BiomarkerNER / README.md
Postlyt's picture
Upload 7 files
db356e3 verified

BioBBC BiLSTM-CRF (epoch 3)

This checkpoint contains:

  • pytorch_model.bin: state dict for the EmbeddingFusion → BiLSTM → Linear → CRF model
  • embedding_config.json: hyperparams for embedder/backbone
  • id2label.json, pos2id.json, char_vocab.json
  • tokenizer/ (if provided)

Base encoder: microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract Labels: 3 classes Notes: Requires Flair TransformerWordEmbeddings with the same base model for word-level flair features.