Commit History

add in silico perturbation module
efec1c4

Christina Theodoris commited on

Add gene name : Ensembl ID dictionary
09276dd

ctheodoris commited on

Add example for hyperparameter optimization for disease classifier
79a0c41

Christina Theodoris commited on

Update model card
b2aee1b

ctheodoris commited on

Fix bug with metadata when processing multiple .loom files (#3)
044d737

ctheodoris davidjwen commited on

Update token_dictionary.pkl
1987df4

ctheodoris commited on

Delete geneformer/token_dictionary.pkl
870b99b

ctheodoris commited on

Update README.md
5e1ff99

ctheodoris commited on

Add data collator for gene classification and example for gene classification
edacd12

Christina Theodoris commited on

Add data collator for cell classification and example for cell classification
088ea6e

Christina Theodoris commited on

update model card with installation instructions
f0de016

ctheodoris commited on

Add alternative methods comparison examples
277b470

Christina Theodoris commited on

Update README.md
c33c308

ctheodoris commited on

Add Geneformer trainer and pretraining example
bcc03e8

Christina Theodoris commited on

Add Geneformer tokenizer and updated model card
5426788

Christina Theodoris commited on

Add setup.py
b73028f

ctheodoris commited on

Add MANIFEST.in
1163e5e

ctheodoris commited on

update README.md
1ff02e6

Christina Theodoris commited on

create Geneformer model card
453894a

Christina Theodoris commited on

upload training args for Geneformer 6L-30M
4cfe5a6

Christina Theodoris commited on

upload Geneformer 6L-30M config
c45a71b

Christina Theodoris commited on

upload Geneformer 6L-30M
3c8dcdc

Christina Theodoris commited on

initial commit
c6d4a49

Christina Theodoris commited on