Upload 16 files
Browse files- .gitattributes +3 -0
- SNIM16 (Fig S6)/FIVE_metadata.json +250 -0
- SNIM16 (Fig S6)/KSM/keras_metadata.pb +3 -0
- SNIM16 (Fig S6)/KSM/saved_model.pb +3 -0
- SNIM16 (Fig S6)/KSM/variables/variables.data-00000-of-00001 +3 -0
- SNIM16 (Fig S6)/KSM/variables/variables.index +0 -0
- SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4 flt_18 iRt_1.5 ds__270_ nE_169 bSz_64 bNm_0 i_22.txt +0 -0
- SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4.pb +3 -0
- SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4.pb.png +3 -0
- SNIM20 CNNAr (FigS8 a)/FIVE_metadata.json +319 -0
- SNIM20 CNNAr (FigS8 a)/KSM/keras_metadata.pb +3 -0
- SNIM20 CNNAr (FigS8 a)/KSM/saved_model.pb +3 -0
- SNIM20 CNNAr (FigS8 a)/KSM/variables/variables.data-00000-of-00001 +3 -0
- SNIM20 CNNAr (FigS8 a)/KSM/variables/variables.index +0 -0
- SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs.onnx +3 -0
- SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs.pb +3 -0
- SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs_7 kn_2 flt_20 iRt_1.75 ds__471, 46, 31_ nE_53,256 bSz_64 bNm_1 i_112.txt +0 -0
.gitattributes
CHANGED
@@ -36,3 +36,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
|
36 |
SNIM20[[:space:]](Fig[[:space:]]2,[[:space:]]3,[[:space:]]S5,[[:space:]]S6)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
37 |
SNIM20[[:space:]]BFOnly[[:space:]](Fig4d,[[:space:]]FigS7d)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
38 |
SNIM20[[:space:]]BFOnly[[:space:]](FigS7c)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
36 |
SNIM20[[:space:]](Fig[[:space:]]2,[[:space:]]3,[[:space:]]S5,[[:space:]]S6)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
37 |
SNIM20[[:space:]]BFOnly[[:space:]](Fig4d,[[:space:]]FigS7d)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
38 |
SNIM20[[:space:]]BFOnly[[:space:]](FigS7c)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
39 |
+
SNIM16[[:space:]](Fig[[:space:]]S6)/acc_0.7969[[:space:]]CNN_AC_R[[:space:]]CNNs_7[[:space:]]kn_4.pb.png filter=lfs diff=lfs merge=lfs -text
|
40 |
+
SNIM16[[:space:]](Fig[[:space:]]S6)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
41 |
+
SNIM20[[:space:]]CNNAr[[:space:]](FigS8[[:space:]]a)/KSM/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
|
SNIM16 (Fig S6)/FIVE_metadata.json
ADDED
@@ -0,0 +1,250 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"Index2ClassInfo": {
|
3 |
+
"0": {
|
4 |
+
"Index": 0,
|
5 |
+
"Name": "0 Empty",
|
6 |
+
"TrainingCount": 100,
|
7 |
+
"RGB": [
|
8 |
+
188,
|
9 |
+
220,
|
10 |
+
12
|
11 |
+
],
|
12 |
+
"Ignore": true,
|
13 |
+
"Comment": "",
|
14 |
+
"ThresholdMultiplier": 1,
|
15 |
+
"ScalerMin": 0,
|
16 |
+
"ScalerMax": 1
|
17 |
+
},
|
18 |
+
"1": {
|
19 |
+
"Index": 1,
|
20 |
+
"Name": "0 Neurites No Cell",
|
21 |
+
"TrainingCount": 125,
|
22 |
+
"RGB": [
|
23 |
+
243,
|
24 |
+
206,
|
25 |
+
219
|
26 |
+
],
|
27 |
+
"Ignore": true,
|
28 |
+
"Comment": "",
|
29 |
+
"ThresholdMultiplier": 1,
|
30 |
+
"ScalerMin": 0,
|
31 |
+
"ScalerMax": 1
|
32 |
+
},
|
33 |
+
"2": {
|
34 |
+
"Index": 2,
|
35 |
+
"Name": "1 Cell Tub No Neurite",
|
36 |
+
"TrainingCount": 139,
|
37 |
+
"RGB": [
|
38 |
+
172,
|
39 |
+
174,
|
40 |
+
131
|
41 |
+
],
|
42 |
+
"Ignore": false,
|
43 |
+
"Comment": "",
|
44 |
+
"ThresholdMultiplier": 1,
|
45 |
+
"ScalerMin": 0,
|
46 |
+
"ScalerMax": 1
|
47 |
+
},
|
48 |
+
"3": {
|
49 |
+
"Index": 3,
|
50 |
+
"Name": "1 Dead (no tubulin)",
|
51 |
+
"TrainingCount": 31,
|
52 |
+
"RGB": [
|
53 |
+
22,
|
54 |
+
49,
|
55 |
+
220
|
56 |
+
],
|
57 |
+
"Ignore": false,
|
58 |
+
"Comment": "",
|
59 |
+
"ThresholdMultiplier": 1,
|
60 |
+
"ScalerMin": 0,
|
61 |
+
"ScalerMax": 1
|
62 |
+
},
|
63 |
+
"4": {
|
64 |
+
"Index": 4,
|
65 |
+
"Name": "1 Neuron",
|
66 |
+
"TrainingCount": 185,
|
67 |
+
"RGB": [
|
68 |
+
52,
|
69 |
+
56,
|
70 |
+
235
|
71 |
+
],
|
72 |
+
"Ignore": false,
|
73 |
+
"Comment": "",
|
74 |
+
"ThresholdMultiplier": 1,
|
75 |
+
"ScalerMin": 0,
|
76 |
+
"ScalerMax": 1
|
77 |
+
},
|
78 |
+
"5": {
|
79 |
+
"Index": 5,
|
80 |
+
"Name": "1 Neuron Poor Qual",
|
81 |
+
"TrainingCount": 69,
|
82 |
+
"RGB": [
|
83 |
+
12,
|
84 |
+
27,
|
85 |
+
95
|
86 |
+
],
|
87 |
+
"Ignore": false,
|
88 |
+
"Comment": "",
|
89 |
+
"ThresholdMultiplier": 1,
|
90 |
+
"ScalerMin": 0,
|
91 |
+
"ScalerMax": 1
|
92 |
+
},
|
93 |
+
"6": {
|
94 |
+
"Index": 6,
|
95 |
+
"Name": "1 Neuron Very Short",
|
96 |
+
"TrainingCount": 8,
|
97 |
+
"RGB": [
|
98 |
+
47,
|
99 |
+
24,
|
100 |
+
229
|
101 |
+
],
|
102 |
+
"Ignore": false,
|
103 |
+
"Comment": "",
|
104 |
+
"ThresholdMultiplier": 1,
|
105 |
+
"ScalerMin": 0,
|
106 |
+
"ScalerMax": 1
|
107 |
+
},
|
108 |
+
"7": {
|
109 |
+
"Index": 7,
|
110 |
+
"Name": "2 Nuc 1 Neuron",
|
111 |
+
"TrainingCount": 17,
|
112 |
+
"RGB": [
|
113 |
+
24,
|
114 |
+
65,
|
115 |
+
3
|
116 |
+
],
|
117 |
+
"Ignore": false,
|
118 |
+
"Comment": "",
|
119 |
+
"ThresholdMultiplier": 1,
|
120 |
+
"ScalerMin": 0,
|
121 |
+
"ScalerMax": 1
|
122 |
+
},
|
123 |
+
"8": {
|
124 |
+
"Index": 8,
|
125 |
+
"Name": "2 Nuc 1 Soma",
|
126 |
+
"TrainingCount": 11,
|
127 |
+
"RGB": [
|
128 |
+
164,
|
129 |
+
11,
|
130 |
+
13
|
131 |
+
],
|
132 |
+
"Ignore": false,
|
133 |
+
"Comment": "",
|
134 |
+
"ThresholdMultiplier": 1,
|
135 |
+
"ScalerMin": 0,
|
136 |
+
"ScalerMax": 1
|
137 |
+
},
|
138 |
+
"9": {
|
139 |
+
"Index": 9,
|
140 |
+
"Name": "2 Nuc 1+ Neuron Poor Qual",
|
141 |
+
"TrainingCount": 23,
|
142 |
+
"RGB": [
|
143 |
+
88,
|
144 |
+
28,
|
145 |
+
101
|
146 |
+
],
|
147 |
+
"Ignore": false,
|
148 |
+
"Comment": "",
|
149 |
+
"ThresholdMultiplier": 1,
|
150 |
+
"ScalerMin": 0,
|
151 |
+
"ScalerMax": 1
|
152 |
+
},
|
153 |
+
"10": {
|
154 |
+
"Index": 10,
|
155 |
+
"Name": "2 Nuc 2 Neurons",
|
156 |
+
"TrainingCount": 20,
|
157 |
+
"RGB": [
|
158 |
+
105,
|
159 |
+
230,
|
160 |
+
83
|
161 |
+
],
|
162 |
+
"Ignore": false,
|
163 |
+
"Comment": "",
|
164 |
+
"ThresholdMultiplier": 1,
|
165 |
+
"ScalerMin": 0,
|
166 |
+
"ScalerMax": 1
|
167 |
+
},
|
168 |
+
"11": {
|
169 |
+
"Index": 11,
|
170 |
+
"Name": "2 Nuc Dead",
|
171 |
+
"TrainingCount": 8,
|
172 |
+
"RGB": [
|
173 |
+
157,
|
174 |
+
217,
|
175 |
+
104
|
176 |
+
],
|
177 |
+
"Ignore": false,
|
178 |
+
"Comment": "",
|
179 |
+
"ThresholdMultiplier": 1,
|
180 |
+
"ScalerMin": 0,
|
181 |
+
"ScalerMax": 1
|
182 |
+
},
|
183 |
+
"12": {
|
184 |
+
"Index": 12,
|
185 |
+
"Name": "2 Nuc Tub No Neurite",
|
186 |
+
"TrainingCount": 38,
|
187 |
+
"RGB": [
|
188 |
+
109,
|
189 |
+
241,
|
190 |
+
105
|
191 |
+
],
|
192 |
+
"Ignore": false,
|
193 |
+
"Comment": "",
|
194 |
+
"ThresholdMultiplier": 1,
|
195 |
+
"ScalerMin": 0,
|
196 |
+
"ScalerMax": 1
|
197 |
+
},
|
198 |
+
"13": {
|
199 |
+
"Index": 13,
|
200 |
+
"Name": "3-4 Nuclei",
|
201 |
+
"TrainingCount": 211,
|
202 |
+
"RGB": [
|
203 |
+
210,
|
204 |
+
23,
|
205 |
+
65
|
206 |
+
],
|
207 |
+
"Ignore": false,
|
208 |
+
"Comment": "",
|
209 |
+
"ThresholdMultiplier": 1,
|
210 |
+
"ScalerMin": 0,
|
211 |
+
"ScalerMax": 1
|
212 |
+
},
|
213 |
+
"14": {
|
214 |
+
"Index": 14,
|
215 |
+
"Name": "5+ Nuclei",
|
216 |
+
"TrainingCount": 637,
|
217 |
+
"RGB": [
|
218 |
+
156,
|
219 |
+
85,
|
220 |
+
181
|
221 |
+
],
|
222 |
+
"Ignore": true,
|
223 |
+
"Comment": "",
|
224 |
+
"ThresholdMultiplier": 1,
|
225 |
+
"ScalerMin": 0,
|
226 |
+
"ScalerMax": 1
|
227 |
+
},
|
228 |
+
"15": {
|
229 |
+
"Index": 15,
|
230 |
+
"Name": "6 Focus (only if you really cant tell)",
|
231 |
+
"TrainingCount": 42,
|
232 |
+
"RGB": [
|
233 |
+
191,
|
234 |
+
87,
|
235 |
+
90
|
236 |
+
],
|
237 |
+
"Ignore": true,
|
238 |
+
"Comment": "",
|
239 |
+
"ThresholdMultiplier": 1,
|
240 |
+
"ScalerMin": 0,
|
241 |
+
"ScalerMax": 1
|
242 |
+
}
|
243 |
+
},
|
244 |
+
"ModelName": " acc_0.7969 CNN_AC_R CNNs_7 kn_4 flt_18 iRt_1.5 ds__270_ nE_169 bSz_64 bNm_0 i_22",
|
245 |
+
"ModelPath": "S:\\Raft\\FIV827\\001 SF Sort\\M\\ acc_0.7969 CNN_AC_R CNNs_7 kn_4 flt_18 iRt_1.5 ds__270_ nE_169 bSz_64 bNm_0 i_22",
|
246 |
+
"ModelType": "cat",
|
247 |
+
"ModelDate": "2023-04-04 00:07:32.203633",
|
248 |
+
"ThresholdDefault": 0.55,
|
249 |
+
"TrainingSize": 6500
|
250 |
+
}
|
SNIM16 (Fig S6)/KSM/keras_metadata.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c43cb9fa3aad60fb9c3839dac308108551c60adc508a08a5a146104767bbd8db
|
3 |
+
size 91729
|
SNIM16 (Fig S6)/KSM/saved_model.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c40c40cd658410e8757f87bd45d480a3f968cf59984cd6ddf81e44db0e864f5a
|
3 |
+
size 1452209
|
SNIM16 (Fig S6)/KSM/variables/variables.data-00000-of-00001
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:47f850118c6d7d4e54af54c0f499c0eb7bed75c86631ff2d52c9e9cc5521ea5d
|
3 |
+
size 12689468
|
SNIM16 (Fig S6)/KSM/variables/variables.index
ADDED
Binary file (6.28 kB). View file
|
|
SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4 flt_18 iRt_1.5 ds__270_ nE_169 bSz_64 bNm_0 i_22.txt
ADDED
File without changes
|
SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ef080b092edf8f25bef1f725f53d3061d792e5ba8c0d52cbcbd8bb8221479a8b
|
3 |
+
size 4232021
|
SNIM16 (Fig S6)/acc_0.7969 CNN_AC_R CNNs_7 kn_4.pb.png
ADDED
![]() |
Git LFS Details
|
SNIM20 CNNAr (FigS8 a)/FIVE_metadata.json
ADDED
@@ -0,0 +1,319 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"ModelName": "acc_0.6945 CNN_Ar CNNs_7 kn_2 flt_20 iRt_1.75 ds__471, 46, 31_ nE_53,256 bSz_64 bNm_1 i_112",
|
3 |
+
"ModelPath": "S:\\Raft\\FIV827\\002 SF Sort\\M FIVE 0913\\acc_0.6945 CNN_Ar CNNs_7 kn_2 flt_20 iRt_1.75 ds__471, 46, 31_ nE_53,256 bSz_64 bNm_1 i_112",
|
4 |
+
"ModelType": "cat",
|
5 |
+
"ModelDate": "2023-09-15 06:21:59.798738",
|
6 |
+
"ThresholdDefault": 0.7,
|
7 |
+
"TrainingSize": 10152,
|
8 |
+
"ColumnsIncluded": "",
|
9 |
+
"OutputMapping": {},
|
10 |
+
"AdditionalNote": "",
|
11 |
+
"ModelParams": "",
|
12 |
+
"PreferredInputShape": "",
|
13 |
+
"InputChannelNames": [],
|
14 |
+
"WillModelRescale": false,
|
15 |
+
"WillModelResize": false,
|
16 |
+
"ResizeByCropTrue_ZoomFalse": true,
|
17 |
+
"Index2ClassInfo": {
|
18 |
+
"0": {
|
19 |
+
"Index": 0,
|
20 |
+
"Name": "0 Empty",
|
21 |
+
"TrainingCount": 519,
|
22 |
+
"RGB": [
|
23 |
+
208,
|
24 |
+
71,
|
25 |
+
164
|
26 |
+
],
|
27 |
+
"Comment": "",
|
28 |
+
"Ignore": false,
|
29 |
+
"ThresholdMultiplier": 1,
|
30 |
+
"ScalerMin": 0,
|
31 |
+
"ScalerMax": 1
|
32 |
+
},
|
33 |
+
"1": {
|
34 |
+
"Index": 1,
|
35 |
+
"Name": "0 Neurites No Cell",
|
36 |
+
"TrainingCount": 435,
|
37 |
+
"RGB": [
|
38 |
+
110,
|
39 |
+
114,
|
40 |
+
197
|
41 |
+
],
|
42 |
+
"Comment": "",
|
43 |
+
"Ignore": false,
|
44 |
+
"ThresholdMultiplier": 1,
|
45 |
+
"ScalerMin": 0,
|
46 |
+
"ScalerMax": 1
|
47 |
+
},
|
48 |
+
"2": {
|
49 |
+
"Index": 2,
|
50 |
+
"Name": "1 Cell Disconnected Neurite",
|
51 |
+
"TrainingCount": 64,
|
52 |
+
"RGB": [
|
53 |
+
46,
|
54 |
+
251,
|
55 |
+
105
|
56 |
+
],
|
57 |
+
"Comment": "",
|
58 |
+
"Ignore": false,
|
59 |
+
"ThresholdMultiplier": 1,
|
60 |
+
"ScalerMin": 0,
|
61 |
+
"ScalerMax": 1
|
62 |
+
},
|
63 |
+
"3": {
|
64 |
+
"Index": 3,
|
65 |
+
"Name": "1 Cell Tub No Neurite",
|
66 |
+
"TrainingCount": 1734,
|
67 |
+
"RGB": [
|
68 |
+
210,
|
69 |
+
112,
|
70 |
+
208
|
71 |
+
],
|
72 |
+
"Comment": "",
|
73 |
+
"Ignore": false,
|
74 |
+
"ThresholdMultiplier": 1,
|
75 |
+
"ScalerMin": 0,
|
76 |
+
"ScalerMax": 1
|
77 |
+
},
|
78 |
+
"4": {
|
79 |
+
"Index": 4,
|
80 |
+
"Name": "1 Dead (no tubulin)",
|
81 |
+
"TrainingCount": 275,
|
82 |
+
"RGB": [
|
83 |
+
220,
|
84 |
+
200,
|
85 |
+
92
|
86 |
+
],
|
87 |
+
"Comment": "",
|
88 |
+
"Ignore": false,
|
89 |
+
"ThresholdMultiplier": 1,
|
90 |
+
"ScalerMin": 0,
|
91 |
+
"ScalerMax": 1
|
92 |
+
},
|
93 |
+
"5": {
|
94 |
+
"Index": 5,
|
95 |
+
"Name": "1 Neuron",
|
96 |
+
"TrainingCount": 1646,
|
97 |
+
"RGB": [
|
98 |
+
96,
|
99 |
+
60,
|
100 |
+
1
|
101 |
+
],
|
102 |
+
"Comment": "",
|
103 |
+
"Ignore": false,
|
104 |
+
"ThresholdMultiplier": 1,
|
105 |
+
"ScalerMin": 0,
|
106 |
+
"ScalerMax": 1
|
107 |
+
},
|
108 |
+
"6": {
|
109 |
+
"Index": 6,
|
110 |
+
"Name": "1 Neuron And Disconnected",
|
111 |
+
"TrainingCount": 64,
|
112 |
+
"RGB": [
|
113 |
+
95,
|
114 |
+
232,
|
115 |
+
83
|
116 |
+
],
|
117 |
+
"Comment": "",
|
118 |
+
"Ignore": false,
|
119 |
+
"ThresholdMultiplier": 1,
|
120 |
+
"ScalerMin": 0,
|
121 |
+
"ScalerMax": 1
|
122 |
+
},
|
123 |
+
"7": {
|
124 |
+
"Index": 7,
|
125 |
+
"Name": "1 Neuron Bulbs",
|
126 |
+
"TrainingCount": 8,
|
127 |
+
"RGB": [
|
128 |
+
138,
|
129 |
+
187,
|
130 |
+
222
|
131 |
+
],
|
132 |
+
"Comment": "",
|
133 |
+
"Ignore": false,
|
134 |
+
"ThresholdMultiplier": 1,
|
135 |
+
"ScalerMin": 0,
|
136 |
+
"ScalerMax": 1
|
137 |
+
},
|
138 |
+
"8": {
|
139 |
+
"Index": 8,
|
140 |
+
"Name": "1 Neuron On Edge",
|
141 |
+
"TrainingCount": 22,
|
142 |
+
"RGB": [
|
143 |
+
209,
|
144 |
+
64,
|
145 |
+
164
|
146 |
+
],
|
147 |
+
"Comment": "",
|
148 |
+
"Ignore": false,
|
149 |
+
"ThresholdMultiplier": 1,
|
150 |
+
"ScalerMin": 0,
|
151 |
+
"ScalerMax": 1
|
152 |
+
},
|
153 |
+
"9": {
|
154 |
+
"Index": 9,
|
155 |
+
"Name": "1 Neuron Poor Focus",
|
156 |
+
"TrainingCount": 43,
|
157 |
+
"RGB": [
|
158 |
+
208,
|
159 |
+
32,
|
160 |
+
186
|
161 |
+
],
|
162 |
+
"Comment": "",
|
163 |
+
"Ignore": false,
|
164 |
+
"ThresholdMultiplier": 1,
|
165 |
+
"ScalerMin": 0,
|
166 |
+
"ScalerMax": 1
|
167 |
+
},
|
168 |
+
"10": {
|
169 |
+
"Index": 10,
|
170 |
+
"Name": "1 Neuron Very Short",
|
171 |
+
"TrainingCount": 325,
|
172 |
+
"RGB": [
|
173 |
+
179,
|
174 |
+
142,
|
175 |
+
230
|
176 |
+
],
|
177 |
+
"Comment": "",
|
178 |
+
"Ignore": false,
|
179 |
+
"ThresholdMultiplier": 1,
|
180 |
+
"ScalerMin": 0,
|
181 |
+
"ScalerMax": 1
|
182 |
+
},
|
183 |
+
"11": {
|
184 |
+
"Index": 11,
|
185 |
+
"Name": "2 Nuc 1 Neuron",
|
186 |
+
"TrainingCount": 172,
|
187 |
+
"RGB": [
|
188 |
+
180,
|
189 |
+
208,
|
190 |
+
245
|
191 |
+
],
|
192 |
+
"Comment": "",
|
193 |
+
"Ignore": false,
|
194 |
+
"ThresholdMultiplier": 1,
|
195 |
+
"ScalerMin": 0,
|
196 |
+
"ScalerMax": 1
|
197 |
+
},
|
198 |
+
"12": {
|
199 |
+
"Index": 12,
|
200 |
+
"Name": "2 Nuc 1 Soma",
|
201 |
+
"TrainingCount": 84,
|
202 |
+
"RGB": [
|
203 |
+
29,
|
204 |
+
71,
|
205 |
+
3
|
206 |
+
],
|
207 |
+
"Comment": "",
|
208 |
+
"Ignore": false,
|
209 |
+
"ThresholdMultiplier": 1,
|
210 |
+
"ScalerMin": 0,
|
211 |
+
"ScalerMax": 1
|
212 |
+
},
|
213 |
+
"13": {
|
214 |
+
"Index": 13,
|
215 |
+
"Name": "2 Nuc 2 Neurons",
|
216 |
+
"TrainingCount": 402,
|
217 |
+
"RGB": [
|
218 |
+
36,
|
219 |
+
143,
|
220 |
+
53
|
221 |
+
],
|
222 |
+
"Comment": "",
|
223 |
+
"Ignore": false,
|
224 |
+
"ThresholdMultiplier": 1,
|
225 |
+
"ScalerMin": 0,
|
226 |
+
"ScalerMax": 1
|
227 |
+
},
|
228 |
+
"14": {
|
229 |
+
"Index": 14,
|
230 |
+
"Name": "2 Nuc Dead",
|
231 |
+
"TrainingCount": 49,
|
232 |
+
"RGB": [
|
233 |
+
26,
|
234 |
+
66,
|
235 |
+
112
|
236 |
+
],
|
237 |
+
"Comment": "",
|
238 |
+
"Ignore": false,
|
239 |
+
"ThresholdMultiplier": 1,
|
240 |
+
"ScalerMin": 0,
|
241 |
+
"ScalerMax": 1
|
242 |
+
},
|
243 |
+
"15": {
|
244 |
+
"Index": 15,
|
245 |
+
"Name": "2 Nuc Tub No Neurite",
|
246 |
+
"TrainingCount": 197,
|
247 |
+
"RGB": [
|
248 |
+
56,
|
249 |
+
195,
|
250 |
+
157
|
251 |
+
],
|
252 |
+
"Comment": "",
|
253 |
+
"Ignore": false,
|
254 |
+
"ThresholdMultiplier": 1,
|
255 |
+
"ScalerMin": 0,
|
256 |
+
"ScalerMax": 1
|
257 |
+
},
|
258 |
+
"16": {
|
259 |
+
"Index": 16,
|
260 |
+
"Name": "3 Nuclei",
|
261 |
+
"TrainingCount": 511,
|
262 |
+
"RGB": [
|
263 |
+
123,
|
264 |
+
187,
|
265 |
+
125
|
266 |
+
],
|
267 |
+
"Comment": "",
|
268 |
+
"Ignore": false,
|
269 |
+
"ThresholdMultiplier": 1,
|
270 |
+
"ScalerMin": 0,
|
271 |
+
"ScalerMax": 1
|
272 |
+
},
|
273 |
+
"17": {
|
274 |
+
"Index": 17,
|
275 |
+
"Name": "4 Nuclei",
|
276 |
+
"TrainingCount": 249,
|
277 |
+
"RGB": [
|
278 |
+
123,
|
279 |
+
112,
|
280 |
+
153
|
281 |
+
],
|
282 |
+
"Comment": "",
|
283 |
+
"Ignore": false,
|
284 |
+
"ThresholdMultiplier": 1,
|
285 |
+
"ScalerMin": 0,
|
286 |
+
"ScalerMax": 1
|
287 |
+
},
|
288 |
+
"18": {
|
289 |
+
"Index": 18,
|
290 |
+
"Name": "5+ Nuclei",
|
291 |
+
"TrainingCount": 3011,
|
292 |
+
"RGB": [
|
293 |
+
38,
|
294 |
+
44,
|
295 |
+
66
|
296 |
+
],
|
297 |
+
"Comment": "",
|
298 |
+
"Ignore": false,
|
299 |
+
"ThresholdMultiplier": 1,
|
300 |
+
"ScalerMin": 0,
|
301 |
+
"ScalerMax": 1
|
302 |
+
},
|
303 |
+
"19": {
|
304 |
+
"Index": 19,
|
305 |
+
"Name": "6 Out of Focus",
|
306 |
+
"TrainingCount": 342,
|
307 |
+
"RGB": [
|
308 |
+
165,
|
309 |
+
48,
|
310 |
+
1
|
311 |
+
],
|
312 |
+
"Comment": "",
|
313 |
+
"Ignore": false,
|
314 |
+
"ThresholdMultiplier": 1,
|
315 |
+
"ScalerMin": 0,
|
316 |
+
"ScalerMax": 1
|
317 |
+
}
|
318 |
+
}
|
319 |
+
}
|
SNIM20 CNNAr (FigS8 a)/KSM/keras_metadata.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ba462325ce99219076e5132d26400921e7f75d8fd16253f2429d5da69ffc7723
|
3 |
+
size 121731
|
SNIM20 CNNAr (FigS8 a)/KSM/saved_model.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:10f957480e73461ef15a4b1702d2d3c9080c09a09d211c50c02f6a747beaf2b4
|
3 |
+
size 1101202
|
SNIM20 CNNAr (FigS8 a)/KSM/variables/variables.data-00000-of-00001
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:57db9c2a08effea7581c54750c89bc41d4f9fc05f49afabd595dd163552554a4
|
3 |
+
size 29476820
|
SNIM20 CNNAr (FigS8 a)/KSM/variables/variables.index
ADDED
Binary file (12 kB). View file
|
|
SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs.onnx
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:da4e6b4422c8e854264e146b47214fbbe89639bdb456923d23186ea8595d217e
|
3 |
+
size 9828020
|
SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs.pb
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:355eaf351ee93278b8da641b5719e5fc2efb8f5edf5a4ccf4e193b575198367a
|
3 |
+
size 9853645
|
SNIM20 CNNAr (FigS8 a)/acc_0.6945 CNN_Ar CNNs_7 kn_2 flt_20 iRt_1.75 ds__471, 46, 31_ nE_53,256 bSz_64 bNm_1 i_112.txt
ADDED
File without changes
|