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ctheodoris
/
Geneformer
like
191
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
428
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94095d1
Geneformer
/
geneformer
13 contributors
History:
76 commits
ctheodoris
Update for gene classification (
#330
)
94095d1
verified
6 months ago
__init__.py
646 Bytes
Prevent ruff/isort on init
7 months ago
classifier.py
60.6 kB
Update with gene classifier, custom token dict, and str validate options (#329)
6 months ago
classifier_utils.py
16.7 kB
Update for gene classification (#330)
6 months ago
collator_for_classification.py
29.8 kB
Subclass collator for cell classification
over 1 year ago
emb_extractor.py
29.3 kB
Add classifier module and examples
7 months ago
evaluation_utils.py
9.76 kB
update examples for predict_eval and handle roc for 2 cell classes
7 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
almost 2 years ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
in_silico_perturber.py
38.7 kB
add load model for train and fix validate anchor gene error
7 months ago
in_silico_perturber_stats.py
43.2 kB
Add classifier module and examples
7 months ago
perturber_utils.py
24.9 kB
add load model for train and fix validate anchor gene error
7 months ago
pretrainer.py
37 kB
fix: incorrect condition control flow (#261)
11 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
tokenizer.py
16.5 kB
correct typo
7 months ago