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Create pdb_structure_metrics.txt

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  1. pdb_structure_metrics.txt +221 -0
pdb_structure_metrics.txt ADDED
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+ --------------------------------------------------
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+ Train:
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 54/54 [00:09<00:00, 5.83it/s]
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+ Dataset: GTP_Training.txt
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+ Accuracy: 0.9193
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+ Precision: 0.2000
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+ Recall: 0.4591
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+ F1 Score: 0.2786
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+ AUC: 0.6973
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+ MCC: 0.2666
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 82/82 [00:06<00:00, 12.07it/s]
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+ Dataset: GDP_Training.txt
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+ Accuracy: 0.9127
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+ Precision: 0.2443
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+ Recall: 0.5586
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+ F1 Score: 0.3400
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+ AUC: 0.7431
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+ MCC: 0.3305
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 172/172 [00:12<00:00, 14.15it/s]
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+ Dataset: FE_Training.txt
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+ Accuracy: 0.9225
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+ Precision: 0.0592
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+ Recall: 0.2592
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+ F1 Score: 0.0964
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+ AUC: 0.5962
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+ MCC: 0.0946
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 145/145 [00:10<00:00, 14.23it/s]
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+ Dataset: AMP_Training.txt
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+ Accuracy: 0.9000
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+ Precision: 0.1379
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+ Recall: 0.3562
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+ F1 Score: 0.1988
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+ AUC: 0.6379
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+ MCC: 0.1767
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 206/206 [00:16<00:00, 12.76it/s]
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+ Dataset: HEME_Training.txt
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+ Accuracy: 0.8829
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+ Precision: 0.1990
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+ Recall: 0.1482
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+ F1 Score: 0.1699
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+ AUC: 0.5478
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+ MCC: 0.1097
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 221/221 [00:15<00:00, 13.86it/s]
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+ Dataset: ATP_Training.txt
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+ Accuracy: 0.9232
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+ Precision: 0.2370
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+ Recall: 0.4124
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+ F1 Score: 0.3010
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+ AUC: 0.6785
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+ MCC: 0.2749
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 335/335 [00:24<00:00, 13.79it/s]
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+ Dataset: DNA_Training.txt
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+ Accuracy: 0.8784
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+ Precision: 0.1866
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+ Recall: 0.1382
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+ F1 Score: 0.1588
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+ AUC: 0.5418
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+ MCC: 0.0961
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 296/296 [00:22<00:00, 13.25it/s]
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+ Dataset: ADP_Training.txt
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+ Accuracy: 0.9195
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+ Precision: 0.2168
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+ Recall: 0.4417
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+ F1 Score: 0.2908
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+ AUC: 0.6899
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+ MCC: 0.2716
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 334/334 [00:25<00:00, 13.35it/s]
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+ Dataset: MN_Training.txt
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+ Accuracy: 0.9222
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+ Precision: 0.0587
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+ Recall: 0.3269
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+ F1 Score: 0.0995
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+ AUC: 0.6285
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+ MCC: 0.1124
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 1152/1152 [01:25<00:00, 13.45it/s]
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+ Dataset: ZN_Training.txt
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+ Accuracy: 0.9192
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+ Precision: 0.0366
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+ Recall: 0.1773
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+ F1 Score: 0.0606
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+ AUC: 0.5538
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+ MCC: 0.0503
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 1131/1131 [01:23<00:00, 13.47it/s]
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+ Dataset: MG_Training.txt
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+ Accuracy: 0.9192
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+ Precision: 0.0438
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+ Recall: 0.3083
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+ F1 Score: 0.0767
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+ AUC: 0.6171
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+ MCC: 0.0913
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 961/961 [01:11<00:00, 13.36it/s]
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+ Dataset: CA_Training.txt
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+ Accuracy: 0.9095
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+ Precision: 0.0413
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+ Recall: 0.1976
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+ F1 Score: 0.0683
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+ AUC: 0.5596
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+ MCC: 0.0564
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+ --------------------------------------------------
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+ Test:
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 27/27 [00:03<00:00, 8.91it/s]
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+ Dataset: HEME_Validation.txt
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+ Accuracy: 0.9021
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+ Precision: 0.1515
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+ Recall: 0.1207
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+ F1 Score: 0.1344
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+ AUC: 0.5376
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+ MCC: 0.0838
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 7/7 [00:01<00:00, 6.24it/s]
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+ Dataset: GTP_Validation.txt
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+ Accuracy: 0.9096
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+ Precision: 0.2412
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+ Recall: 0.4607
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+ F1 Score: 0.3166
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+ AUC: 0.6958
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+ MCC: 0.2897
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 14/14 [00:01<00:00, 8.16it/s]
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+ Dataset: GDP_Validation.txt
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+ Accuracy: 0.9186
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+ Precision: 0.2846
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+ Recall: 0.5515
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+ F1 Score: 0.3754
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+ AUC: 0.7436
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+ MCC: 0.3578
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 26/26 [00:02<00:00, 11.64it/s]
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+ Dataset: FE_Validation.txt
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+ Accuracy: 0.9383
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+ Precision: 0.0676
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+ Recall: 0.2917
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+ F1 Score: 0.1097
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+ AUC: 0.6193
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+ MCC: 0.1174
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 58/58 [00:04<00:00, 13.79it/s]
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+ Dataset: MN_Validation.txt
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+ Accuracy: 0.9161
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+ Precision: 0.0542
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+ Recall: 0.3207
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+ F1 Score: 0.0927
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+ AUC: 0.6224
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+ MCC: 0.1042
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 33/33 [00:02<00:00, 13.63it/s]
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+ Dataset: AMP_Validation.txt
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+ Accuracy: 0.9044
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+ Precision: 0.1682
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+ Recall: 0.4107
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+ F1 Score: 0.2387
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+ AUC: 0.6669
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+ MCC: 0.2197
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 52/52 [00:04<00:00, 12.43it/s]
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+ Dataset: DNA_Validation.txt
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+ Accuracy: 0.9150
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+ Precision: 0.1609
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+ Recall: 0.1192
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+ F1 Score: 0.1370
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+ AUC: 0.5410
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+ MCC: 0.0944
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 50/50 [00:03<00:00, 13.51it/s]
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+ Dataset: ATP_Validation.txt
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+ Accuracy: 0.9141
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+ Precision: 0.1873
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+ Recall: 0.3879
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+ F1 Score: 0.2526
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+ AUC: 0.6612
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+ MCC: 0.2289
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 47/47 [00:03<00:00, 12.76it/s]
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+ Dataset: ADP_Validation.txt
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+ Accuracy: 0.9282
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+ Precision: 0.2120
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+ Recall: 0.4417
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+ F1 Score: 0.2865
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+ AUC: 0.6931
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+ MCC: 0.2727
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 176/176 [00:13<00:00, 13.51it/s]
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+ Dataset: ZN_Validation.txt
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+ Accuracy: 0.9224
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+ Precision: 0.0418
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+ Recall: 0.1855
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+ F1 Score: 0.0682
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+ AUC: 0.5597
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+ MCC: 0.0582
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 165/165 [00:12<00:00, 13.35it/s]
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+ Dataset: CA_Validation.txt
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+ Accuracy: 0.9146
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+ Precision: 0.0366
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+ Recall: 0.1949
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+ F1 Score: 0.0616
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+ AUC: 0.5600
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+ MCC: 0.0537
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+ --------------------------------------------------
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+ Processing rows: 100%|β–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆβ–ˆ| 217/217 [00:16<00:00, 13.36it/s]
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+ Dataset: MG_Validation.txt
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+ Accuracy: 0.9227
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+ Precision: 0.0370
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+ Recall: 0.2242
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+ F1 Score: 0.0635
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+ AUC: 0.5775
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+ MCC: 0.0650
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+ --------------------------------------------------