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README.md
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@@ -41,7 +41,8 @@ the `rescaling_factor` of the Rotary Embedding layer in the esm model `num_dna_
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(i.e 6669 for a sequence of 40008 base pairs) and `max_num_tokens_nt` is the max number of tokens on which the backbone nucleotide-transformer was trained on, i.e `2048`.
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[![Open All Collab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/#fileId=https%3A//huggingface.co/InstaDeepAI/segment_nt/blob/main/inference_segment_nt.ipynb)
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The `./inference_segment_nt.ipynb` can be run in Google Colab by clicking on the icon and shows how to
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```python
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# Load model and tokenizer
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(i.e 6669 for a sequence of 40008 base pairs) and `max_num_tokens_nt` is the max number of tokens on which the backbone nucleotide-transformer was trained on, i.e `2048`.
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[![Open All Collab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/#fileId=https%3A//huggingface.co/InstaDeepAI/segment_nt/blob/main/inference_segment_nt.ipynb)
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The `./inference_segment_nt.ipynb` can be run in Google Colab by clicking on the icon and shows how to handle inference on sequence lengths require changing
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the rescaling factor and sequence lengths that do not. One can run the notebook and reproduce Fig.1 and Fig.3 from the SegmentNT paper.
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```python
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# Load model and tokenizer
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