vijay_update_model (#2)

- Restructure drug-combo-extraction model (e064b48c54792b326a8719e004b2db8ff20b4dac)
- Add raw model files (429dbb4412f88c0b5f878c08ea1222f2bbaa5869)
- Add model.chkpt (2bb541e3ed22c2d19a76bff6bc5ff4c94700e7fc)
- Untrack model.chkpt (e512424bc0d8cf37064ea1372af747e3b5b73a78)
- Track model.chkpt (49f9e66fd7b793ec7110a236a8cef8cee1d25754)

.gitattributes

@@ -25,3 +25,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zstandard filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+model.chkpt filter=lfs diff=lfs merge=lfs -text

config.json

@@ -0,0 +1,26 @@
+{
+  "_name_or_path": "allenai/drug_combinations_lm_pubmedbert",
+  "architectures": [
+    "BertForRelation"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "torch_dtype": "float32",
+  "transformers_version": "4.7.0",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30524
+}

continued_pretraining_directory_pubmedbert_10_epochs.tgz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:5c7ce9b57b61dcc53cf5a690deddb1d9ce292dc953b6638630fdc16a971f6f5e
-size 1627460828

metadata.json

@@ -0,0 +1 @@
+{"model_name": "allenai/drug_combinations_lm_pubmedbert", "max_seq_length": 512, "num_labels": 3, "label2idx": {"POS": 2, "COMB": 1, "NEG": 1, "NO_COMB": 0}, "add_no_combination_relations": true, "only_include_binary_no_comb_relations": false, "include_paragraph_context": true, "context_window_size": 400}

checkpoints_pubmedbert_cpt_2021_three_class.tgz → pytorch_model.bin

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:099e714eee3187f5ca333246281eb37bb113e1f9a5ce3b9be046057f6bbe8093
-size 938169031
+oid sha256:425517163bc454329a05e676e7b1a509849584d03e1ba0df37b31a65ecae7519
+size 438032361