoris
/
Geneformer
like
206
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
459
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ec19834
Geneformer
/
geneformer
15 contributors
History:
99 commits
ctheodoris
rename for consistency
ec19834
verified
4 months ago
__init__.py
Safe
973 Bytes
Add function for summing of Ensembl IDs (#377)
4 months ago
classifier.py
Safe
60.7 kB
move dicts to init
5 months ago
classifier_utils.py
Safe
16.7 kB
save pval
5 months ago
collator_for_classification.py
Safe
29.9 kB
move dicts to init
5 months ago
emb_extractor.py
Safe
31.5 kB
move dicts to init
5 months ago
ensembl_mapping_dict_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
3.96 MB
LFS
Add function for summing of Ensembl IDs (#377)
4 months ago
evaluation_utils.py
Safe
9.75 kB
move dicts to init
5 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
about 2 years ago
gene_median_dictionary_gc95M.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
How to fix it?
1.51 MB
LFS
Add function for summing of Ensembl IDs (#377)
4 months ago
gene_name_id_dict.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
gene_name_id_dict_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
2.04 MB
LFS
rename for consistency
4 months ago
in_silico_perturber.py
Safe
39.2 kB
add typing list import
5 months ago
in_silico_perturber_stats.py
Safe
44.1 kB
move dicts to init
5 months ago
perturber_utils.py
Safe
26.8 kB
move dicts to init
5 months ago
pretrainer.py
Safe
37.1 kB
move dicts to init
5 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
token_dictionary_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
426 kB
Add function for summing of Ensembl IDs (#377)
4 months ago
tokenizer.py
Safe
25.4 kB
Add function for summing of Ensembl IDs (#377)
4 months ago
