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Geneformer

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Geneformer / geneformer

15 contributors

History: 7 commits

ctheodoris's picture

Fix bug with metadata when processing multiple .loom files (#3)

044d737 over 1 year ago

__init__.py

394 Bytes

Add data collator for cell classification and example for cell classification about 2 years ago
collator_for_cell_classification.py

28.8 kB

Add data collator for cell classification and example for cell classification about 2 years ago
collator_for_gene_classification.py

28.1 kB

Add data collator for gene classification and example for gene classification about 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card about 2 years ago
pretrainer.py

36.8 kB

Add data collator for cell classification and example for cell classification about 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl over 1 year ago
tokenizer.py

7.89 kB

Fix bug with metadata when processing multiple .loom files (#3) over 1 year ago