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ctheodoris
/
Geneformer
like
193
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
429
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3ec9cba
Geneformer
/
geneformer
13 contributors
History:
105 commits
hchen725
Delete geneformer/ensembl_mapping_dict_gc95M.pickle
004f5b4
verified
about 2 months ago
__init__.py
973 Bytes
Update geneformer/__init__.py
about 2 months ago
classifier.py
60.7 kB
move dicts to init
3 months ago
classifier_utils.py
16.7 kB
save pval
3 months ago
collator_for_classification.py
29.9 kB
move dicts to init
3 months ago
emb_extractor.py
31.5 kB
move dicts to init
3 months ago
ensembl_mapping_dict_gc95M.pkl
pickle
3.96 MB
LFS
Upload 4 files
about 2 months ago
evaluation_utils.py
9.75 kB
move dicts to init
3 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
about 2 years ago
gene_median_dictionary_gc95M.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
How to fix it?
1.51 MB
LFS
Upload 4 files
about 2 months ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
over 1 year ago
gene_name_id_dict_gc95M.pkl
pickle
1.66 MB
LFS
Upload 2 files
about 2 months ago
in_silico_perturber.py
39.2 kB
add typing list import
3 months ago
in_silico_perturber_stats.py
44.1 kB
move dicts to init
3 months ago
perturber_utils.py
26.8 kB
move dicts to init
3 months ago
pretrainer.py
37.1 kB
move dicts to init
3 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
token_dictionary_gc95M.pkl
pickle
426 kB
Upload 2 files
about 2 months ago
tokenizer.py
25.4 kB
Update geneformer/tokenizer.py
about 2 months ago