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ctheodoris
/
Geneformer
like
160
Fill-Mask
Transformers
PyTorch
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
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348
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9e9cca9
Geneformer
/
examples
13 contributors
History:
32 commits
Christina Theodoris
Add classifier module and examples
9e9cca9
3 months ago
pretraining_new_model
Update links including unsorted example lengths file
12 months ago
cell_classification.ipynb
106 kB
Add classifier module and examples
3 months ago
extract_and_plot_cell_embeddings.ipynb
1.13 MB
Add classifier module and examples
3 months ago
gene_classification.ipynb
180 kB
Add classifier module and examples
3 months ago
hyperparam_optimiz_for_disease_classifier.py
7.84 kB
Config head node runtime via IP (#234)
9 months ago
in_silico_perturbation.ipynb
5.06 kB
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
7 months ago
tokenizing_scRNAseq_data.ipynb
3.74 kB
anndata_tokenizer (#170)
9 months ago