README.md

metadata

language: []
library_name: sentence-transformers
tags:
  - sentence-transformers
  - sentence-similarity
  - feature-extraction
  - generated_from_trainer
  - loss:MultipleNegativesRankingLoss
base_model: sentence-transformers/all-mpnet-base-v2
datasets: []
widget:
  - source_sentence: clinician thinks the patient is homeless
    sentences:
      - '- Ms. ___ was homeless at the time of this admission.'
      - >-
        This is ___ year old single homeless woman, previously diagnosed with
        borderline personality disorder with chronic affective instability,
        reactive mood, impulsivity, SIB (ingesting objects while hospitalized),
        recently discharged from ___ on ___, ___ client, who presented to ___ on
        a ___ with worsening mood, threats of suicide via cutting her legs off,
        as well as thoughts of wanting to hurt _
      - >-
        Patient reports that her apartment is bugged, she has camera in her
        television, and a helicopter is reading minds.
  - source_sentence: assigned a case manager for housing
    sentences:
      - 'Home With Service Facility:'
      - >-
        We consulted social work, psychiatry, and the case managers, who are
        working with the hospital attorneys to acquire safer housing options
        with greater oversight from health care professionals. .
      - Has not established care with
  - source_sentence: has been homeless
    sentences:
      - He reports being homeless, living in an empty garage near his sister.
      - >-
        To complicate matters, patient's main support/roommate will be moving
        out of country soon, so he will no longer be able to live in his
        apartment.
      - 'Axis IV: homelessness'
  - source_sentence: homelessness
    sentences:
      - >-
        Does not identify any acute stressors, but describes no longer being
        able to tolerate being homeless (lack of food/clothing/showers).
      - >-
        Unclear how reliable his group home is administering meds, notably
        nursing is quite limited.
      - >-
        Case management assisted in formulated a plan with ___ that would allow
        the patient's ___ be the first responder when issues regarding her these
        two problems arise.
  - source_sentence: assisted…housing benefits
    sentences:
      - As a result, patient is currently homeless.
      - 'Home With Service Facility:'
      - Patient with multiple admissions in the past several months, homeless.
pipeline_tag: sentence-similarity

SentenceTransformer (all-mpnet-base-v2) fine-tuned using clinical naatives

This is a sentence-transformers model finetuned from sentence-transformers/all-mpnet-base-v2. It maps sentences & paragraphs to a 768-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.

Model Details

Model Description

• Model Type: Sentence Transformer
• Base model: sentence-transformers/all-mpnet-base-v2
• Maximum Sequence Length: 384 tokens
• Output Dimensionality: 768 tokens
• Similarity Function: Cosine Similarity

Full Model Architecture

SentenceTransformer(
  (0): Transformer({'max_seq_length': 384, 'do_lower_case': False}) with Transformer model: MPNetModel 
  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
  (2): Normalize()
)

Usage

Direct Usage (Sentence Transformers)

First install the Sentence Transformers library:

pip install -U sentence-transformers

Then you can load this model and run inference.

from sentence_transformers import SentenceTransformer

# Download from the 🤗 Hub
model = SentenceTransformer("Shobhank-iiitdwd/Clinical_sentence_transformers_mpnet_base_v2")
# Run inference
sentences = [
    'assisted…housing benefits',
    'Home With Service Facility:',
    'Patient with multiple admissions in the past several months, homeless.',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 768]

# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [3, 3]

Training Details

Training Dataset

Unnamed Dataset

Training Hyperparameters

Non-Default Hyperparameters

• per_device_train_batch_size: 64
• per_device_eval_batch_size: 64
• num_train_epochs: 100
• multi_dataset_batch_sampler: round_robin

All Hyperparameters

Click to expand

• overwrite_output_dir: False
• do_predict: False
• eval_strategy: no
• prediction_loss_only: True
• per_device_train_batch_size: 64
• per_device_eval_batch_size: 64
• per_gpu_train_batch_size: None
• per_gpu_eval_batch_size: None
• gradient_accumulation_steps: 1
• eval_accumulation_steps: None
• learning_rate: 5e-05
• weight_decay: 0.0
• adam_beta1: 0.9
• adam_beta2: 0.999
• adam_epsilon: 1e-08
• max_grad_norm: 1
• num_train_epochs: 100
• max_steps: -1
• lr_scheduler_type: linear
• lr_scheduler_kwargs: {}
• warmup_ratio: 0.0
• warmup_steps: 0
• log_level: passive
• log_level_replica: warning
• log_on_each_node: True
• logging_nan_inf_filter: True
• save_safetensors: True
• save_on_each_node: False
• save_only_model: False
• restore_callback_states_from_checkpoint: False
• no_cuda: False
• use_cpu: False
• use_mps_device: False
• seed: 42
• data_seed: None
• jit_mode_eval: False
• use_ipex: False
• bf16: False
• fp16: False
• fp16_opt_level: O1
• half_precision_backend: auto
• bf16_full_eval: False
• fp16_full_eval: False
• tf32: None
• local_rank: 0
• ddp_backend: None
• tpu_num_cores: None
• tpu_metrics_debug: False
• debug: []
• dataloader_drop_last: False
• dataloader_num_workers: 0
• dataloader_prefetch_factor: None
• past_index: -1
• disable_tqdm: False
• remove_unused_columns: True
• label_names: None
• load_best_model_at_end: False
• ignore_data_skip: False
• fsdp: []
• fsdp_min_num_params: 0
• fsdp_config: {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}
• fsdp_transformer_layer_cls_to_wrap: None
• accelerator_config: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}
• deepspeed: None
• label_smoothing_factor: 0.0
• optim: adamw_torch
• optim_args: None
• adafactor: False
• group_by_length: False
• length_column_name: length
• ddp_find_unused_parameters: None
• ddp_bucket_cap_mb: None
• ddp_broadcast_buffers: False
• dataloader_pin_memory: True
• dataloader_persistent_workers: False
• skip_memory_metrics: True
• use_legacy_prediction_loop: False
• push_to_hub: False
• resume_from_checkpoint: None
• hub_model_id: None
• hub_strategy: every_save
• hub_private_repo: False
• hub_always_push: False
• gradient_checkpointing: False
• gradient_checkpointing_kwargs: None
• include_inputs_for_metrics: False
• eval_do_concat_batches: True
• fp16_backend: auto
• push_to_hub_model_id: None
• push_to_hub_organization: None
• mp_parameters:
• auto_find_batch_size: False
• full_determinism: False
• torchdynamo: None
• ray_scope: last
• ddp_timeout: 1800
• torch_compile: False
• torch_compile_backend: None
• torch_compile_mode: None
• dispatch_batches: None
• split_batches: None
• include_tokens_per_second: False
• include_num_input_tokens_seen: False
• neftune_noise_alpha: None
• optim_target_modules: None
• batch_eval_metrics: False
• batch_sampler: batch_sampler
• multi_dataset_batch_sampler: round_robin

Training Logs

Click to expand

Epoch	Step	Training Loss
0.6887	500	3.5133
1.3774	1000	3.2727
2.0661	1500	3.2238
2.7548	2000	3.1758
3.4435	2500	3.1582
4.1322	3000	3.1385
4.8209	3500	3.1155
5.5096	4000	3.1034
6.1983	4500	3.091
6.8871	5000	3.0768
7.5758	5500	3.065
8.2645	6000	3.0632
8.9532	6500	3.0566
9.6419	7000	3.0433
0.6887	500	3.0536
1.3774	1000	3.0608
2.0661	1500	3.0631
2.7548	2000	3.0644
3.4435	2500	3.0667
4.1322	3000	3.07
4.8209	3500	3.0682
5.5096	4000	3.0718
6.1983	4500	3.0719
6.8871	5000	3.0685
7.5758	5500	3.0723
8.2645	6000	3.0681
8.9532	6500	3.0633
9.6419	7000	3.0642
10.3306	7500	3.0511
11.0193	8000	3.0463
11.7080	8500	3.0301
12.3967	9000	3.0163
13.0854	9500	3.0059
13.7741	10000	2.9845
14.4628	10500	2.9705
15.1515	11000	2.9536
15.8402	11500	2.9263
16.5289	12000	2.9199
17.2176	12500	2.8989
17.9063	13000	2.8818
18.5950	13500	2.8735
19.2837	14000	2.852
19.9725	14500	2.8315
20.6612	15000	2.8095
21.3499	15500	2.7965
22.0386	16000	2.7802
22.7273	16500	2.7527
23.4160	17000	2.7547
24.1047	17500	2.7377
24.7934	18000	2.7035
25.4821	18500	2.7102
26.1708	19000	2.6997
26.8595	19500	2.6548
27.5482	20000	2.6704
28.2369	20500	2.6624
28.9256	21000	2.6306
29.6143	21500	2.6358
30.3030	22000	2.634
30.9917	22500	2.6089
31.6804	23000	2.607
32.3691	23500	2.6246
33.0579	24000	2.5947
33.7466	24500	2.5798
34.4353	25000	2.6025
35.1240	25500	2.5824
35.8127	26000	2.5698
36.5014	26500	2.5711
37.1901	27000	2.5636
37.8788	27500	2.5387
38.5675	28000	2.5472
39.2562	28500	2.5455
39.9449	29000	2.5204
40.6336	29500	2.524
41.3223	30000	2.5246
42.0110	30500	2.5125
42.6997	31000	2.5042
43.3884	31500	2.5165
44.0771	32000	2.5187
44.7658	32500	2.4975
45.4545	33000	2.5048
46.1433	33500	2.521
46.8320	34000	2.4825
47.5207	34500	2.5034
48.2094	35000	2.5049
48.8981	35500	2.4886
49.5868	36000	2.4992
50.2755	36500	2.5099
50.9642	37000	2.489
51.6529	37500	2.4825
52.3416	38000	2.4902
53.0303	38500	2.4815
53.7190	39000	2.4723
54.4077	39500	2.4921
55.0964	40000	2.4763
55.7851	40500	2.4692
56.4738	41000	2.4831
57.1625	41500	2.4705
57.8512	42000	2.4659
58.5399	42500	2.4804
59.2287	43000	2.4582
59.9174	43500	2.4544
60.6061	44000	2.4712
61.2948	44500	2.4478
61.9835	45000	2.4428
62.6722	45500	2.4558
63.3609	46000	2.4428
64.0496	46500	2.4399
64.7383	47000	2.4529
65.4270	47500	2.4374
66.1157	48000	2.4543
66.8044	48500	2.4576
67.4931	49000	2.4426
68.1818	49500	2.4698
68.8705	50000	2.4604
69.5592	50500	2.4515
70.2479	51000	2.4804
70.9366	51500	2.4545
71.6253	52000	2.4523
72.3140	52500	2.4756
73.0028	53000	2.4697
73.6915	53500	2.4536
74.3802	54000	2.4866
75.0689	54500	2.471
75.7576	55000	2.483
76.4463	55500	2.5002
77.1350	56000	2.4849
77.8237	56500	2.4848
78.5124	57000	2.5047
79.2011	57500	2.5143
79.8898	58000	2.4879
80.5785	58500	2.5093
81.2672	59000	2.5247
81.9559	59500	2.4915
82.6446	60000	2.5124
83.3333	60500	2.5056
84.0220	61000	2.4767
84.7107	61500	2.5068
85.3994	62000	2.5173
86.0882	62500	2.4911
86.7769	63000	2.526
87.4656	63500	2.5313
88.1543	64000	2.5312
88.8430	64500	2.5735
89.5317	65000	2.5873
90.2204	65500	2.6395
90.9091	66000	2.7914
91.5978	66500	2.6729
92.2865	67000	2.9846
92.9752	67500	2.9259
93.6639	68000	2.8845
94.3526	68500	2.9906
95.0413	69000	2.9534
95.7300	69500	2.9857
96.4187	70000	3.0559
97.1074	70500	2.9919
97.7961	71000	3.0435
98.4848	71500	3.0534
99.1736	72000	3.0169
99.8623	72500	3.0264

Framework Versions

• Python: 3.10.11
• Sentence Transformers: 3.0.1
• Transformers: 4.41.2
• PyTorch: 2.0.1
• Accelerate: 0.31.0
• Datasets: 2.19.1
• Tokenizers: 0.19.1