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--- |
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license: apache-2.0 |
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tags: |
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- generated_from_trainer |
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metrics: |
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- precision |
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- recall |
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- f1 |
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- accuracy |
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model-index: |
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- name: roberta-base-biomedical-clinical-es-finetuned-ner-CRAFT |
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results: [] |
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--- |
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You |
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should probably proofread and complete it, then remove this comment. --> |
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# roberta-base-biomedical-clinical-es-finetuned-ner-CRAFT |
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This model is a fine-tuned version of [PlanTL-GOB-ES/roberta-base-biomedical-clinical-es](https://huggingface.co/PlanTL-GOB-ES/roberta-base-biomedical-clinical-es) on the CRAFT dataset. |
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It achieves the following results on the evaluation set: |
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- Loss: 0.1720 |
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- Precision: 0.8253 |
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- Recall: 0.8147 |
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- F1: 0.8200 |
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- Accuracy: 0.9660 |
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## Model description |
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This model performs Named Entity Recognition for 6 entity tags: Sequence, Cell, Protein, Gene, Taxon, and Chemical from the [CRAFT](https://github.com/UCDenver-ccp/CRAFT/releases)(Colorado Richly Annotated Full Text) Corpus in English. |
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Entity tags have been normalized and replaced from the original three letter code to a full name e.g. B-Protein, I-Chemical. |
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## Intended uses & limitations |
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More information needed |
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## Training and evaluation data |
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More information needed |
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## Training procedure |
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### Training hyperparameters |
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The following hyperparameters were used during training: |
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- learning_rate: 3e-05 |
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- train_batch_size: 8 |
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- eval_batch_size: 8 |
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- seed: 42 |
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08 |
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- lr_scheduler_type: linear |
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- num_epochs: 4 |
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### Training results |
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy | |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:| |
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| 0.1133 | 1.0 | 1360 | 0.1629 | 0.7985 | 0.7782 | 0.7882 | 0.9610 | |
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| 0.049 | 2.0 | 2720 | 0.1530 | 0.8165 | 0.8084 | 0.8124 | 0.9651 | |
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| 0.0306 | 3.0 | 4080 | 0.1603 | 0.8198 | 0.8075 | 0.8136 | 0.9650 | |
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| 0.0158 | 4.0 | 5440 | 0.1720 | 0.8253 | 0.8147 | 0.8200 | 0.9660 | |
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### Framework versions |
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- Transformers 4.16.2 |
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- Pytorch 1.10.0+cu111 |
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- Datasets 1.18.3 |
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- Tokenizers 0.11.6 |
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