esm2_t12_35M_qlora_binding_sites_v0 / pdb_structure_metrics.txt
AmelieSchreiber's picture
Create pdb_structure_metrics.txt
1c87195
--------------------------------------------------
Train:
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 54/54 [00:09<00:00, 5.83it/s]
Dataset: GTP_Training.txt
Accuracy: 0.9193
Precision: 0.2000
Recall: 0.4591
F1 Score: 0.2786
AUC: 0.6973
MCC: 0.2666
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 82/82 [00:06<00:00, 12.07it/s]
Dataset: GDP_Training.txt
Accuracy: 0.9127
Precision: 0.2443
Recall: 0.5586
F1 Score: 0.3400
AUC: 0.7431
MCC: 0.3305
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 172/172 [00:12<00:00, 14.15it/s]
Dataset: FE_Training.txt
Accuracy: 0.9225
Precision: 0.0592
Recall: 0.2592
F1 Score: 0.0964
AUC: 0.5962
MCC: 0.0946
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 145/145 [00:10<00:00, 14.23it/s]
Dataset: AMP_Training.txt
Accuracy: 0.9000
Precision: 0.1379
Recall: 0.3562
F1 Score: 0.1988
AUC: 0.6379
MCC: 0.1767
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 206/206 [00:16<00:00, 12.76it/s]
Dataset: HEME_Training.txt
Accuracy: 0.8829
Precision: 0.1990
Recall: 0.1482
F1 Score: 0.1699
AUC: 0.5478
MCC: 0.1097
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 221/221 [00:15<00:00, 13.86it/s]
Dataset: ATP_Training.txt
Accuracy: 0.9232
Precision: 0.2370
Recall: 0.4124
F1 Score: 0.3010
AUC: 0.6785
MCC: 0.2749
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 335/335 [00:24<00:00, 13.79it/s]
Dataset: DNA_Training.txt
Accuracy: 0.8784
Precision: 0.1866
Recall: 0.1382
F1 Score: 0.1588
AUC: 0.5418
MCC: 0.0961
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 296/296 [00:22<00:00, 13.25it/s]
Dataset: ADP_Training.txt
Accuracy: 0.9195
Precision: 0.2168
Recall: 0.4417
F1 Score: 0.2908
AUC: 0.6899
MCC: 0.2716
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 334/334 [00:25<00:00, 13.35it/s]
Dataset: MN_Training.txt
Accuracy: 0.9222
Precision: 0.0587
Recall: 0.3269
F1 Score: 0.0995
AUC: 0.6285
MCC: 0.1124
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 1152/1152 [01:25<00:00, 13.45it/s]
Dataset: ZN_Training.txt
Accuracy: 0.9192
Precision: 0.0366
Recall: 0.1773
F1 Score: 0.0606
AUC: 0.5538
MCC: 0.0503
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 1131/1131 [01:23<00:00, 13.47it/s]
Dataset: MG_Training.txt
Accuracy: 0.9192
Precision: 0.0438
Recall: 0.3083
F1 Score: 0.0767
AUC: 0.6171
MCC: 0.0913
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 961/961 [01:11<00:00, 13.36it/s]
Dataset: CA_Training.txt
Accuracy: 0.9095
Precision: 0.0413
Recall: 0.1976
F1 Score: 0.0683
AUC: 0.5596
MCC: 0.0564
--------------------------------------------------
Test:
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 27/27 [00:03<00:00, 8.91it/s]
Dataset: HEME_Validation.txt
Accuracy: 0.9021
Precision: 0.1515
Recall: 0.1207
F1 Score: 0.1344
AUC: 0.5376
MCC: 0.0838
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 7/7 [00:01<00:00, 6.24it/s]
Dataset: GTP_Validation.txt
Accuracy: 0.9096
Precision: 0.2412
Recall: 0.4607
F1 Score: 0.3166
AUC: 0.6958
MCC: 0.2897
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 14/14 [00:01<00:00, 8.16it/s]
Dataset: GDP_Validation.txt
Accuracy: 0.9186
Precision: 0.2846
Recall: 0.5515
F1 Score: 0.3754
AUC: 0.7436
MCC: 0.3578
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 26/26 [00:02<00:00, 11.64it/s]
Dataset: FE_Validation.txt
Accuracy: 0.9383
Precision: 0.0676
Recall: 0.2917
F1 Score: 0.1097
AUC: 0.6193
MCC: 0.1174
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 58/58 [00:04<00:00, 13.79it/s]
Dataset: MN_Validation.txt
Accuracy: 0.9161
Precision: 0.0542
Recall: 0.3207
F1 Score: 0.0927
AUC: 0.6224
MCC: 0.1042
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 33/33 [00:02<00:00, 13.63it/s]
Dataset: AMP_Validation.txt
Accuracy: 0.9044
Precision: 0.1682
Recall: 0.4107
F1 Score: 0.2387
AUC: 0.6669
MCC: 0.2197
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 52/52 [00:04<00:00, 12.43it/s]
Dataset: DNA_Validation.txt
Accuracy: 0.9150
Precision: 0.1609
Recall: 0.1192
F1 Score: 0.1370
AUC: 0.5410
MCC: 0.0944
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 50/50 [00:03<00:00, 13.51it/s]
Dataset: ATP_Validation.txt
Accuracy: 0.9141
Precision: 0.1873
Recall: 0.3879
F1 Score: 0.2526
AUC: 0.6612
MCC: 0.2289
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 47/47 [00:03<00:00, 12.76it/s]
Dataset: ADP_Validation.txt
Accuracy: 0.9282
Precision: 0.2120
Recall: 0.4417
F1 Score: 0.2865
AUC: 0.6931
MCC: 0.2727
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 176/176 [00:13<00:00, 13.51it/s]
Dataset: ZN_Validation.txt
Accuracy: 0.9224
Precision: 0.0418
Recall: 0.1855
F1 Score: 0.0682
AUC: 0.5597
MCC: 0.0582
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 165/165 [00:12<00:00, 13.35it/s]
Dataset: CA_Validation.txt
Accuracy: 0.9146
Precision: 0.0366
Recall: 0.1949
F1 Score: 0.0616
AUC: 0.5600
MCC: 0.0537
--------------------------------------------------
Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 217/217 [00:16<00:00, 13.36it/s]
Dataset: MG_Validation.txt
Accuracy: 0.9227
Precision: 0.0370
Recall: 0.2242
F1 Score: 0.0635
AUC: 0.5775
MCC: 0.0650
--------------------------------------------------