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ctheodoris
/
Geneformer
like
230
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
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Geneformer
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examples
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15 contributors
History:
34 commits
Christina Theodoris
add option for hyperparameter tuning to cc.validate
4bddd45
about 1 year ago
pretraining_new_model
Update links including unsorted example lengths file
almost 2 years ago
cell_classification.ipynb
106 kB
add option for hyperparameter tuning to cc.validate
about 1 year ago
extract_and_plot_cell_embeddings.ipynb
1.13 MB
Add classifier module and examples
about 1 year ago
gene_classification.ipynb
180 kB
Add classifier module and examples
about 1 year ago
in_silico_perturbation.ipynb
5.06 kB
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
over 1 year ago
tokenizing_scRNAseq_data.ipynb
3.74 kB
anndata_tokenizer (#170)
over 1 year ago
