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Geneformer

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Geneformer / geneformer

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16 contributors

History: 21 commits

Christina Theodoris

Add stats with mixture model to determine whether test perturbation is in impact component

d20ad0a almost 2 years ago

__init__.py

518 Bytes

Subclass collator for cell classification almost 2 years ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification almost 2 years ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card over 2 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) almost 2 years ago
in_silico_perturber.py

38.4 kB

Fix bug in clearing cache almost 2 years ago
in_silico_perturber_stats.py

21.4 kB

Add stats with mixture model to determine whether test perturbation is in impact component almost 2 years ago
pretrainer.py

37 kB

Update pretrainer for transformers==4.28.0 almost 2 years ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl about 2 years ago
tokenizer.py

8.43 kB

Add further explanation regarding input file format for transcriptome tokenizer almost 2 years ago