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Geneformer

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Geneformer / geneformer

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15 contributors

History: 15 commits

Christina Theodoris

Update pretrainer for transformers==4.28.0

b925dcc almost 2 years ago

__init__.py

580 Bytes

add in silico perturbation module almost 2 years ago
collator_for_cell_classification.py

28.8 kB

Add data collator for cell classification and example for cell classification over 2 years ago
collator_for_gene_classification.py

28.1 kB

Add data collator for gene classification and example for gene classification over 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 2 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) almost 2 years ago
in_silico_perturber.py

38.2 kB

add in silico perturbation module almost 2 years ago
in_silico_perturber_stats.py

15 kB

Fixes to stats and adding gene dict attempt number 2 (#13) almost 2 years ago
pretrainer.py

37 kB

Update pretrainer for transformers==4.28.0 almost 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl about 2 years ago
tokenizer.py

7.89 kB

Fix bug with metadata when processing multiple .loom files (#3) about 2 years ago