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ctheodoris
/
Geneformer
like
194
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
431
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cec6545
Geneformer
/
geneformer
13 contributors
History:
94 commits
hchen725
Update geneformer/perturber_utils.py
cec6545
verified
3 months ago
__init__.py
656 Bytes
fix cell state gene embeddings bug (#345)
4 months ago
classifier.py
60.7 kB
patch datasets save_to_disk
5 months ago
classifier_utils.py
16.7 kB
Update for gene classification (#330)
6 months ago
collator_for_classification.py
29.8 kB
Subclass collator for cell classification
over 1 year ago
emb_extractor.py
31.7 kB
update to enable cls emb
3 months ago
evaluation_utils.py
9.76 kB
update examples for predict_eval and handle roc for 2 cell classes
7 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
about 2 years ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
in_silico_perturber.py
51.1 kB
add isp for perturb all with cls
3 months ago
in_silico_perturber_stats.py
44.1 kB
update to account for set of perturbed genes with aggregate_data
3 months ago
perturber_utils.py
31.3 kB
Update geneformer/perturber_utils.py
3 months ago
pretrainer.py
37.1 kB
update kwargs for pretrainer
6 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
tokenizer.py
16.5 kB
update tokenizer to include eos token
4 months ago