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ctheodoris
/
Geneformer
like
230
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
Model card
Files
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817eca2
Geneformer
/
geneformer
Ctrl+K
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15 contributors
History:
98 commits
ctheodoris
delete old gene name dict
817eca2
verified
9 months ago
__init__.py
973 Bytes
Add function for summing of Ensembl IDs (#377)
9 months ago
classifier.py
60.7 kB
move dicts to init
10 months ago
classifier_utils.py
16.7 kB
save pval
10 months ago
collator_for_classification.py
29.9 kB
move dicts to init
10 months ago
emb_extractor.py
31.5 kB
move dicts to init
10 months ago
ensembl_mapping_dict_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
3.96 MB
LFS
Add function for summing of Ensembl IDs (#377)
9 months ago
evaluation_utils.py
9.75 kB
move dicts to init
10 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
over 2 years ago
gene_median_dictionary_gc95M.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
How to fix it?
1.51 MB
LFS
Add function for summing of Ensembl IDs (#377)
9 months ago
gene_name_id_dict.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
almost 2 years ago
gene_name_id_dict_gc95m.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
2.04 MB
LFS
update to only have gene names as keys in gene_name_id_dict
9 months ago
in_silico_perturber.py
39.2 kB
add typing list import
10 months ago
in_silico_perturber_stats.py
44.1 kB
move dicts to init
10 months ago
perturber_utils.py
26.8 kB
move dicts to init
10 months ago
pretrainer.py
37.1 kB
move dicts to init
10 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
about 2 years ago
token_dictionary_gc95M.pkl
Safe
pickle
Pickle imports
No problematic imports detected
What is a pickle import?
426 kB
Add function for summing of Ensembl IDs (#377)
9 months ago
tokenizer.py
25.4 kB
Add function for summing of Ensembl IDs (#377)
9 months ago
