genggui001
commited on
Commit
•
de4e5fb
1
Parent(s):
351a3b2
First model version
Browse files- .gitattributes +1 -0
- README.md +104 -0
- config.json +33 -0
- generation_config.json +7 -0
- pytorch_model-00001-of-00002.bin +3 -0
- pytorch_model-00002-of-00002.bin +3 -0
- pytorch_model.bin.index.json +373 -0
- special_tokens_map.json +10 -0
- tokenizer.json +3 -0
- tokenizer_config.json +16 -0
.gitattributes
CHANGED
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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tokenizer.json filter=lfs diff=lfs merge=lfs -text
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README.md
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@@ -0,0 +1,104 @@
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# PULSE
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[![Code License](https://img.shields.io/badge/Code%20License-Apache_2.0-brightgreen.svg)](./LICENSE)
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[![Model License](https://img.shields.io/badge/Model%20License-GNU%20AGPL%203.0-red.svg)](./MODEL_LICENSE)
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## 目录
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- [开源模型](#开源模型)
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- [模型介绍](#模型介绍)
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- [局限性](#局限性)
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- [Elo评测](#Elo评测)
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- [推理](#推理)
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- [硬件要求](#硬件要求)
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- [下载安装](#下载安装)
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- [使用示例](#使用示例)
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- [致谢](#致谢)
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- [开源协议](#开源协议)
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----
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## 开源模型
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- [**PULSE-7bv5**](https://huggingface.co/OpenMEDLab/PULSE-7bv5)
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## 模型介绍
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- **大规模训练**:PULSE模型在OpenChineseLLaMA 13B模型的基础上,
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使用约4,000,000个医学领域和通用领域的SFT数据进行进一步微调。
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- **全面的医学自然语言处理任务**:PULSE支持医学领域的各种自然语
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言处理任务,包括健康教育、医师考试问题、报告解读、医疗记录结构化
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以及模拟诊断和治疗。
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### 局限性
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由于模型参数量较小和自回归生成范式,尽管模型提供了有关疾病诊断和治疗的推理结果,但这些结果不能代替线下职业医生的建议和治疗方案。所有回答仅供参考,不应作为诊断或治疗的依据。我们强烈建议用户在需要诊断或治疗疾病时,寻求专业医生的帮助和建议。
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### Elo评测
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| model_name | model_size | MedQA_Mainland | PromptCBLUE | med_detailed_answer | webMedQA | ALL |
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|:-------------|:-------------|-----------------:|--------------:|----------------------:|-----------:|--------:|
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| GPT4 | 220B*8(?) | 1118.20 | 1166.39 | 1122.20 | 1132.74 | 1243.79 |
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| ChatGPT | 175B(?) | 1083.05 | 1102.31 | 1098.38 | 1097.88 | 1149.38 |
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| PULSE_14bv5 | 14B | 1003.55 | 1055.56 | 1074.79 | 1074.28 | 1114.23 |
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| PULSE_7bv5 | 7B | 1047.35 | 1047.27 | 1029.37 | 1069.40 | 1084.18 |
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| QiZhenGPT | 13B | 952.66 | 929.56 | 1076.41 | 1006.85 | 979.94 |
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| BianQue | 6B | 927.86 | 922.65 | 1050.22 | 1042.64 | 959.35 |
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| Med-ChatGLM | 6B | 989.59 | 928.77 | 882.08 | 856.66 | 869.54 |
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| BenTsao | 7B | 954.20 | 933.39 | 815.51 | 856.20 | 809.13 |
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| DoctorGLM | 6B | 923.54 | 914.10 | 851.04 | 863.35 | 790.47 |
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## 推理
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### 硬件要求
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下表提供了一个batch size=1时本地部署PULSE进行推理所需的显存大小。
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| 量化等级 | 加载模型 |
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| -------- | -------- |
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| FP16 | 14GB |
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### 下载安装
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1. 下载本仓库内容至本地/远程服务器
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```bash
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git clone https://github.com/openmedlab/PULSE
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cd PULSE
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```
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2. 创建conda环境安装依赖
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```bash
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conda env create -f llm.yml
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conda activate llm
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```
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其中`torch`和`transformers`版本不建议低于推荐版本。
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### 使用示例
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#### 网页Demo
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**Gradio**
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```bash
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python web_demo_gradio.py
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```
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#### 命令行Demo
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您可以运行仓库中的`cli_demo.py`来启动一个简单的命令行Demo:
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```bash
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python cli_demo.py
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```
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## 致谢
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- 上海人工智能实验室
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- 上海交通大学-清源研究院
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- 华东理工大学-自然语言处理与大数据挖掘实验室
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## 开源协议
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本项目所含代码采用[Apache 2.0](https://github.com/openmedlab/PULSE/blob/main/LICENSE)协议,模型权重采用[GNU AGPL 3.0](https://github.com/openmedlab/PULSE/blob/main/MODEL_LICENSE)协议。如使用本项目所含模型及其修改版本提供服务产生误导性或有害性言论,造成不良影响,由服务提供方负责,与本项目无关。
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config.json
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{
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"_name_or_path": "bigscience/bloomz-7b1-mt",
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"apply_residual_connection_post_layernorm": false,
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"architectures": [
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"BloomForCausalLM"
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],
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"attention_dropout": 0.0,
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"attention_softmax_in_fp32": true,
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"bias_dropout_fusion": true,
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"bos_token_id": 1,
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"eos_token_id": 2,
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"hidden_dropout": 0.0,
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"hidden_size": 4096,
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"initializer_range": 0.02,
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"layer_norm_epsilon": 1e-05,
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"masked_softmax_fusion": true,
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"model_type": "bloom",
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"n_head": 32,
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"n_inner": null,
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"n_layer": 30,
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"offset_alibi": 100,
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"pad_token_id": 3,
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"pretraining_tp": 4,
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"seq_length": 2048,
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"skip_bias_add": true,
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"skip_bias_add_qkv": false,
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"slow_but_exact": false,
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"torch_dtype": "bfloat16",
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"transformers_version": "4.26.0",
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"unk_token_id": 0,
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"use_cache": true,
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"vocab_size": 250880
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}
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generation_config.json
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{
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"_from_model_config": true,
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"bos_token_id": 1,
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"eos_token_id": 2,
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"pad_token_id": 3,
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"transformers_version": "4.26.0"
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}
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pytorch_model-00001-of-00002.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:87dcddc1af884448799cdc497f9419dba05b675a647eb805ebb41028305789b8
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size 9976271655
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pytorch_model-00002-of-00002.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:46fd33900a580ad9124e3283282838d36115858da5c42564d894b3602e609f13
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size 6217088067
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pytorch_model.bin.index.json
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{
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"metadata": {
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"total_size": 16193241088
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},
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"weight_map": {
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"lm_head.weight": "pytorch_model-00002-of-00002.bin",
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"transformer.h.0.mlp.dense_h_to_4h.weight": "pytorch_model-00001-of-00002.bin",
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"transformer.h.0.post_attention_layernorm.bias": "pytorch_model-00001-of-00002.bin",
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"transformer.h.0.post_attention_layernorm.weight": "pytorch_model-00001-of-00002.bin",
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"transformer.h.0.self_attention.dense.bias": "pytorch_model-00001-of-00002.bin",
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"transformer.h.0.self_attention.dense.weight": "pytorch_model-00001-of-00002.bin",
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"transformer.h.0.self_attention.query_key_value.bias": "pytorch_model-00001-of-00002.bin",
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"transformer.h.9.input_layernorm.weight": "pytorch_model-00001-of-00002.bin",
|
357 |
+
"transformer.h.9.mlp.dense_4h_to_h.bias": "pytorch_model-00001-of-00002.bin",
|
358 |
+
"transformer.h.9.mlp.dense_4h_to_h.weight": "pytorch_model-00001-of-00002.bin",
|
359 |
+
"transformer.h.9.mlp.dense_h_to_4h.bias": "pytorch_model-00001-of-00002.bin",
|
360 |
+
"transformer.h.9.mlp.dense_h_to_4h.weight": "pytorch_model-00001-of-00002.bin",
|
361 |
+
"transformer.h.9.post_attention_layernorm.bias": "pytorch_model-00001-of-00002.bin",
|
362 |
+
"transformer.h.9.post_attention_layernorm.weight": "pytorch_model-00001-of-00002.bin",
|
363 |
+
"transformer.h.9.self_attention.dense.bias": "pytorch_model-00001-of-00002.bin",
|
364 |
+
"transformer.h.9.self_attention.dense.weight": "pytorch_model-00001-of-00002.bin",
|
365 |
+
"transformer.h.9.self_attention.query_key_value.bias": "pytorch_model-00001-of-00002.bin",
|
366 |
+
"transformer.h.9.self_attention.query_key_value.weight": "pytorch_model-00001-of-00002.bin",
|
367 |
+
"transformer.ln_f.bias": "pytorch_model-00002-of-00002.bin",
|
368 |
+
"transformer.ln_f.weight": "pytorch_model-00002-of-00002.bin",
|
369 |
+
"transformer.word_embeddings.weight": "pytorch_model-00001-of-00002.bin",
|
370 |
+
"transformer.word_embeddings_layernorm.bias": "pytorch_model-00001-of-00002.bin",
|
371 |
+
"transformer.word_embeddings_layernorm.weight": "pytorch_model-00001-of-00002.bin"
|
372 |
+
}
|
373 |
+
}
|
special_tokens_map.json
ADDED
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"additional_special_tokens": [
|
3 |
+
"<|modelname|>",
|
4 |
+
"<|modelorg|>"
|
5 |
+
],
|
6 |
+
"bos_token": "<s>",
|
7 |
+
"eos_token": "</s>",
|
8 |
+
"pad_token": "<pad>",
|
9 |
+
"unk_token": "<unk>"
|
10 |
+
}
|
tokenizer.json
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:2e4b2cb5b01bf5e248565d488a5d338de2cf2e91ae49045f1528c7a38568eaa9
|
3 |
+
size 14500822
|
tokenizer_config.json
ADDED
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"add_prefix_space": false,
|
3 |
+
"additional_special_tokens": [
|
4 |
+
"<|modelname|>",
|
5 |
+
"<|modelorg|>"
|
6 |
+
],
|
7 |
+
"bos_token": "<s>",
|
8 |
+
"eos_token": "</s>",
|
9 |
+
"model_max_length": 1000000000000000019884624838656,
|
10 |
+
"name_or_path": "bigscience/bloom",
|
11 |
+
"pad_token": "<pad>",
|
12 |
+
"padding_side": "left",
|
13 |
+
"special_tokens_map_file": null,
|
14 |
+
"tokenizer_class": "BloomTokenizer",
|
15 |
+
"unk_token": "<unk>"
|
16 |
+
}
|