madhavanvenkatesh commited on
Commit
5539d14
1 Parent(s): a021deb

pointing dictionaries from the mtl module's init

Browse files

could possibly modify init from the geneformer (geneformer/__init__.py) to work with the geneformer/mtl/__init__.py

Files changed (1) hide show
  1. geneformer/mtl/collators.py +3 -3
geneformer/mtl/collators.py CHANGED
@@ -1,18 +1,18 @@
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  # imports
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  import torch
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-
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  from ..collator_for_classification import DataCollatorForGeneClassification
 
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  """
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  Geneformer collator for multi-task cell classification.
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  """
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-
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  class DataCollatorForMultitaskCellClassification(DataCollatorForGeneClassification):
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  class_type = "cell"
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  def __init__(self, *args, **kwargs) -> None:
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- super().__init__(*args, **kwargs)
 
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  def _prepare_batch(self, features):
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  # Process inputs as usual
 
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  # imports
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  import torch
 
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  from ..collator_for_classification import DataCollatorForGeneClassification
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+ from . import TOKEN_DICTIONARY # import the token dictionary from the mtl module's init
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  """
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  Geneformer collator for multi-task cell classification.
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  """
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  class DataCollatorForMultitaskCellClassification(DataCollatorForGeneClassification):
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  class_type = "cell"
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  def __init__(self, *args, **kwargs) -> None:
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+ # Use the loaded token dictionary from the mtl module's init
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+ super().__init__(token_dictionary=TOKEN_DICTIONARY, *args, **kwargs)
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  def _prepare_batch(self, features):
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  # Process inputs as usual